RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 PYY3Q5JQD4 70 aa8.64□□□□□ -1.03
USP3-205ENST00000557884 OR13C6PQ8NH95 151 aa8.64□□□□□ -1.03
USP3-205ENST00000557884 C14orf144Q96I85 54 aa8.64□□□□□ -1.03
USP3-205ENST00000557884 LINC01600Q96MT4 127 aa8.64□□□□□ -1.03
USP3-205ENST00000557884 SMCPP49901 116 aaPredicted RBP8.63□□□□□ -1.03
USP3-205ENST00000557884 Q6ZVH6 145 aa8.63□□□□□ -1.03
USP3-205ENST00000557884 COPS9Q8WXC6 57 aa8.63□□□□□ -1.03
USP3-205ENST00000557884 LOC100996750A0A140TA64 210 aa8.62□□□□□ -1.03
USP3-205ENST00000557884 ETDCA0A1B0GVM5 59 aa8.62□□□□□ -1.03
USP3-205ENST00000557884 SPRR1AP35321 89 aa8.62□□□□□ -1.03
USP3-205ENST00000557884 KRTAP4-6Q9BYQ5 205 aa8.62□□□□□ -1.03
USP3-205ENST00000557884 TRAV23DV6A0A075B6W5 121 aa8.61□□□□□ -1.03
USP3-205ENST00000557884 KRTAP1-4P0C5Y4 121 aa8.61□□□□□ -1.03
USP3-205ENST00000557884 LINC00337Q8N6G1 96 aa8.61□□□□□ -1.03
USP3-205ENST00000557884 HIGD2AQ9BW72 106 aa8.61□□□□□ -1.03
USP3-205ENST00000557884 KRTAP4-16G5E9R7 235 aaPredicted RBP8.6□□□□□ -1.03
USP3-205ENST00000557884 PRR26Q8N8Z3 221 aa8.6□□□□□ -1.03
USP3-205ENST00000557884 DLEU1O43261 78 aa8.59□□□□□ -1.03
USP3-205ENST00000557884 LINC00518Q8N0U6 118 aa8.59□□□□□ -1.03
USP3-205ENST00000557884 KRTAP10-8P60410 259 aa8.58□□□□□ -1.04
USP3-205ENST00000557884 SLC25A34Q6PIV7 304 aa8.58□□□□□ -1.04
USP3-205ENST00000557884 PPDPFQ9H3Y8 114 aa8.58□□□□□ -1.04
USP3-205ENST00000557884 B5MCH6 92 aa8.57□□□□□ -1.04
USP3-205ENST00000557884 ZNF73O43830 326 aaPredicted RBP8.57□□□□□ -1.04
USP3-205ENST00000557884 HIST1H4GQ99525 98 aa8.57□□□□□ -1.04
USP3-205ENST00000557884 ANAPC11Q9NYG5 84 aa8.57□□□□□ -1.04
USP3-205ENST00000557884 A6NDN8 102 aa8.56□□□□□ -1.04
USP3-205ENST00000557884 A4D1N5 150 aa8.55□□□□□ -1.04
USP3-205ENST00000557884 SMCR5Q8TEV8 140 aa8.55□□□□□ -1.04
USP3-205ENST00000557884 CBY1Q9Y3M2 126 aa8.55□□□□□ -1.04
USP3-205ENST00000557884 Q6ZRX8 168 aa8.54□□□□□ -1.04
USP3-205ENST00000557884 C2orf91Q6ZV80 131 aa8.54□□□□□ -1.04
USP3-205ENST00000557884 LORP23490 312 aaPredicted RBP8.53□□□□□ -1.04
USP3-205ENST00000557884 C12orf57Q99622 126 aa8.53□□□□□ -1.04
USP3-205ENST00000557884 Q9BRP9 147 aa8.53□□□□□ -1.04
USP3-205ENST00000557884 HIGD1BQ9P298 99 aa8.53□□□□□ -1.04
USP3-205ENST00000557884 A0A087X002 238 aa8.52□□□□□ -1.05
USP3-205ENST00000557884 TRAV13-2A0A0B4J235 113 aa8.52□□□□□ -1.05
USP3-205ENST00000557884 ERC2-IT1O76042 136 aa8.52□□□□□ -1.05
USP3-205ENST00000557884 HINT1P49773 126 aaPredicted RBP8.52□□□□□ -1.05
USP3-205ENST00000557884 C6orf99Q4VX62 202 aa8.51□□□□□ -1.05
USP3-205ENST00000557884 SPRR4Q96PI1 79 aa8.51□□□□□ -1.05
USP3-205ENST00000557884 CRYGAP11844 174 aa8.5□□□□□ -1.05
USP3-205ENST00000557884 RPL13AP40429 203 aaKnown RBP8.5□□□□□ -1.05
USP3-205ENST00000557884 COX7BP24311 80 aa8.49□□□□□ -1.05
USP3-205ENST00000557884 ZNF706Q9Y5V0 76 aaPredicted RBP8.49□□□□□ -1.05
USP3-205ENST00000557884 FAM229BQ4G0N7 80 aa8.48□□□□□ -1.05
USP3-205ENST00000557884 SMIM11BQ8TCY0 68 aa8.48□□□□□ -1.05
USP3-205ENST00000557884 KRTAP13-2Q52LG2 175 aa8.47□□□□□ -1.05
USP3-205ENST00000557884 GAGE2AQ6NT46 116 aa8.47□□□□□ -1.05
USP3-205ENST00000557884 ELOF1P60002 83 aaKnown RBP8.46□□□□□ -1.06
USP3-205ENST00000557884 CEND1Q8N111 149 aa8.46□□□□□ -1.06
USP3-205ENST00000557884 TYMSOSQ8TAI1 123 aa8.46□□□□□ -1.06
USP3-205ENST00000557884 HMCN2Q8NDA2 5059 aa8.45□□□□□ -1.06
USP3-205ENST00000557884 C3orf22Q8N5N4 141 aa8.45□□□□□ -1.06
USP3-205ENST00000557884 ST20-AS1Q8NBB2 130 aa8.45□□□□□ -1.06
USP3-205ENST00000557884 UQCR10Q9UDW1 63 aa8.45□□□□□ -1.06
USP3-205ENST00000557884 TRBV7-6A0A0J9YX20 115 aa8.44□□□□□ -1.06
USP3-205ENST00000557884 TAL2Q16559 108 aa8.44□□□□□ -1.06
USP3-205ENST00000557884 DHRS4-AS1Q9P1J3 65 aa8.44□□□□□ -1.06
USP3-205ENST00000557884 A0A1B0GWB2 263 aa8.43□□□□□ -1.06
USP3-205ENST00000557884 H7C2G1 150 aa8.43□□□□□ -1.06
USP3-205ENST00000557884 CFC1BP0CG36 223 aa8.43□□□□□ -1.06
USP3-205ENST00000557884 CFC1P0CG37 223 aa8.43□□□□□ -1.06
USP3-205ENST00000557884 FXYD2P54710 66 aa8.43□□□□□ -1.06
USP3-205ENST00000557884 RAB37Q96AX2 223 aa8.43□□□□□ -1.06
USP3-205ENST00000557884 PRO1933Q9H354 126 aa8.43□□□□□ -1.06
USP3-205ENST00000557884 SMIM6P0DI80 62 aa8.42□□□□□ -1.06
USP3-205ENST00000557884 LINC00483Q53H64 154 aa8.42□□□□□ -1.06
USP3-205ENST00000557884 LOC105371267A0A1B0GV96 52 aa8.41□□□□□ -1.06
USP3-205ENST00000557884 HSD52Q0P140 79 aa8.41□□□□□ -1.06
USP3-205ENST00000557884 A0A0B4J2C4 111 aa8.39□□□□□ -1.07
USP3-205ENST00000557884 TMEM238LA0A1B0GVL6 79 aa8.39□□□□□ -1.07
USP3-205ENST00000557884 A6NJY4 79 aa8.39□□□□□ -1.07
USP3-205ENST00000557884 VAMP3Q15836 100 aa8.39□□□□□ -1.07
USP3-205ENST00000557884 IGLV9-49A0A0B4J1Y8 123 aa8.38□□□□□ -1.07
USP3-205ENST00000557884 TSPAN13O95857 204 aa8.38□□□□□ -1.07
USP3-205ENST00000557884 DEFB105AQ8NG35 78 aa8.38□□□□□ -1.07
USP3-205ENST00000557884 LINC00304Q8N9R0 145 aa8.37□□□□□ -1.07
USP3-205ENST00000557884 MOBPQ13875 183 aa8.36□□□□□ -1.07
USP3-205ENST00000557884 Q1RN00 199 aa8.36□□□□□ -1.07
USP3-205ENST00000557884 NHP2Q9NX24 153 aaKnown RBP8.36□□□□□ -1.07
USP3-205ENST00000557884 K7ERJ3 54 aa8.35□□□□□ -1.07
USP3-205ENST00000557884 SLC25A20O43772 301 aa8.35□□□□□ -1.07
USP3-205ENST00000557884 PRO1854Q9UHT4 67 aa8.35□□□□□ -1.07
USP3-205ENST00000557884 LINC00575Q6W349 94 aa8.34□□□□□ -1.07
USP3-205ENST00000557884 Q8NBF4 154 aa8.34□□□□□ -1.07
USP3-205ENST00000557884 SPRR1BP22528 89 aa8.33□□□□□ -1.08
USP3-205ENST00000557884 BVES-AS1Q5T3Y7 98 aa8.33□□□□□ -1.08
USP3-205ENST00000557884 C9orf153Q5TBE3 101 aa8.33□□□□□ -1.08
USP3-205ENST00000557884 TEX49A0A1B0GTD5 131 aa8.31□□□□□ -1.08
USP3-205ENST00000557884 hADV29S1A0JD25 119 aa8.31□□□□□ -1.08
USP3-205ENST00000557884 LINC01547P58512 204 aaPredicted RBP8.31□□□□□ -1.08
USP3-205ENST00000557884 CTAG1AP78358 180 aa8.3□□□□□ -1.08
USP3-205ENST00000557884 LAMTOR3Q9UHA4 124 aa8.3□□□□□ -1.08
USP3-205ENST00000557884 IGLV5-48A0A075B6I7 105 aa8.29□□□□□ -1.08
USP3-205ENST00000557884 C4orf48Q5BLP8 95 aa8.29□□□□□ -1.08
USP3-205ENST00000557884 Q6ZQY7 126 aa8.29□□□□□ -1.08
USP3-205ENST00000557884 SSBP3-AS1Q7Z2R9 100 aa8.28□□□□□ -1.08
USP3-205ENST00000557884 Q8N377 158 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms