RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CHTOPQ9Y3Y2 248 aaKnown RBP3.83□□□□□ -1.8
VPS4A-203ENST00000564399 TRAV23DV6A0A075B6W5 121 aa3.82□□□□□ -1.8
VPS4A-203ENST00000564399 A0A096LNJ9 63 aa3.82□□□□□ -1.8
VPS4A-203ENST00000564399 HBDP02042 147 aa3.82□□□□□ -1.8
VPS4A-203ENST00000564399 FABP9Q0Z7S8 132 aa3.82□□□□□ -1.8
VPS4A-203ENST00000564399 KRTAP19-4Q3LI73 84 aa3.82□□□□□ -1.8
VPS4A-203ENST00000564399 NEBP20929 6669 aa3.82□□□□□ -1.8
VPS4A-203ENST00000564399 MYMXA0A1B0GTQ4 84 aa3.81□□□□□ -1.8
VPS4A-203ENST00000564399 C5orf52A6NGY3 159 aa3.81□□□□□ -1.8
VPS4A-203ENST00000564399 ZNF73O43830 326 aaPredicted RBP3.81□□□□□ -1.8
VPS4A-203ENST00000564399 HINT1P49773 126 aaPredicted RBP3.81□□□□□ -1.8
VPS4A-203ENST00000564399 CD164Q04900 197 aa3.81□□□□□ -1.8
VPS4A-203ENST00000564399 PMCHL1Q16048 86 aa3.81□□□□□ -1.8
VPS4A-203ENST00000564399 C1orf195Q5TG92 126 aa3.81□□□□□ -1.8
VPS4A-203ENST00000564399 MIEN1Q9BRT3 115 aa3.81□□□□□ -1.8
VPS4A-203ENST00000564399 SPANXB1Q9NS25 103 aaPredicted RBP3.81□□□□□ -1.8
VPS4A-203ENST00000564399 SPRR1BP22528 89 aa3.8□□□□□ -1.8
VPS4A-203ENST00000564399 PRO1933Q9H354 126 aa3.8□□□□□ -1.8
VPS4A-203ENST00000564399 LOC107984156A0A0G2JMH3 177 aa3.79□□□□□ -1.8
VPS4A-203ENST00000564399 LINC00614P0C842 121 aa3.79□□□□□ -1.8
VPS4A-203ENST00000564399 S100PP25815 95 aa3.79□□□□□ -1.8
VPS4A-203ENST00000564399 Q1RN00 199 aa3.79□□□□□ -1.8
VPS4A-203ENST00000564399 ATP11AUNQ6ZP68 121 aa3.79□□□□□ -1.8
VPS4A-203ENST00000564399 COMMD7Q86VX2 200 aa3.79□□□□□ -1.8
VPS4A-203ENST00000564399 ARL17AQ8IVW1 177 aa3.79□□□□□ -1.8
VPS4A-203ENST00000564399 KRTAP9-9Q9BYP9 154 aa3.79□□□□□ -1.8
VPS4A-203ENST00000564399 KRTAP9-4Q9BYQ2 154 aa3.79□□□□□ -1.8
VPS4A-203ENST00000564399 AKR1D1P51857 326 aa3.78□□□□□ -1.8
VPS4A-203ENST00000564399 TAL2Q16559 108 aa3.78□□□□□ -1.8
VPS4A-203ENST00000564399 COX19Q49B96 90 aa3.78□□□□□ -1.8
VPS4A-203ENST00000564399 Q5XG85 94 aa3.78□□□□□ -1.8
VPS4A-203ENST00000564399 SMIM29Q86T20 159 aa3.78□□□□□ -1.8
VPS4A-203ENST00000564399 URB1-AS1Q96HZ7 61 aa3.78□□□□□ -1.8
VPS4A-203ENST00000564399 SEC11CQ9BY50 192 aa3.78□□□□□ -1.8
VPS4A-203ENST00000564399 C20orf202A1L168 122 aa3.77□□□□□ -1.81
VPS4A-203ENST00000564399 NDUFC2O95298 119 aa3.77□□□□□ -1.81
VPS4A-203ENST00000564399 LINC00310P59036 64 aa3.77□□□□□ -1.81
VPS4A-203ENST00000564399 DEFB105AQ8NG35 78 aa3.77□□□□□ -1.81
VPS4A-203ENST00000564399 C18orf32Q8TCD1 76 aa3.77□□□□□ -1.81
VPS4A-203ENST00000564399 LINC00846Q9NV44 126 aa3.77□□□□□ -1.81
VPS4A-203ENST00000564399 DHRS4-AS1Q9P1J3 65 aa3.77□□□□□ -1.81
VPS4A-203ENST00000564399 CBY1Q9Y3M2 126 aa3.77□□□□□ -1.81
VPS4A-203ENST00000564399 TRAV12-1A0A0B4J245 112 aa3.76□□□□□ -1.81
VPS4A-203ENST00000564399 MT2AP02795 61 aa3.76□□□□□ -1.81
VPS4A-203ENST00000564399 RPS10P5Q9NQ39 176 aa3.76□□□□□ -1.81
VPS4A-203ENST00000564399 A0A0G2JQZ4 141 aa3.75□□□□□ -1.81
VPS4A-203ENST00000564399 TCL1BO95988 128 aa3.75□□□□□ -1.81
VPS4A-203ENST00000564399 NPC2P61916 151 aa3.75□□□□□ -1.81
VPS4A-203ENST00000564399 IFITM2Q01629 132 aa3.75□□□□□ -1.81
VPS4A-203ENST00000564399 PCP2Q8IVA1 136 aa3.75□□□□□ -1.81
VPS4A-203ENST00000564399 OR13C6PQ8NH95 151 aa3.75□□□□□ -1.81
VPS4A-203ENST00000564399 IFI27L1Q96BM0 104 aa3.75□□□□□ -1.81
VPS4A-203ENST00000564399 TRBV20-1A0A075B6N2 111 aa3.74□□□□□ -1.81
VPS4A-203ENST00000564399 KRTAP4-8A0A0G2JLE6 195 aa3.74□□□□□ -1.81
VPS4A-203ENST00000564399 TEX49A0A1B0GTD5 131 aa3.74□□□□□ -1.81
VPS4A-203ENST00000564399 TSPEAR-AS2P59090 65 aa3.74□□□□□ -1.81
VPS4A-203ENST00000564399 KRTAP10-10P60014 251 aa3.74□□□□□ -1.81
VPS4A-203ENST00000564399 RHEBQ15382 184 aa3.74□□□□□ -1.81
VPS4A-203ENST00000564399 TRAPPC1Q9Y5R8 145 aa3.74□□□□□ -1.81
VPS4A-203ENST00000564399 H0Y8G0 127 aa3.73□□□□□ -1.81
VPS4A-203ENST00000564399 J3QQQ9 107 aa3.73□□□□□ -1.81
VPS4A-203ENST00000564399 LEPROTO15243 131 aa3.73□□□□□ -1.81
VPS4A-203ENST00000564399 MT1FP04733 61 aa3.73□□□□□ -1.81
VPS4A-203ENST00000564399 KRTAP20-1Q3LI63 56 aa3.73□□□□□ -1.81
VPS4A-203ENST00000564399 C10orf91Q5T1B1 145 aa3.73□□□□□ -1.81
VPS4A-203ENST00000564399 OBSCN-AS1Q96MR7 158 aa3.73□□□□□ -1.81
VPS4A-203ENST00000564399 LGALS3P17931 250 aaKnown RBP3.72□□□□□ -1.81
VPS4A-203ENST00000564399 COX7BP24311 80 aa3.72□□□□□ -1.81
VPS4A-203ENST00000564399 SOSTDC1Q6X4U4 206 aa3.72□□□□□ -1.81
VPS4A-203ENST00000564399 Q75L30 129 aa3.72□□□□□ -1.81
VPS4A-203ENST00000564399 KRTAP9-3Q9BYQ3 159 aa3.72□□□□□ -1.81
VPS4A-203ENST00000564399 NMUP48645 174 aa3.71□□□□□ -1.82
VPS4A-203ENST00000564399 ANKRD39Q53RE8 183 aa3.71□□□□□ -1.82
VPS4A-203ENST00000564399 FAM236DA0A1B0GTK5 79 aa3.7□□□□□ -1.82
VPS4A-203ENST00000564399 FAM236CP0DP71 79 aa3.7□□□□□ -1.82
VPS4A-203ENST00000564399 ELOF1P60002 83 aaKnown RBP3.7□□□□□ -1.82
VPS4A-203ENST00000564399 HERVK_113P61574 105 aa3.7□□□□□ -1.82
VPS4A-203ENST00000564399 KRTAP6-3Q3LI67 103 aa3.7□□□□□ -1.82
VPS4A-203ENST00000564399 C6orf99Q4VX62 202 aa3.7□□□□□ -1.82
VPS4A-203ENST00000564399 ADAMTSL4-AS1Q5T5F5 129 aa3.7□□□□□ -1.82
VPS4A-203ENST00000564399 TMEM218A2RU14 115 aa3.69□□□□□ -1.82
VPS4A-203ENST00000564399 CHCHD1Q96BP2 118 aaKnown RBP3.69□□□□□ -1.82
VPS4A-203ENST00000564399 Q96NJ1 140 aa3.69□□□□□ -1.82
VPS4A-203ENST00000564399 SPANXCQ9NY87 97 aa3.69□□□□□ -1.82
VPS4A-203ENST00000564399 A0A0J9YXY3 114 aa3.68□□□□□ -1.82
VPS4A-203ENST00000564399 KRTAP19-6Q3LI70 58 aa3.68□□□□□ -1.82
VPS4A-203ENST00000564399 LCE1DQ5T752 114 aa3.68□□□□□ -1.82
VPS4A-203ENST00000564399 SPANXDQ9BXN6 97 aa3.68□□□□□ -1.82
VPS4A-203ENST00000564399 PLNP26678 52 aa3.67□□□□□ -1.82
VPS4A-203ENST00000564399 LINC00308Q8TCZ7 52 aa3.67□□□□□ -1.82
VPS4A-203ENST00000564399 C20orf166-AS1Q96NR2 134 aa3.67□□□□□ -1.82
VPS4A-203ENST00000564399 IGLV5-48A0A075B6I7 105 aa3.66□□□□□ -1.82
VPS4A-203ENST00000564399 F8WEM9 126 aa3.66□□□□□ -1.82
VPS4A-203ENST00000564399 HSBP1O75506 76 aa3.66□□□□□ -1.82
VPS4A-203ENST00000564399 DPM2O94777 84 aa3.66□□□□□ -1.82
VPS4A-203ENST00000564399 UQCC3Q6UW78 93 aa3.66□□□□□ -1.82
VPS4A-203ENST00000564399 LINC00518Q8N0U6 118 aa3.65□□□□□ -1.83
VPS4A-203ENST00000564399 PMCHL2Q9BQD1 86 aa3.65□□□□□ -1.83
VPS4A-203ENST00000564399 TRBV7-6A0A0J9YX20 115 aa3.64□□□□□ -1.83
VPS4A-203ENST00000564399 TRBV7-7A0A0K0K1E9 115 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms