RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 GAGE2BQ13066 116 aa4.88□□□□□ -1.63
VPS39-204ENST00000561818 C9orf129Q5T035 196 aaKnown RBP4.88□□□□□ -1.63
VPS39-204ENST00000561818 Q6Q795 121 aa4.88□□□□□ -1.63
VPS39-204ENST00000561818 C9orf163Q8N9P6 203 aa4.88□□□□□ -1.63
VPS39-204ENST00000561818 IGLV1-50A0A075B6I6 118 aa4.87□□□□□ -1.63
VPS39-204ENST00000561818 RPL37AP8A6NKH3 93 aa4.87□□□□□ -1.63
VPS39-204ENST00000561818 H0Y9J4 135 aa4.87□□□□□ -1.63
VPS39-204ENST00000561818 PRR3P79522 188 aaKnown RBP4.87□□□□□ -1.63
VPS39-204ENST00000561818 Q6ZRX8 168 aa4.87□□□□□ -1.63
VPS39-204ENST00000561818 LINC00643Q86TS7 51 aa4.87□□□□□ -1.63
VPS39-204ENST00000561818 LAMTOR3Q9UHA4 124 aa4.87□□□□□ -1.63
VPS39-204ENST00000561818 Q6ZQY7 126 aa4.86□□□□□ -1.63
VPS39-204ENST00000561818 C7orf33Q8WU49 177 aa4.86□□□□□ -1.63
VPS39-204ENST00000561818 LRCOL1A6NCL2 159 aa4.85□□□□□ -1.63
VPS39-204ENST00000561818 CCKP06307 115 aa4.85□□□□□ -1.63
VPS39-204ENST00000561818 C1orf134Q5TEV5 83 aa4.85□□□□□ -1.63
VPS39-204ENST00000561818 REG3GQ6UW15 175 aa4.85□□□□□ -1.63
VPS39-204ENST00000561818 Q6ZRN7 208 aaPredicted RBP4.85□□□□□ -1.63
VPS39-204ENST00000561818 Q8NDZ9 215 aa4.85□□□□□ -1.63
VPS39-204ENST00000561818 KRTAP1-5Q9BYS1 174 aa4.85□□□□□ -1.63
VPS39-204ENST00000561818 UBL5Q9BZL1 73 aa4.85□□□□□ -1.63
VPS39-204ENST00000561818 C22orf24Q9Y442 160 aa4.85□□□□□ -1.63
VPS39-204ENST00000561818 SLPIP03973 132 aa4.84□□□□□ -1.63
VPS39-204ENST00000561818 GAGE2AQ6NT46 116 aa4.84□□□□□ -1.63
VPS39-204ENST00000561818 Q6ZR54 194 aa4.84□□□□□ -1.63
VPS39-204ENST00000561818 CDIP1Q9H305 208 aa4.84□□□□□ -1.63
VPS39-204ENST00000561818 SERTAD4-AS1Q5TG53 156 aa4.83□□□□□ -1.64
VPS39-204ENST00000561818 SDIM1Q6ZPB5 146 aa4.83□□□□□ -1.64
VPS39-204ENST00000561818 FAM19A5Q7Z5A7 132 aaPredicted RBP4.83□□□□□ -1.64
VPS39-204ENST00000561818 DNAH9Q9NYC9 4486 aa4.83□□□□□ -1.64
VPS39-204ENST00000561818 IGLV5-48A0A075B6I7 105 aa4.82□□□□□ -1.64
VPS39-204ENST00000561818 A0A087WTM6 91 aa4.82□□□□□ -1.64
VPS39-204ENST00000561818 TRBV7-7A0A0K0K1E9 115 aa4.82□□□□□ -1.64
VPS39-204ENST00000561818 B5MCH6 92 aa4.82□□□□□ -1.64
VPS39-204ENST00000561818 F8WEM9 126 aa4.82□□□□□ -1.64
VPS39-204ENST00000561818 NDUFV3P56181 108 aaKnown RBP4.82□□□□□ -1.64
VPS39-204ENST00000561818 UBE2BP63146 152 aa4.82□□□□□ -1.64
VPS39-204ENST00000561818 CASC10Q5T4H9 136 aa4.82□□□□□ -1.64
VPS39-204ENST00000561818 C14orf132Q9NPU4 83 aa4.82□□□□□ -1.64
VPS39-204ENST00000561818 DYNC2H1Q8NCM8 4307 aaKnown RBP4.82□□□□□ -1.64
VPS39-204ENST00000561818 A0A096LNI7 61 aa4.81□□□□□ -1.64
VPS39-204ENST00000561818 KRTAP4-16G5E9R7 235 aaPredicted RBP4.81□□□□□ -1.64
VPS39-204ENST00000561818 FUSP35637 526 aaKnown RBP eCLIP4.81□□□□□ -1.64
VPS39-204ENST00000561818 LINC00476Q8WZB0 136 aa4.81□□□□□ -1.64
VPS39-204ENST00000561818 COL7A1Q02388 2944 aa4.8□□□□□ -1.64
VPS39-204ENST00000561818 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.8□□□□□ -1.64
VPS39-204ENST00000561818 TRBV7-4A0A0J9YYF1 115 aa4.8□□□□□ -1.64
VPS39-204ENST00000561818 A0A1B0GV72 72 aa4.8□□□□□ -1.64
VPS39-204ENST00000561818 EPM2AB3EWF7 344 aa4.8□□□□□ -1.64
VPS39-204ENST00000561818 Q6JHZ5 121 aa4.8□□□□□ -1.64
VPS39-204ENST00000561818 Q6ZQT0 140 aa4.8□□□□□ -1.64
VPS39-204ENST00000561818 ZNF706Q9Y5V0 76 aaPredicted RBP4.8□□□□□ -1.64
VPS39-204ENST00000561818 IGKV2-24A0A0C4DH68 120 aa4.79□□□□□ -1.64
VPS39-204ENST00000561818 LY6G6CO95867 125 aa4.79□□□□□ -1.64
VPS39-204ENST00000561818 XGP55808 180 aa4.79□□□□□ -1.64
VPS39-204ENST00000561818 SPACA4Q8TDM5 124 aa4.79□□□□□ -1.64
VPS39-204ENST00000561818 IGLV5-52A0A0A0MRZ9 124 aa4.78□□□□□ -1.64
VPS39-204ENST00000561818 RTL8CO15255 209 aa4.78□□□□□ -1.64
VPS39-204ENST00000561818 BCE1O60756 84 aa4.78□□□□□ -1.64
VPS39-204ENST00000561818 RPL37AP61513 92 aaKnown RBP4.78□□□□□ -1.64
VPS39-204ENST00000561818 MEGF8Q7Z7M0 2845 aa4.78□□□□□ -1.64
VPS39-204ENST00000561818 UBE2AP49459 152 aa4.77□□□□□ -1.65
VPS39-204ENST00000561818 CXCL6P80162 114 aa4.77□□□□□ -1.65
VPS39-204ENST00000561818 FAM19A1Q7Z5A9 133 aa4.77□□□□□ -1.65
VPS39-204ENST00000561818 DPH3Q96FX2 82 aa4.77□□□□□ -1.65
VPS39-204ENST00000561818 FAM168BA1KXE4 195 aa4.76□□□□□ -1.65
VPS39-204ENST00000561818 MT-ATP8P03928 68 aa4.76□□□□□ -1.65
VPS39-204ENST00000561818 PLAC8Q9NZF1 115 aa4.76□□□□□ -1.65
VPS39-204ENST00000561818 DNAH7Q8WXX0 4024 aa4.76□□□□□ -1.65
VPS39-204ENST00000561818 M0R2N4 97 aa4.75□□□□□ -1.65
VPS39-204ENST00000561818 SPRR1BP22528 89 aa4.75□□□□□ -1.65
VPS39-204ENST00000561818 LINC00336Q6ZUF6 198 aa4.75□□□□□ -1.65
VPS39-204ENST00000561818 KRTAP4-8Q9BYQ9 185 aa4.75□□□□□ -1.65
VPS39-204ENST00000561818 DNAH1Q9P2D7 4330 aa4.74□□□□□ -1.65
VPS39-204ENST00000561818 IGLV8-61A0A075B6I0 122 aa4.74□□□□□ -1.65
VPS39-204ENST00000561818 A0A1W2PNN7 141 aa4.74□□□□□ -1.65
VPS39-204ENST00000561818 ATOX1O00244 68 aa4.74□□□□□ -1.65
VPS39-204ENST00000561818 Q8N377 158 aa4.74□□□□□ -1.65
VPS39-204ENST00000561818 SMIM20Q8N5G0 67 aa4.74□□□□□ -1.65
VPS39-204ENST00000561818 Q9BRP9 147 aa4.74□□□□□ -1.65
VPS39-204ENST00000561818 LINC00846Q9NV44 126 aa4.74□□□□□ -1.65
VPS39-204ENST00000561818 PRKDCP78527 4128 aaKnown RBP4.73□□□□□ -1.65
VPS39-204ENST00000561818 KRTAP7-1Q8IUC3 87 aa4.73□□□□□ -1.65
VPS39-204ENST00000561818 FBN3Q75N90 2809 aa4.72□□□□□ -1.65
VPS39-204ENST00000561818 C1orf137Q5JT78 98 aa4.72□□□□□ -1.65
VPS39-204ENST00000561818 Q8NBF4 154 aa4.72□□□□□ -1.65
VPS39-204ENST00000561818 SMCR5Q8TEV8 140 aa4.72□□□□□ -1.65
VPS39-204ENST00000561818 ANAPC13Q9BS18 74 aa4.72□□□□□ -1.65
VPS39-204ENST00000561818 HIGD2AQ9BW72 106 aa4.72□□□□□ -1.65
VPS39-204ENST00000561818 LINC01547P58512 204 aaPredicted RBP4.71□□□□□ -1.66
VPS39-204ENST00000561818 NREPQ16612 68 aa4.71□□□□□ -1.66
VPS39-204ENST00000561818 DEFB105AQ8NG35 78 aa4.71□□□□□ -1.66
VPS39-204ENST00000561818 SPRR4Q96PI1 79 aa4.71□□□□□ -1.66
VPS39-204ENST00000561818 CHTF8P0CG12 524 aa4.7□□□□□ -1.66
VPS39-204ENST00000561818 CRYGAP11844 174 aa4.7□□□□□ -1.66
VPS39-204ENST00000561818 Q6ZVQ6 151 aa4.7□□□□□ -1.66
VPS39-204ENST00000561818 PHF5AQ7RTV0 110 aaKnown RBP4.7□□□□□ -1.66
VPS39-204ENST00000561818 PRLHP81277 87 aa4.69□□□□□ -1.66
VPS39-204ENST00000561818 SS18L2Q9UHA2 77 aa4.69□□□□□ -1.66
VPS39-204ENST00000561818 DNHD1Q96M86 4753 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms