RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 ZNF73O43830 326 aaPredicted RBP8.49□□□□□ -1.05
VPS39-206ENST00000562662 COX6CP09669 75 aa8.49□□□□□ -1.05
VPS39-206ENST00000562662 SCGB1C2P0DMR2 95 aa8.49□□□□□ -1.05
VPS39-206ENST00000562662 C6orf99Q4VX62 202 aa8.49□□□□□ -1.05
VPS39-206ENST00000562662 LYRM7Q5U5X0 104 aa8.49□□□□□ -1.05
VPS39-206ENST00000562662 KRTAP11-1Q8IUC1 163 aa8.49□□□□□ -1.05
VPS39-206ENST00000562662 SPRR1AP35321 89 aa8.48□□□□□ -1.05
VPS39-206ENST00000562662 DIRC1Q969H9 104 aa8.48□□□□□ -1.05
VPS39-206ENST00000562662 TCL1BO95988 128 aa8.47□□□□□ -1.05
VPS39-206ENST00000562662 VAMP3Q15836 100 aa8.47□□□□□ -1.05
VPS39-206ENST00000562662 CIRBP-AS1Q8TBR5 109 aa8.47□□□□□ -1.05
VPS39-206ENST00000562662 CLEC2BQ92478 149 aa8.47□□□□□ -1.05
VPS39-206ENST00000562662 SPCS1Q9Y6A9 102 aa8.47□□□□□ -1.05
VPS39-206ENST00000562662 TRBV7-6A0A0J9YX20 115 aa8.46□□□□□ -1.06
VPS39-206ENST00000562662 KRTAP4-16G5E9R7 235 aaPredicted RBP8.46□□□□□ -1.06
VPS39-206ENST00000562662 K7EP34 96 aa8.46□□□□□ -1.06
VPS39-206ENST00000562662 UBE2BP63146 152 aa8.46□□□□□ -1.06
VPS39-206ENST00000562662 SCXQ7RTU7 201 aa8.46□□□□□ -1.06
VPS39-206ENST00000562662 FAM218AQ96MZ4 157 aa8.46□□□□□ -1.06
VPS39-206ENST00000562662 H0YGX0 51 aa8.45□□□□□ -1.06
VPS39-206ENST00000562662 REG3GQ6UW15 175 aa8.45□□□□□ -1.06
VPS39-206ENST00000562662 TRBV20-1A0A075B6N2 111 aa8.44□□□□□ -1.06
VPS39-206ENST00000562662 LST1O00453 97 aa8.44□□□□□ -1.06
VPS39-206ENST00000562662 COX7BP24311 80 aa8.44□□□□□ -1.06
VPS39-206ENST00000562662 ELOF1P60002 83 aaKnown RBP8.44□□□□□ -1.06
VPS39-206ENST00000562662 B5MCH6 92 aa8.42□□□□□ -1.06
VPS39-206ENST00000562662 HAMPP81172 84 aa8.42□□□□□ -1.06
VPS39-206ENST00000562662 ATXN8Q156A1 80 aa8.42□□□□□ -1.06
VPS39-206ENST00000562662 LINC00528Q8N1L1 170 aa8.42□□□□□ -1.06
VPS39-206ENST00000562662 ETDCA0A1B0GVM5 59 aa8.41□□□□□ -1.06
VPS39-206ENST00000562662 LCE2DQ5TA82 110 aaPredicted RBP8.41□□□□□ -1.06
VPS39-206ENST00000562662 LINC00575Q6W349 94 aa8.41□□□□□ -1.06
VPS39-206ENST00000562662 GTF2H5Q6ZYL4 71 aa8.41□□□□□ -1.06
VPS39-206ENST00000562662 H3BMG7 143 aa8.4□□□□□ -1.06
VPS39-206ENST00000562662 A0A1B0GX51 115 aa8.39□□□□□ -1.07
VPS39-206ENST00000562662 TRACP01848 142 aa8.39□□□□□ -1.07
VPS39-206ENST00000562662 UBE2V1Q13404 147 aa8.39□□□□□ -1.07
VPS39-206ENST00000562662 Q6ZRX8 168 aa8.39□□□□□ -1.07
VPS39-206ENST00000562662 PSORS1C2Q9UIG4 136 aa8.39□□□□□ -1.07
VPS39-206ENST00000562662 VPS13BQ7Z7G8 4022 aa8.39□□□□□ -1.07
VPS39-206ENST00000562662 FAM19A1Q7Z5A9 133 aa8.38□□□□□ -1.07
VPS39-206ENST00000562662 BCE1O60756 84 aa8.37□□□□□ -1.07
VPS39-206ENST00000562662 XGP55808 180 aa8.37□□□□□ -1.07
VPS39-206ENST00000562662 Q9BRP9 147 aa8.37□□□□□ -1.07
VPS39-206ENST00000562662 hADV29S1A0JD25 119 aa8.36□□□□□ -1.07
VPS39-206ENST00000562662 INAFM2P0DMQ5 153 aa8.36□□□□□ -1.07
VPS39-206ENST00000562662 PRLHP81277 87 aa8.36□□□□□ -1.07
VPS39-206ENST00000562662 H0Y9J4 135 aa8.35□□□□□ -1.07
VPS39-206ENST00000562662 KRTAP13-1Q8IUC0 172 aa8.35□□□□□ -1.07
VPS39-206ENST00000562662 SMCR5Q8TEV8 140 aa8.35□□□□□ -1.07
VPS39-206ENST00000562662 PRO0461Q9UI25 63 aa8.35□□□□□ -1.07
VPS39-206ENST00000562662 C9JAW5 83 aa8.34□□□□□ -1.07
VPS39-206ENST00000562662 SLC25A20O43772 301 aa8.34□□□□□ -1.07
VPS39-206ENST00000562662 C1orf137Q5JT78 98 aa8.34□□□□□ -1.07
VPS39-206ENST00000562662 MTURNQ8N3F0 131 aa8.34□□□□□ -1.07
VPS39-206ENST00000562662 DHRS4-AS1Q9P1J3 65 aa8.34□□□□□ -1.07
VPS39-206ENST00000562662 DNAL4O96015 105 aa8.33□□□□□ -1.08
VPS39-206ENST00000562662 EPPK1P58107 5090 aaKnown RBP8.33□□□□□ -1.08
VPS39-206ENST00000562662 FAT1Q14517 4588 aa8.33□□□□□ -1.08
VPS39-206ENST00000562662 HSPG2P98160 4391 aa8.32□□□□□ -1.08
VPS39-206ENST00000562662 ERC2-IT1O76042 136 aa8.32□□□□□ -1.08
VPS39-206ENST00000562662 SNCGO76070 127 aa8.32□□□□□ -1.08
VPS39-206ENST00000562662 UBE2AP49459 152 aa8.32□□□□□ -1.08
VPS39-206ENST00000562662 SMCPP49901 116 aaPredicted RBP8.32□□□□□ -1.08
VPS39-206ENST00000562662 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.31□□□□□ -1.08
VPS39-206ENST00000562662 Q6ZQY7 126 aa8.31□□□□□ -1.08
VPS39-206ENST00000562662 SRRM2Q9UQ35 2752 aaKnown RBP8.31□□□□□ -1.08
VPS39-206ENST00000562662 F8W1H4 67 aa8.29□□□□□ -1.08
VPS39-206ENST00000562662 H3BT86 120 aa8.29□□□□□ -1.08
VPS39-206ENST00000562662 IGLV7-43P04211 117 aa8.29□□□□□ -1.08
VPS39-206ENST00000562662 LINC01600Q96MT4 127 aa8.29□□□□□ -1.08
VPS39-206ENST00000562662 HIGD2AQ9BW72 106 aa8.29□□□□□ -1.08
VPS39-206ENST00000562662 ORMDL1Q9P0S3 153 aa8.29□□□□□ -1.08
VPS39-206ENST00000562662 RYR1P21817 5038 aa8.29□□□□□ -1.08
VPS39-206ENST00000562662 ZNF861PO60384 105 aa8.28□□□□□ -1.08
VPS39-206ENST00000562662 BAALC-AS2P0C853 105 aa8.28□□□□□ -1.08
VPS39-206ENST00000562662 PKHD1L1Q86WI1 4243 aa8.27□□□□□ -1.08
VPS39-206ENST00000562662 LINC01547P58512 204 aaPredicted RBP8.27□□□□□ -1.09
VPS39-206ENST00000562662 OCIAD2Q56VL3 154 aa8.27□□□□□ -1.09
VPS39-206ENST00000562662 ANKRD29Q8N6D5 301 aa8.27□□□□□ -1.09
VPS39-206ENST00000562662 ST20-AS1Q8NBB2 130 aa8.27□□□□□ -1.09
VPS39-206ENST00000562662 SMR3BP02814 79 aaPredicted RBP8.26□□□□□ -1.09
VPS39-206ENST00000562662 IGLV5-48A0A075B6I7 105 aa8.25□□□□□ -1.09
VPS39-206ENST00000562662 CDK2AP2O75956 126 aa8.25□□□□□ -1.09
VPS39-206ENST00000562662 RPL37AP61513 92 aaKnown RBP8.24□□□□□ -1.09
VPS39-206ENST00000562662 H3BQ85 93 aa8.23□□□□□ -1.09
VPS39-206ENST00000562662 TMEM256-PLSCR3K7ERE1 68 aa8.23□□□□□ -1.09
VPS39-206ENST00000562662 Q8N377 158 aa8.23□□□□□ -1.09
VPS39-206ENST00000562662 DEFB105AQ8NG35 78 aa8.22□□□□□ -1.09
VPS39-206ENST00000562662 PPDPFLQ8WWR9 84 aa8.22□□□□□ -1.09
VPS39-206ENST00000562662 GHRHP01286 108 aa8.21□□□□□ -1.1
VPS39-206ENST00000562662 KRTAP10-4P60372 401 aaPredicted RBP8.21□□□□□ -1.1
VPS39-206ENST00000562662 TEX49A0A1B0GTD5 131 aa8.2□□□□□ -1.1
VPS39-206ENST00000562662 SPRR1BP22528 89 aa8.2□□□□□ -1.1
VPS39-206ENST00000562662 ETDBQ3ZM63 59 aa8.2□□□□□ -1.1
VPS39-206ENST00000562662 SPRR4Q96PI1 79 aa8.2□□□□□ -1.1
VPS39-206ENST00000562662 TEN1Q86WV5 123 aa8.19□□□□□ -1.1
VPS39-206ENST00000562662 KIAA1109Q2LD37 5005 aa8.18□□□□□ -1.1
VPS39-206ENST00000562662 GAGE2AQ6NT46 116 aa8.18□□□□□ -1.1
VPS39-206ENST00000562662 SMIM29Q86T20 159 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms