RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 ZNF73O43830 326 aaPredicted RBP4.83□□□□□ -1.64
VPS13C-206ENST00000558338 SEC61BP60468 96 aaKnown RBP4.83□□□□□ -1.64
VPS13C-206ENST00000558338 Q6ZRU5 148 aa4.83□□□□□ -1.64
VPS13C-206ENST00000558338 HIVEP1P15822 2718 aa4.82□□□□□ -1.64
VPS13C-206ENST00000558338 ELOF1P60002 83 aaKnown RBP4.82□□□□□ -1.64
VPS13C-206ENST00000558338 RBM3P98179 157 aaKnown RBP4.82□□□□□ -1.64
VPS13C-206ENST00000558338 RMI2Q96E14 147 aa4.82□□□□□ -1.64
VPS13C-206ENST00000558338 XAGE1AQ9HD64 81 aa4.82□□□□□ -1.64
VPS13C-206ENST00000558338 CCDC179H3BU77 68 aa4.81□□□□□ -1.64
VPS13C-206ENST00000558338 HIST1H4AP62805 103 aaKnown RBP4.81□□□□□ -1.64
VPS13C-206ENST00000558338 UBL5Q9BZL1 73 aa4.81□□□□□ -1.64
VPS13C-206ENST00000558338 LAMTOR3Q9UHA4 124 aa4.81□□□□□ -1.64
VPS13C-206ENST00000558338 NBEAL2Q6ZNJ1 2754 aa4.81□□□□□ -1.64
VPS13C-206ENST00000558338 SYCNQ0VAF6 134 aa4.81□□□□□ -1.64
VPS13C-206ENST00000558338 Q6ZQY7 126 aa4.81□□□□□ -1.64
VPS13C-206ENST00000558338 DSCR8Q96T75 97 aa4.81□□□□□ -1.64
VPS13C-206ENST00000558338 TENM1Q9UKZ4 2725 aa4.8□□□□□ -1.64
VPS13C-206ENST00000558338 UQCRQO14949 82 aa4.8□□□□□ -1.64
VPS13C-206ENST00000558338 TLX1NBP0CAT3 122 aa4.8□□□□□ -1.64
VPS13C-206ENST00000558338 Q6ZQT0 140 aa4.8□□□□□ -1.64
VPS13C-206ENST00000558338 ATRQ13535 2644 aa4.8□□□□□ -1.64
VPS13C-206ENST00000558338 DNAH3Q8TD57 4116 aa4.8□□□□□ -1.64
VPS13C-206ENST00000558338 NKAPP1Q8N9T2 125 aa4.79□□□□□ -1.64
VPS13C-206ENST00000558338 TM2D3Q9BRN9 247 aa4.79□□□□□ -1.64
VPS13C-206ENST00000558338 CMYA5Q8N3K9 4069 aa4.79□□□□□ -1.64
VPS13C-206ENST00000558338 IGKV3D-7A0A0C4DH55 119 aa4.79□□□□□ -1.64
VPS13C-206ENST00000558338 FAM19A1Q7Z5A9 133 aa4.79□□□□□ -1.64
VPS13C-206ENST00000558338 C3orf22Q8N5N4 141 aa4.79□□□□□ -1.64
VPS13C-206ENST00000558338 TRRAPQ9Y4A5 3859 aa4.78□□□□□ -1.64
VPS13C-206ENST00000558338 Q6ZRP5 223 aa4.78□□□□□ -1.64
VPS13C-206ENST00000558338 COX7CP15954 63 aa4.77□□□□□ -1.65
VPS13C-206ENST00000558338 UPK3BQ9BT76 320 aa4.77□□□□□ -1.65
VPS13C-206ENST00000558338 C9orf153Q5TBE3 101 aa4.77□□□□□ -1.65
VPS13C-206ENST00000558338 LINC00588Q9Y4M8 146 aa4.77□□□□□ -1.65
VPS13C-206ENST00000558338 IGLV5-37A0A075B6J1 123 aa4.76□□□□□ -1.65
VPS13C-206ENST00000558338 KCNQ1DNQ9H478 68 aa4.76□□□□□ -1.65
VPS13C-206ENST00000558338 SS18L2Q9UHA2 77 aa4.76□□□□□ -1.65
VPS13C-206ENST00000558338 TRBV7-4A0A0J9YYF1 115 aa4.75□□□□□ -1.65
VPS13C-206ENST00000558338 F8P00451 2351 aa4.75□□□□□ -1.65
VPS13C-206ENST00000558338 SERP2Q8N6R1 65 aa4.75□□□□□ -1.65
VPS13C-206ENST00000558338 DHRS4-AS1Q9P1J3 65 aa4.75□□□□□ -1.65
VPS13C-206ENST00000558338 K7EIL1 84 aa4.74□□□□□ -1.65
VPS13C-206ENST00000558338 BCE1O60756 84 aa4.74□□□□□ -1.65
VPS13C-206ENST00000558338 CRYGAP11844 174 aa4.74□□□□□ -1.65
VPS13C-206ENST00000558338 CXCL6P80162 114 aa4.74□□□□□ -1.65
VPS13C-206ENST00000558338 LOC107984640A0A0U1RRK4 108 aa4.73□□□□□ -1.65
VPS13C-206ENST00000558338 Q6ZVQ6 151 aa4.73□□□□□ -1.65
VPS13C-206ENST00000558338 C7orf33Q8WU49 177 aa4.73□□□□□ -1.65
VPS13C-206ENST00000558338 A0A087WVE0 104 aa4.73□□□□□ -1.65
VPS13C-206ENST00000558338 KRTAP9-3Q9BYQ3 159 aa4.73□□□□□ -1.65
VPS13C-206ENST00000558338 SMIM20Q8N5G0 67 aa4.72□□□□□ -1.65
VPS13C-206ENST00000558338 ETDCA0A1B0GVM5 59 aa4.71□□□□□ -1.66
VPS13C-206ENST00000558338 A0A1B0GW54 56 aa4.71□□□□□ -1.66
VPS13C-206ENST00000558338 LINC01547P58512 204 aaPredicted RBP4.71□□□□□ -1.66
VPS13C-206ENST00000558338 ANK2Q01484 3957 aa4.71□□□□□ -1.66
VPS13C-206ENST00000558338 IGLV1-50A0A075B6I6 118 aa4.71□□□□□ -1.66
VPS13C-206ENST00000558338 SPRR1AP35321 89 aa4.71□□□□□ -1.66
VPS13C-206ENST00000558338 HAMPP81172 84 aa4.71□□□□□ -1.66
VPS13C-206ENST00000558338 Q6ZRX8 168 aa4.71□□□□□ -1.66
VPS13C-206ENST00000558338 PRB2P02812 416 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-206ENST00000558338 MRPL55Q7Z7F7 128 aaKnown RBP4.7□□□□□ -1.66
VPS13C-206ENST00000558338 PKIGQ9Y2B9 76 aa4.7□□□□□ -1.66
VPS13C-206ENST00000558338 M0R2N4 97 aa4.69□□□□□ -1.66
VPS13C-206ENST00000558338 CD164Q04900 197 aa4.69□□□□□ -1.66
VPS13C-206ENST00000558338 C4orf26Q17RF5 130 aa4.69□□□□□ -1.66
VPS13C-206ENST00000558338 C14orf177Q52M58 125 aa4.69□□□□□ -1.66
VPS13C-206ENST00000558338 KRTAP4-16G5E9R7 235 aaPredicted RBP4.69□□□□□ -1.66
VPS13C-206ENST00000558338 UBE2DNLQ8IWF7 75 aa4.69□□□□□ -1.66
VPS13C-206ENST00000558338 IGLV5-48A0A075B6I7 105 aa4.68□□□□□ -1.66
VPS13C-206ENST00000558338 TMEM258P61165 79 aa4.68□□□□□ -1.66
VPS13C-206ENST00000558338 CNBPP62633 177 aaKnown RBP4.68□□□□□ -1.66
VPS13C-206ENST00000558338 KRTAP19-4Q3LI73 84 aa4.68□□□□□ -1.66
VPS13C-206ENST00000558338 CASC10Q5T4H9 136 aa4.68□□□□□ -1.66
VPS13C-206ENST00000558338 TRAV7A0A075B6U4 112 aa4.67□□□□□ -1.66
VPS13C-206ENST00000558338 RPL37AP8A6NKH3 93 aa4.67□□□□□ -1.66
VPS13C-206ENST00000558338 PSCAO43653 123 aa4.67□□□□□ -1.66
VPS13C-206ENST00000558338 FUSP35637 526 aaKnown RBP eCLIP4.67□□□□□ -1.66
VPS13C-206ENST00000558338 FAM19A5Q7Z5A7 132 aaPredicted RBP4.67□□□□□ -1.66
VPS13C-206ENST00000558338 Q8N377 158 aa4.67□□□□□ -1.66
VPS13C-206ENST00000558338 DNAH1Q9P2D7 4330 aa4.67□□□□□ -1.66
VPS13C-206ENST00000558338 REG3GQ6UW15 175 aa4.66□□□□□ -1.66
VPS13C-206ENST00000558338 HUWE1Q7Z6Z7 4374 aaKnown RBP4.66□□□□□ -1.66
VPS13C-206ENST00000558338 FAM168BA1KXE4 195 aa4.66□□□□□ -1.66
VPS13C-206ENST00000558338 C16orf90A8MZG2 172 aa4.66□□□□□ -1.66
VPS13C-206ENST00000558338 NREPQ16612 68 aa4.66□□□□□ -1.66
VPS13C-206ENST00000558338 DEFB105AQ8NG35 78 aa4.66□□□□□ -1.66
VPS13C-206ENST00000558338 Q9BRP9 147 aa4.66□□□□□ -1.66
VPS13C-206ENST00000558338 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.66□□□□□ -1.66
VPS13C-206ENST00000558338 FBN1P35555 2871 aaKnown RBP4.66□□□□□ -1.66
VPS13C-206ENST00000558338 UBE2BP63146 152 aa4.65□□□□□ -1.66
VPS13C-206ENST00000558338 B9D2Q9BPU9 175 aa4.65□□□□□ -1.66
VPS13C-206ENST00000558338 TENM3Q9P273 2699 aa4.65□□□□□ -1.67
VPS13C-206ENST00000558338 KRTAP23-1A1A580 65 aa4.64□□□□□ -1.67
VPS13C-206ENST00000558338 CDK2AP2O75956 126 aa4.64□□□□□ -1.67
VPS13C-206ENST00000558338 APLNQ9ULZ1 77 aa4.64□□□□□ -1.67
VPS13C-206ENST00000558338 MAST4O15021 2626 aa4.64□□□□□ -1.67
VPS13C-206ENST00000558338 BAHCC1Q9P281 2608 aa4.64□□□□□ -1.67
VPS13C-206ENST00000558338 F8WEM9 126 aa4.64□□□□□ -1.67
VPS13C-206ENST00000558338 KRTAP7-1Q8IUC3 87 aa4.64□□□□□ -1.67
VPS13C-206ENST00000558338 NUPR2A6NF83 97 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms