RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 LINC00337Q8N6G1 96 aa2.61□□□□□ -1.99
SNX1-205ENST00000559339 Q8NDZ9 215 aa2.61□□□□□ -1.99
SNX1-205ENST00000559339 SPANXCQ9NY87 97 aa2.61□□□□□ -1.99
SNX1-205ENST00000559339 LRP1Q07954 4544 aaKnown RBP2.61□□□□□ -1.99
SNX1-205ENST00000559339 TRAV23DV6A0A075B6W5 121 aa2.6□□□□□ -1.99
SNX1-205ENST00000559339 A0A087X002 238 aa2.6□□□□□ -1.99
SNX1-205ENST00000559339 NPC2P61916 151 aa2.6□□□□□ -1.99
SNX1-205ENST00000559339 ADAMTSL4-AS1Q5T5F5 129 aa2.6□□□□□ -1.99
SNX1-205ENST00000559339 LINC00518Q8N0U6 118 aa2.6□□□□□ -1.99
SNX1-205ENST00000559339 ANAPC11Q9NYG5 84 aa2.6□□□□□ -1.99
SNX1-205ENST00000559339 ZNF73O43830 326 aaPredicted RBP2.59□□□□□ -1.99
SNX1-205ENST00000559339 IGLV6-57P01721 117 aa2.59□□□□□ -1.99
SNX1-205ENST00000559339 SPRR1AP35321 89 aa2.59□□□□□ -1.99
SNX1-205ENST00000559339 Q6ZVH6 145 aa2.59□□□□□ -1.99
SNX1-205ENST00000559339 ATOH7Q8N100 152 aa2.59□□□□□ -1.99
SNX1-205ENST00000559339 OR13C6PQ8NH95 151 aa2.59□□□□□ -1.99
SNX1-205ENST00000559339 LINC00308Q8TCZ7 52 aa2.59□□□□□ -1.99
SNX1-205ENST00000559339 HIST1H2BLQ99880 126 aa2.59□□□□□ -1.99
SNX1-205ENST00000559339 C9orf118A6NHY6 69 aa2.58□□□□□ -2
SNX1-205ENST00000559339 B5MCH6 92 aa2.58□□□□□ -2
SNX1-205ENST00000559339 TSPAN13O95857 204 aa2.58□□□□□ -2
SNX1-205ENST00000559339 IFITM1P13164 125 aa2.58□□□□□ -2
SNX1-205ENST00000559339 CTAG1AP78358 180 aa2.58□□□□□ -2
SNX1-205ENST00000559339 PRR4Q16378 134 aa2.58□□□□□ -2
SNX1-205ENST00000559339 KRTAP19-4Q3LI73 84 aa2.58□□□□□ -2
SNX1-205ENST00000559339 Q6ZRX8 168 aa2.58□□□□□ -2
SNX1-205ENST00000559339 HIST3H2BBQ8N257 126 aa2.58□□□□□ -2
SNX1-205ENST00000559339 LINC00304Q8N9R0 145 aa2.58□□□□□ -2
SNX1-205ENST00000559339 SMCR5Q8TEV8 140 aa2.58□□□□□ -2
SNX1-205ENST00000559339 SPRR4Q96PI1 79 aa2.58□□□□□ -2
SNX1-205ENST00000559339 LITAFQ99732 161 aa2.58□□□□□ -2
SNX1-205ENST00000559339 SPANXDQ9BXN6 97 aa2.58□□□□□ -2
SNX1-205ENST00000559339 TTTY13Q9BZ97 58 aa2.58□□□□□ -2
SNX1-205ENST00000559339 A6NDN8 102 aa2.57□□□□□ -2
SNX1-205ENST00000559339 C5orf52A6NGY3 159 aa2.57□□□□□ -2
SNX1-205ENST00000559339 KRTAP4-16G5E9R7 235 aaPredicted RBP2.57□□□□□ -2
SNX1-205ENST00000559339 SCGB1D1O95968 90 aa2.57□□□□□ -2
SNX1-205ENST00000559339 GAGE2AQ6NT46 116 aa2.57□□□□□ -2
SNX1-205ENST00000559339 SPAG11AQ6PDA7 123 aa2.57□□□□□ -2
SNX1-205ENST00000559339 SLC25A34Q6PIV7 304 aa2.57□□□□□ -2
SNX1-205ENST00000559339 SOSTDC1Q6X4U4 206 aa2.57□□□□□ -2
SNX1-205ENST00000559339 PPDPFQ9H3Y8 114 aa2.57□□□□□ -2
SNX1-205ENST00000559339 DHRS4-AS1Q9P1J3 65 aa2.57□□□□□ -2
SNX1-205ENST00000559339 TRAV13-2A0A0B4J235 113 aa2.56□□□□□ -2
SNX1-205ENST00000559339 KRTAP13-2Q52LG2 175 aa2.56□□□□□ -2
SNX1-205ENST00000559339 PCP2Q8IVA1 136 aa2.56□□□□□ -2
SNX1-205ENST00000559339 TNXBP22105 4242 aa2.56□□□□□ -2
SNX1-205ENST00000559339 PKHD1L1Q86WI1 4243 aa2.56□□□□□ -2
SNX1-205ENST00000559339 IGLV9-49A0A0B4J1Y8 123 aa2.55□□□□□ -2
SNX1-205ENST00000559339 A4D1N5 150 aa2.55□□□□□ -2
SNX1-205ENST00000559339 SPINK1P00995 79 aa2.55□□□□□ -2
SNX1-205ENST00000559339 COX7BP24311 80 aa2.55□□□□□ -2
SNX1-205ENST00000559339 C6orf99Q4VX62 202 aa2.55□□□□□ -2
SNX1-205ENST00000559339 LINC00483Q53H64 154 aa2.55□□□□□ -2
SNX1-205ENST00000559339 SSBP3-AS1Q7Z2R9 100 aa2.55□□□□□ -2
SNX1-205ENST00000559339 MUSTN1Q8IVN3 82 aa2.55□□□□□ -2
SNX1-205ENST00000559339 Q9BRP9 147 aa2.55□□□□□ -2
SNX1-205ENST00000559339 FAT3Q8TDW7 4589 aa2.55□□□□□ -2
SNX1-205ENST00000559339 UBR4Q5T4S7 5183 aa2.55□□□□□ -2
SNX1-205ENST00000559339 TRBV7-6A0A0J9YX20 115 aa2.54□□□□□ -2
SNX1-205ENST00000559339 A0A1B0GWB2 263 aa2.54□□□□□ -2
SNX1-205ENST00000559339 SLC25A20O43772 301 aa2.54□□□□□ -2
SNX1-205ENST00000559339 ERC2-IT1O76042 136 aa2.54□□□□□ -2
SNX1-205ENST00000559339 ELOF1P60002 83 aaKnown RBP2.54□□□□□ -2
SNX1-205ENST00000559339 MOBPQ13875 183 aa2.54□□□□□ -2
SNX1-205ENST00000559339 VAMP3Q15836 100 aa2.54□□□□□ -2
SNX1-205ENST00000559339 TAL2Q16559 108 aa2.54□□□□□ -2
SNX1-205ENST00000559339 C9orf153Q5TBE3 101 aa2.54□□□□□ -2
SNX1-205ENST00000559339 C3orf22Q8N5N4 141 aa2.54□□□□□ -2
SNX1-205ENST00000559339 Q8NBF4 154 aa2.54□□□□□ -2
SNX1-205ENST00000559339 HIST1H4GQ99525 98 aa2.54□□□□□ -2
SNX1-205ENST00000559339 NHP2Q9NX24 153 aaKnown RBP2.54□□□□□ -2
SNX1-205ENST00000559339 LAMTOR3Q9UHA4 124 aa2.54□□□□□ -2
SNX1-205ENST00000559339 KRTAP4-8Q9BYQ9 185 aa2.53□□□□□ -2
SNX1-205ENST00000559339 IGLV7-46A0A075B6I9 117 aa2.52□□□□□ -2.01
SNX1-205ENST00000559339 TEX49A0A1B0GTD5 131 aa2.52□□□□□ -2.01
SNX1-205ENST00000559339 DLEU1O43261 78 aa2.52□□□□□ -2.01
SNX1-205ENST00000559339 SNCGO76070 127 aa2.52□□□□□ -2.01
SNX1-205ENST00000559339 COX8AP10176 69 aa2.52□□□□□ -2.01
SNX1-205ENST00000559339 RPS29P62273 56 aaKnown RBP2.52□□□□□ -2.01
SNX1-205ENST00000559339 BVES-AS1Q5T3Y7 98 aa2.52□□□□□ -2.01
SNX1-205ENST00000559339 FP248Q71RG6 208 aaPredicted RBP2.52□□□□□ -2.01
SNX1-205ENST00000559339 ST20-AS1Q8NBB2 130 aa2.52□□□□□ -2.01
SNX1-205ENST00000559339 DEFB105AQ8NG35 78 aa2.52□□□□□ -2.01
SNX1-205ENST00000559339 SMIM11BQ8TCY0 68 aa2.52□□□□□ -2.01
SNX1-205ENST00000559339 RETNLBQ9BQ08 111 aa2.52□□□□□ -2.01
SNX1-205ENST00000559339 VAMP8Q9BV40 100 aa2.52□□□□□ -2.01
SNX1-205ENST00000559339 PAM16Q9Y3D7 125 aa2.52□□□□□ -2.01
SNX1-205ENST00000559339 SPRR1BP22528 89 aa2.51□□□□□ -2.01
SNX1-205ENST00000559339 TPRXLQ17RH7 258 aa2.51□□□□□ -2.01
SNX1-205ENST00000559339 SPATA45Q537H7 98 aa2.51□□□□□ -2.01
SNX1-205ENST00000559339 C14orf144Q96I85 54 aa2.51□□□□□ -2.01
SNX1-205ENST00000559339 HMCN2Q8NDA2 5059 aa2.51□□□□□ -2.01
SNX1-205ENST00000559339 hADV29S1A0JD25 119 aa2.5□□□□□ -2.01
SNX1-205ENST00000559339 F8WEM9 126 aa2.5□□□□□ -2.01
SNX1-205ENST00000559339 Q1RN00 199 aa2.5□□□□□ -2.01
SNX1-205ENST00000559339 RAB37Q96AX2 223 aa2.5□□□□□ -2.01
SNX1-205ENST00000559339 LIMD2Q9BT23 127 aa2.5□□□□□ -2.01
SNX1-205ENST00000559339 PRO1933Q9H354 126 aa2.5□□□□□ -2.01
SNX1-205ENST00000559339 HIGD1BQ9P298 99 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms