RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 SERTAD4-AS1Q5TG53 156 aa8.79□□□□□ -1
SHMT2-222ENST00000555774 DHRS4-AS1Q9P1J3 65 aa8.79□□□□□ -1
SHMT2-222ENST00000555774 PRYO14603 147 aa8.79□□□□□ -1
SHMT2-222ENST00000555774 LINC00588Q9Y4M8 146 aa8.77□□□□□ -1.01
SHMT2-222ENST00000555774 A0A1B0GW54 56 aa8.76□□□□□ -1.01
SHMT2-222ENST00000555774 DPH3Q96FX2 82 aa8.76□□□□□ -1.01
SHMT2-222ENST00000555774 IGLV5-48A0A075B6I7 105 aa8.75□□□□□ -1.01
SHMT2-222ENST00000555774 SPRR1AP35321 89 aa8.75□□□□□ -1.01
SHMT2-222ENST00000555774 Q6ZRX8 168 aa8.75□□□□□ -1.01
SHMT2-222ENST00000555774 C20orf197Q8N268 126 aa8.75□□□□□ -1.01
SHMT2-222ENST00000555774 IGLV1-50A0A075B6I6 118 aa8.74□□□□□ -1.01
SHMT2-222ENST00000555774 KRTAP4-16G5E9R7 235 aaPredicted RBP8.74□□□□□ -1.01
SHMT2-222ENST00000555774 Q8N377 158 aa8.74□□□□□ -1.01
SHMT2-222ENST00000555774 DNAH3Q8TD57 4116 aa8.74□□□□□ -1.01
SHMT2-222ENST00000555774 TM2D3Q9BRN9 247 aa8.73□□□□□ -1.01
SHMT2-222ENST00000555774 CMYA5Q8N3K9 4069 aa8.72□□□□□ -1.01
SHMT2-222ENST00000555774 KLKP1Q107X0 134 aa8.72□□□□□ -1.01
SHMT2-222ENST00000555774 NREPQ16612 68 aa8.72□□□□□ -1.01
SHMT2-222ENST00000555774 ETDCA0A1B0GVM5 59 aa8.72□□□□□ -1.01
SHMT2-222ENST00000555774 SCXQ7RTU7 201 aa8.71□□□□□ -1.01
SHMT2-222ENST00000555774 DEFB105AQ8NG35 78 aa8.7□□□□□ -1.02
SHMT2-222ENST00000555774 CASC10Q5T4H9 136 aa8.7□□□□□ -1.02
SHMT2-222ENST00000555774 DNAH1Q9P2D7 4330 aa8.7□□□□□ -1.02
SHMT2-222ENST00000555774 Q9BRP9 147 aa8.69□□□□□ -1.02
SHMT2-222ENST00000555774 FAM168BA1KXE4 195 aa8.69□□□□□ -1.02
SHMT2-222ENST00000555774 FUSP35637 526 aaKnown RBP eCLIP8.69□□□□□ -1.02
SHMT2-222ENST00000555774 TNP2Q05952 138 aa8.69□□□□□ -1.02
SHMT2-222ENST00000555774 FAM19A5Q7Z5A7 132 aaPredicted RBP8.69□□□□□ -1.02
SHMT2-222ENST00000555774 FAM236DA0A1B0GTK5 79 aa8.68□□□□□ -1.02
SHMT2-222ENST00000555774 RPL37AP8A6NKH3 93 aa8.68□□□□□ -1.02
SHMT2-222ENST00000555774 IGKV4-1P06312 121 aa8.68□□□□□ -1.02
SHMT2-222ENST00000555774 FAM236CP0DP71 79 aa8.68□□□□□ -1.02
SHMT2-222ENST00000555774 MRPL55Q7Z7F7 128 aaKnown RBP8.68□□□□□ -1.02
SHMT2-222ENST00000555774 ERC2-IT1O76042 136 aa8.68□□□□□ -1.02
SHMT2-222ENST00000555774 H7BZZ5 65 aa8.67□□□□□ -1.02
SHMT2-222ENST00000555774 BPY2O14599 106 aa8.67□□□□□ -1.02
SHMT2-222ENST00000555774 KRTAP7-1Q8IUC3 87 aa8.67□□□□□ -1.02
SHMT2-222ENST00000555774 NDUFC1O43677 76 aa8.66□□□□□ -1.02
SHMT2-222ENST00000555774 ANK2Q01484 3957 aa8.66□□□□□ -1.02
SHMT2-222ENST00000555774 C3orf84H3BNL1 204 aa8.65□□□□□ -1.02
SHMT2-222ENST00000555774 C1orf137Q5JT78 98 aa8.64□□□□□ -1.03
SHMT2-222ENST00000555774 Q8NBF4 154 aa8.64□□□□□ -1.03
SHMT2-222ENST00000555774 TENM3Q9P273 2699 aa8.63□□□□□ -1.03
SHMT2-222ENST00000555774 A0A1W2PNM2 257 aa8.63□□□□□ -1.03
SHMT2-222ENST00000555774 K7EIL1 84 aa8.63□□□□□ -1.03
SHMT2-222ENST00000555774 REG3GQ6UW15 175 aa8.63□□□□□ -1.03
SHMT2-222ENST00000555774 SPRR4Q96PI1 79 aa8.63□□□□□ -1.03
SHMT2-222ENST00000555774 OXTP01178 125 aa8.62□□□□□ -1.03
SHMT2-222ENST00000555774 ST20-AS1Q8NBB2 130 aa8.62□□□□□ -1.03
SHMT2-222ENST00000555774 UBE2BP63146 152 aa8.62□□□□□ -1.03
SHMT2-222ENST00000555774 Q8N9L7 120 aa8.62□□□□□ -1.03
SHMT2-222ENST00000555774 SNURFQ9Y675 71 aa8.61□□□□□ -1.03
SHMT2-222ENST00000555774 SERP1Q9Y6X1 66 aa8.61□□□□□ -1.03
SHMT2-222ENST00000555774 F8P00451 2351 aa8.61□□□□□ -1.03
SHMT2-222ENST00000555774 EPM2AB3EWF7 344 aa8.6□□□□□ -1.03
SHMT2-222ENST00000555774 ATP5EP56381 51 aaPredicted RBP8.6□□□□□ -1.03
SHMT2-222ENST00000555774 CNBPP62633 177 aaKnown RBP8.6□□□□□ -1.03
SHMT2-222ENST00000555774 PRB2P02812 416 aaPredicted RBP8.59□□□□□ -1.03
SHMT2-222ENST00000555774 OCR1Q9BZK8 76 aa8.59□□□□□ -1.03
SHMT2-222ENST00000555774 HUWE1Q7Z6Z7 4374 aaKnown RBP8.59□□□□□ -1.03
SHMT2-222ENST00000555774 C16orf90A8MZG2 172 aa8.59□□□□□ -1.03
SHMT2-222ENST00000555774 TMEM254Q8TBM7 123 aa8.59□□□□□ -1.03
SHMT2-222ENST00000555774 F8WEM9 126 aa8.58□□□□□ -1.04
SHMT2-222ENST00000555774 PKD1L1Q8TDX9 2849 aa8.57□□□□□ -1.04
SHMT2-222ENST00000555774 SMIM29Q86T20 159 aa8.57□□□□□ -1.04
SHMT2-222ENST00000555774 C14orf177Q52M58 125 aa8.55□□□□□ -1.04
SHMT2-222ENST00000555774 A0A096LNI7 61 aa8.54□□□□□ -1.04
SHMT2-222ENST00000555774 A0A0U1RQV1 116 aa8.54□□□□□ -1.04
SHMT2-222ENST00000555774 FBN1P35555 2871 aaKnown RBP8.53□□□□□ -1.04
SHMT2-222ENST00000555774 IGLV8-61A0A075B6I0 122 aa8.53□□□□□ -1.04
SHMT2-222ENST00000555774 LINC00476Q8WZB0 136 aa8.53□□□□□ -1.04
SHMT2-222ENST00000555774 PSCAO43653 123 aa8.53□□□□□ -1.04
SHMT2-222ENST00000555774 KRTAP1-5Q9BYS1 174 aa8.53□□□□□ -1.04
SHMT2-222ENST00000555774 MAST4O15021 2626 aa8.53□□□□□ -1.04
SHMT2-222ENST00000555774 C5orf47Q569G3 176 aa8.52□□□□□ -1.05
SHMT2-222ENST00000555774 Q5XG85 94 aa8.52□□□□□ -1.05
SHMT2-222ENST00000555774 PKIGQ9Y2B9 76 aa8.52□□□□□ -1.05
SHMT2-222ENST00000555774 DSCR10P59022 87 aa8.51□□□□□ -1.05
SHMT2-222ENST00000555774 STAB1Q9NY15 2570 aa8.51□□□□□ -1.05
SHMT2-222ENST00000555774 A0A1W2PNN7 141 aa8.51□□□□□ -1.05
SHMT2-222ENST00000555774 UBE2DNLQ8IWF7 75 aa8.5□□□□□ -1.05
SHMT2-222ENST00000555774 IGKV2-24A0A0C4DH68 120 aa8.49□□□□□ -1.05
SHMT2-222ENST00000555774 LCE6AA0A183 80 aa8.49□□□□□ -1.05
SHMT2-222ENST00000555774 IGFL1Q6UW32 110 aa8.49□□□□□ -1.05
SHMT2-222ENST00000555774 APLNQ9ULZ1 77 aa8.49□□□□□ -1.05
SHMT2-222ENST00000555774 H0Y9J4 135 aa8.49□□□□□ -1.05
SHMT2-222ENST00000555774 FLNBO75369 2602 aaKnown RBP8.48□□□□□ -1.05
SHMT2-222ENST00000555774 PRLHP81277 87 aa8.48□□□□□ -1.05
SHMT2-222ENST00000555774 BAHCC1Q9P281 2608 aa8.47□□□□□ -1.05
SHMT2-222ENST00000555774 SMIM26A0A096LP01 95 aa8.46□□□□□ -1.05
SHMT2-222ENST00000555774 K7EQZ3 153 aa8.46□□□□□ -1.05
SHMT2-222ENST00000555774 SPRR1BP22528 89 aa8.46□□□□□ -1.05
SHMT2-222ENST00000555774 HIGD2AQ9BW72 106 aa8.46□□□□□ -1.06
SHMT2-222ENST00000555774 FAM30AQ9NZY2 134 aa8.45□□□□□ -1.06
SHMT2-222ENST00000555774 UBE2AP49459 152 aa8.45□□□□□ -1.06
SHMT2-222ENST00000555774 C4orf26Q17RF5 130 aa8.45□□□□□ -1.06
SHMT2-222ENST00000555774 HCG22E2RYF7 251 aa8.44□□□□□ -1.06
SHMT2-222ENST00000555774 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.43□□□□□ -1.06
SHMT2-222ENST00000555774 C9orf163Q8N9P6 203 aa8.43□□□□□ -1.06
SHMT2-222ENST00000555774 DYNC2H1Q8NCM8 4307 aaKnown RBP8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms