RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 TIMM17BO60830 172 aa9.05□□□□□ -0.96
VPS39-203ENST00000561797 GAGE2AQ6NT46 116 aa9.05□□□□□ -0.96
VPS39-203ENST00000561797 Q6ZRX8 168 aa9.05□□□□□ -0.96
VPS39-203ENST00000561797 Q9BRP9 147 aa9.05□□□□□ -0.96
VPS39-203ENST00000561797 C20orf202A1L168 122 aa9.04□□□□□ -0.96
VPS39-203ENST00000561797 ATOH7Q8N100 152 aa9.04□□□□□ -0.96
VPS39-203ENST00000561797 OR13C6PQ8NH95 151 aa9.03□□□□□ -0.96
VPS39-203ENST00000561797 SPANXCQ9NY87 97 aa9.03□□□□□ -0.96
VPS39-203ENST00000561797 ZNF73O43830 326 aaPredicted RBP9.02□□□□□ -0.97
VPS39-203ENST00000561797 LINC00483Q53H64 154 aa9.02□□□□□ -0.97
VPS39-203ENST00000561797 ANKRD39Q53RE8 183 aa9.02□□□□□ -0.97
VPS39-203ENST00000561797 JOSD1Q15040 202 aaPredicted RBP9.01□□□□□ -0.97
VPS39-203ENST00000561797 C4orf48Q5BLP8 95 aa9.01□□□□□ -0.97
VPS39-203ENST00000561797 SPAG11AQ6PDA7 123 aa9.01□□□□□ -0.97
VPS39-203ENST00000561797 Q8NBF4 154 aa9.01□□□□□ -0.97
VPS39-203ENST00000561797 SCGB1D4Q6XE38 83 aa9□□□□□ -0.97
VPS39-203ENST00000561797 RNF213Q63HN8 5207 aa8.99□□□□□ -0.97
VPS39-203ENST00000561797 IGLV9-49A0A0B4J1Y8 123 aa8.99□□□□□ -0.97
VPS39-203ENST00000561797 HINT1P49773 126 aaPredicted RBP8.99□□□□□ -0.97
VPS39-203ENST00000561797 CTAG1AP78358 180 aa8.99□□□□□ -0.97
VPS39-203ENST00000561797 CBY1Q9Y3M2 126 aa8.99□□□□□ -0.97
VPS39-203ENST00000561797 S100A1P23297 94 aa8.97□□□□□ -0.97
VPS39-203ENST00000561797 MOBPQ13875 183 aa8.97□□□□□ -0.97
VPS39-203ENST00000561797 SPANXDQ9BXN6 97 aa8.97□□□□□ -0.97
VPS39-203ENST00000561797 IGLV7-46A0A075B6I9 117 aa8.96□□□□□ -0.98
VPS39-203ENST00000561797 ST20-AS1Q8NBB2 130 aa8.96□□□□□ -0.98
VPS39-203ENST00000561797 PCP2Q8IVA1 136 aa8.95□□□□□ -0.98
VPS39-203ENST00000561797 LINC00518Q8N0U6 118 aa8.95□□□□□ -0.98
VPS39-203ENST00000561797 HIST3H2BBQ8N257 126 aa8.95□□□□□ -0.98
VPS39-203ENST00000561797 S100A2P29034 98 aa8.94□□□□□ -0.98
VPS39-203ENST00000561797 AKR1D1P51857 326 aa8.94□□□□□ -0.98
VPS39-203ENST00000561797 SSBP3-AS1Q7Z2R9 100 aa8.93□□□□□ -0.98
VPS39-203ENST00000561797 HIST1H2BLQ99880 126 aa8.93□□□□□ -0.98
VPS39-203ENST00000561797 SPINK1P00995 79 aa8.92□□□□□ -0.98
VPS39-203ENST00000561797 C9orf153Q5TBE3 101 aa8.92□□□□□ -0.98
VPS39-203ENST00000561797 MUSTN1Q8IVN3 82 aa8.92□□□□□ -0.98
VPS39-203ENST00000561797 COPS9Q8WXC6 57 aa8.92□□□□□ -0.98
VPS39-203ENST00000561797 IFITM1P13164 125 aa8.91□□□□□ -0.98
VPS39-203ENST00000561797 C6orf99Q4VX62 202 aa8.91□□□□□ -0.98
VPS39-203ENST00000561797 CDIP1Q9H305 208 aa8.91□□□□□ -0.98
VPS39-203ENST00000561797 S100A6P06703 90 aa8.9□□□□□ -0.98
VPS39-203ENST00000561797 COX7BP24311 80 aa8.9□□□□□ -0.98
VPS39-203ENST00000561797 SNRPEP62304 92 aaKnown RBP8.9□□□□□ -0.98
VPS39-203ENST00000561797 TPRXLQ17RH7 258 aa8.9□□□□□ -0.98
VPS39-203ENST00000561797 DHRS4-AS1Q9P1J3 65 aa8.9□□□□□ -0.98
VPS39-203ENST00000561797 A6NDN8 102 aa8.89□□□□□ -0.99
VPS39-203ENST00000561797 C5orf52A6NGY3 159 aa8.89□□□□□ -0.99
VPS39-203ENST00000561797 ELOF1P60002 83 aaKnown RBP8.89□□□□□ -0.99
VPS39-203ENST00000561797 Q6ZVH6 145 aa8.89□□□□□ -0.99
VPS39-203ENST00000561797 HSBP1L1C9JCN9 74 aa8.87□□□□□ -0.99
VPS39-203ENST00000561797 FP248Q71RG6 208 aaPredicted RBP8.87□□□□□ -0.99
VPS39-203ENST00000561797 SPRR1BP22528 89 aa8.85□□□□□ -0.99
VPS39-203ENST00000561797 DEFB105AQ8NG35 78 aa8.85□□□□□ -0.99
VPS39-203ENST00000561797 TAL2Q16559 108 aa8.84□□□□□ -0.99
VPS39-203ENST00000561797 Q8N377 158 aa8.84□□□□□ -0.99
VPS39-203ENST00000561797 TRBV7-6A0A0J9YX20 115 aa8.83□□□□□ -1
VPS39-203ENST00000561797 RPS29P62273 56 aaKnown RBP8.83□□□□□ -1
VPS39-203ENST00000561797 SLC25A34Q6PIV7 304 aa8.83□□□□□ -1
VPS39-203ENST00000561797 LAMTOR3Q9UHA4 124 aa8.83□□□□□ -1
VPS39-203ENST00000561797 A0A1B0GWB2 263 aa8.82□□□□□ -1
VPS39-203ENST00000561797 SCGB1D1O95968 90 aa8.82□□□□□ -1
VPS39-203ENST00000561797 TRAV13-2A0A0B4J235 113 aa8.81□□□□□ -1
VPS39-203ENST00000561797 SLC25A20O43772 301 aa8.81□□□□□ -1
VPS39-203ENST00000561797 Q1RN00 199 aa8.81□□□□□ -1
VPS39-203ENST00000561797 KRTAP13-3Q3SY46 172 aa8.8□□□□□ -1
VPS39-203ENST00000561797 HRCT1Q6UXD1 115 aa8.8□□□□□ -1
VPS39-203ENST00000561797 SMIM11BQ8TCY0 68 aa8.8□□□□□ -1
VPS39-203ENST00000561797 TEX49A0A1B0GTD5 131 aa8.79□□□□□ -1
VPS39-203ENST00000561797 A4D1N5 150 aa8.77□□□□□ -1.01
VPS39-203ENST00000561797 A0A0U1RQV1 116 aa8.75□□□□□ -1.01
VPS39-203ENST00000561797 LINC01547P58512 204 aaPredicted RBP8.75□□□□□ -1.01
VPS39-203ENST00000561797 SMIM29Q86T20 159 aa8.74□□□□□ -1.01
VPS39-203ENST00000561797 NHP2Q9NX24 153 aaKnown RBP8.74□□□□□ -1.01
VPS39-203ENST00000561797 IGLV5-48A0A075B6I7 105 aa8.73□□□□□ -1.01
VPS39-203ENST00000561797 VAMP3Q15836 100 aa8.73□□□□□ -1.01
VPS39-203ENST00000561797 HIST1H4GQ99525 98 aa8.73□□□□□ -1.01
VPS39-203ENST00000561797 LIMD2Q9BT23 127 aa8.73□□□□□ -1.01
VPS39-203ENST00000561797 PRO1933Q9H354 126 aa8.73□□□□□ -1.01
VPS39-203ENST00000561797 COX8AP10176 69 aa8.72□□□□□ -1.01
VPS39-203ENST00000561797 C12orf57Q99622 126 aa8.72□□□□□ -1.01
VPS39-203ENST00000561797 A0A0G2JQZ4 141 aa8.7□□□□□ -1.02
VPS39-203ENST00000561797 MUC2Q02817 5179 aa8.69□□□□□ -1.02
VPS39-203ENST00000561797 H7C2G1 150 aa8.69□□□□□ -1.02
VPS39-203ENST00000561797 LINC00575Q6W349 94 aa8.69□□□□□ -1.02
VPS39-203ENST00000561797 C14orf144Q96I85 54 aa8.69□□□□□ -1.02
VPS39-203ENST00000561797 CD164Q04900 197 aa8.68□□□□□ -1.02
VPS39-203ENST00000561797 DLEU1O43261 78 aa8.67□□□□□ -1.02
VPS39-203ENST00000561797 SPATA45Q537H7 98 aa8.67□□□□□ -1.02
VPS39-203ENST00000561797 PAM16Q9Y3D7 125 aa8.67□□□□□ -1.02
VPS39-203ENST00000561797 hADV29S1A0JD25 119 aa8.66□□□□□ -1.02
VPS39-203ENST00000561797 ASB16-AS1Q495Z4 193 aa8.66□□□□□ -1.02
VPS39-203ENST00000561797 MUC17Q685J3 4493 aa8.65□□□□□ -1.02
VPS39-203ENST00000561797 SEC61BP60468 96 aaKnown RBP8.65□□□□□ -1.02
VPS39-203ENST00000561797 Q6ZQY7 126 aa8.65□□□□□ -1.02
VPS39-203ENST00000561797 VAMP8Q9BV40 100 aa8.64□□□□□ -1.03
VPS39-203ENST00000561797 F8WEM9 126 aa8.63□□□□□ -1.03
VPS39-203ENST00000561797 XP32Q5T750 250 aa8.63□□□□□ -1.03
VPS39-203ENST00000561797 C9orf92A6NGG3 77 aa8.62□□□□□ -1.03
VPS39-203ENST00000561797 CFC1BP0CG36 223 aa8.61□□□□□ -1.03
VPS39-203ENST00000561797 CFC1P0CG37 223 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms