RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 HIST1H2BDP58876 126 aa10.07□□□□□ -0.8
NME3-205ENST00000563854 HIST1H2BCP62807 126 aa10.07□□□□□ -0.8
NME3-205ENST00000563854 HIST2H2BEQ16778 126 aa10.07□□□□□ -0.8
NME3-205ENST00000563854 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.07□□□□□ -0.8
NME3-205ENST00000563854 HIST1H2BHQ93079 126 aa10.07□□□□□ -0.8
NME3-205ENST00000563854 HIST1H2BNQ99877 126 aa10.07□□□□□ -0.8
NME3-205ENST00000563854 HIST1H2BMQ99879 126 aa10.07□□□□□ -0.8
NME3-205ENST00000563854 ZNF73O43830 326 aaPredicted RBP10.04□□□□□ -0.8
NME3-205ENST00000563854 SPINK1P00995 79 aa10.04□□□□□ -0.8
NME3-205ENST00000563854 JOSD1Q15040 202 aaPredicted RBP10.04□□□□□ -0.8
NME3-205ENST00000563854 FP248Q71RG6 208 aaPredicted RBP10.04□□□□□ -0.8
NME3-205ENST00000563854 OR13C6PQ8NH95 151 aa10.03□□□□□ -0.8
NME3-205ENST00000563854 ZNF815PA8K554 130 aa10.02□□□□□ -0.81
NME3-205ENST00000563854 C9orf153Q5TBE3 101 aa10.02□□□□□ -0.81
NME3-205ENST00000563854 LINC01545Q5VT33 79 aa10.02□□□□□ -0.81
NME3-205ENST00000563854 PET117Q6UWS5 81 aa10.01□□□□□ -0.81
NME3-205ENST00000563854 LINC00308Q8TCZ7 52 aa10.01□□□□□ -0.81
NME3-205ENST00000563854 LITAFQ99732 161 aa10.01□□□□□ -0.81
NME3-205ENST00000563854 HINT1P49773 126 aaPredicted RBP10□□□□□ -0.81
NME3-205ENST00000563854 SSBP3-AS1Q7Z2R9 100 aa10□□□□□ -0.81
NME3-205ENST00000563854 ST20-AS1Q8NBB2 130 aa10□□□□□ -0.81
NME3-205ENST00000563854 TTTY13Q9BZ97 58 aa10□□□□□ -0.81
NME3-205ENST00000563854 SPANXCQ9NY87 97 aa10□□□□□ -0.81
NME3-205ENST00000563854 S100A1P23297 94 aa9.99□□□□□ -0.81
NME3-205ENST00000563854 KRTDAPP60985 99 aa9.99□□□□□ -0.81
NME3-205ENST00000563854 CBY1Q9Y3M2 126 aa9.99□□□□□ -0.81
NME3-205ENST00000563854 TIMM17BO60830 172 aa9.98□□□□□ -0.81
NME3-205ENST00000563854 C3orf79P0CE67 100 aa9.98□□□□□ -0.81
NME3-205ENST00000563854 MUC17Q685J3 4493 aa9.97□□□□□ -0.81
NME3-205ENST00000563854 KRTAP13-3Q3SY46 172 aa9.96□□□□□ -0.82
NME3-205ENST00000563854 Q8N377 158 aa9.95□□□□□ -0.82
NME3-205ENST00000563854 SPANXDQ9BXN6 97 aa9.94□□□□□ -0.82
NME3-205ENST00000563854 RPS29P62273 56 aaKnown RBP9.93□□□□□ -0.82
NME3-205ENST00000563854 SCGB1D4Q6XE38 83 aa9.93□□□□□ -0.82
NME3-205ENST00000563854 C20orf202A1L168 122 aa9.92□□□□□ -0.82
NME3-205ENST00000563854 SLC25A20O43772 301 aa9.92□□□□□ -0.82
NME3-205ENST00000563854 FAT4Q6V0I7 4981 aa9.92□□□□□ -0.82
NME3-205ENST00000563854 KRTAP9-2Q9BYQ4 174 aa9.91□□□□□ -0.82
NME3-205ENST00000563854 DHRS4-AS1Q9P1J3 65 aa9.91□□□□□ -0.82
NME3-205ENST00000563854 COX7BP24311 80 aa9.9□□□□□ -0.82
NME3-205ENST00000563854 C6orf99Q4VX62 202 aa9.9□□□□□ -0.82
NME3-205ENST00000563854 ATOH7Q8N100 152 aa9.9□□□□□ -0.82
NME3-205ENST00000563854 C5orf52A6NGY3 159 aa9.89□□□□□ -0.83
NME3-205ENST00000563854 ANKRD39Q53RE8 183 aa9.89□□□□□ -0.83
NME3-205ENST00000563854 COA6Q5JTJ3 125 aaKnown RBP9.89□□□□□ -0.83
NME3-205ENST00000563854 LINC00518Q8N0U6 118 aa9.89□□□□□ -0.83
NME3-205ENST00000563854 HRCT1Q6UXD1 115 aa9.88□□□□□ -0.83
NME3-205ENST00000563854 ELOF1P60002 83 aaKnown RBP9.87□□□□□ -0.83
NME3-205ENST00000563854 LCE2AQ5TA79 106 aaPredicted RBP9.87□□□□□ -0.83
NME3-205ENST00000563854 SLC25A34Q6PIV7 304 aa9.87□□□□□ -0.83
NME3-205ENST00000563854 DEFB105AQ8NG35 78 aa9.87□□□□□ -0.83
NME3-205ENST00000563854 LAMTOR3Q9UHA4 124 aa9.86□□□□□ -0.83
NME3-205ENST00000563854 SPRR1BP22528 89 aa9.85□□□□□ -0.83
NME3-205ENST00000563854 TAL2Q16559 108 aa9.85□□□□□ -0.83
NME3-205ENST00000563854 ASB16-AS1Q495Z4 193 aa9.85□□□□□ -0.83
NME3-205ENST00000563854 A6NDN8 102 aa9.84□□□□□ -0.83
NME3-205ENST00000563854 Q1RN00 199 aa9.84□□□□□ -0.83
NME3-205ENST00000563854 COPS9Q8WXC6 57 aa9.84□□□□□ -0.83
NME3-205ENST00000563854 SEC61BP60468 96 aaKnown RBP9.83□□□□□ -0.84
NME3-205ENST00000563854 PCP2Q8IVA1 136 aa9.82□□□□□ -0.84
NME3-205ENST00000563854 LIMD2Q9BT23 127 aa9.82□□□□□ -0.84
NME3-205ENST00000563854 IFITM1P13164 125 aa9.81□□□□□ -0.84
NME3-205ENST00000563854 MUSTN1Q8IVN3 82 aa9.81□□□□□ -0.84
NME3-205ENST00000563854 TEX49A0A1B0GTD5 131 aa9.78□□□□□ -0.84
NME3-205ENST00000563854 A0A1B0GWB2 263 aa9.78□□□□□ -0.84
NME3-205ENST00000563854 XP32Q5T750 250 aa9.78□□□□□ -0.84
NME3-205ENST00000563854 Q6ZVH6 145 aa9.78□□□□□ -0.84
NME3-205ENST00000563854 TRBV7-6A0A0J9YX20 115 aa9.77□□□□□ -0.85
NME3-205ENST00000563854 AKR1D1P51857 326 aa9.77□□□□□ -0.85
NME3-205ENST00000563854 KRTAP4-1Q9BYQ7 146 aa9.77□□□□□ -0.85
NME3-205ENST00000563854 PRO1933Q9H354 126 aa9.76□□□□□ -0.85
NME3-205ENST00000563854 H7C2G1 150 aa9.75□□□□□ -0.85
NME3-205ENST00000563854 TRAV13-2A0A0B4J235 113 aa9.73□□□□□ -0.85
NME3-205ENST00000563854 C9orf92A6NGG3 77 aa9.73□□□□□ -0.85
NME3-205ENST00000563854 S100A2P29034 98 aa9.73□□□□□ -0.85
NME3-205ENST00000563854 SMIM11BQ8TCY0 68 aa9.73□□□□□ -0.85
NME3-205ENST00000563854 SNRPEP62304 92 aaKnown RBP9.72□□□□□ -0.85
NME3-205ENST00000563854 A0A0G2JQZ4 141 aa9.71□□□□□ -0.86
NME3-205ENST00000563854 SMIM29Q86T20 159 aa9.71□□□□□ -0.86
NME3-205ENST00000563854 HIST3H2BBQ8N257 126 aa9.71□□□□□ -0.86
NME3-205ENST00000563854 IGLV5-48A0A075B6I7 105 aa9.7□□□□□ -0.86
NME3-205ENST00000563854 A4D1N5 150 aa9.7□□□□□ -0.86
NME3-205ENST00000563854 HSBP1L1C9JCN9 74 aa9.7□□□□□ -0.86
NME3-205ENST00000563854 LINC01547P58512 204 aaPredicted RBP9.7□□□□□ -0.86
NME3-205ENST00000563854 CD164Q04900 197 aa9.7□□□□□ -0.86
NME3-205ENST00000563854 HIST1H2BLQ99880 126 aa9.7□□□□□ -0.86
NME3-205ENST00000563854 NHP2Q9NX24 153 aaKnown RBP9.7□□□□□ -0.86
NME3-205ENST00000563854 KRTAP9-6A0A140TA67 174 aa9.67□□□□□ -0.86
NME3-205ENST00000563854 VAMP3Q15836 100 aa9.65□□□□□ -0.86
NME3-205ENST00000563854 S100A6P06703 90 aa9.64□□□□□ -0.87
NME3-205ENST00000563854 PCOTHQ58A44 107 aa9.64□□□□□ -0.87
NME3-205ENST00000563854 F8WEM9 126 aa9.63□□□□□ -0.87
NME3-205ENST00000563854 C12orf57Q99622 126 aa9.62□□□□□ -0.87
NME3-205ENST00000563854 C1orf195Q5TG92 126 aa9.61□□□□□ -0.87
NME3-205ENST00000563854 LINC00575Q6W349 94 aa9.61□□□□□ -0.87
NME3-205ENST00000563854 IGLV8-61A0A075B6I0 122 aa9.6□□□□□ -0.87
NME3-205ENST00000563854 Q5XG85 94 aa9.6□□□□□ -0.87
NME3-205ENST00000563854 Q6ZQY7 126 aa9.6□□□□□ -0.87
NME3-205ENST00000563854 hADV29S1A0JD25 119 aa9.59□□□□□ -0.87
NME3-205ENST00000563854 SCGB1D1O95968 90 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms