RNA–Protein interactions for RNA: ENST00000554607.1

FOXA1-204, Transcript of forkhead box A1, humanhuman

TSL 3

Gene FOXA1, Length 789 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-204ENST00000554607 HSBP1O75506 76 aa13.16□□□□□ -0.3
FOXA1-204ENST00000554607 HINT1P49773 126 aaPredicted RBP13.16□□□□□ -0.3
FOXA1-204ENST00000554607 CBY1Q9Y3M2 126 aa13.16□□□□□ -0.3
FOXA1-204ENST00000554607 H0Y8G0 127 aa13.15□□□□□ -0.3
FOXA1-204ENST00000554607 J3QQQ9 107 aa13.15□□□□□ -0.3
FOXA1-204ENST00000554607 NMUP48645 174 aa13.15□□□□□ -0.3
FOXA1-204ENST00000554607 SLC25A34Q6PIV7 304 aa13.15□□□□□ -0.3
FOXA1-204ENST00000554607 C9orf92A6NGG3 77 aa13.13□□□□□ -0.31
FOXA1-204ENST00000554607 PLNP26678 52 aa13.13□□□□□ -0.31
FOXA1-204ENST00000554607 HERVK_113P61574 105 aa13.12□□□□□ -0.31
FOXA1-204ENST00000554607 LGALS3P17931 250 aaKnown RBP13.11□□□□□ -0.31
FOXA1-204ENST00000554607 SPRR1BP22528 89 aa13.11□□□□□ -0.31
FOXA1-204ENST00000554607 HRCT1Q6UXD1 115 aa13.11□□□□□ -0.31
FOXA1-204ENST00000554607 LORP23490 312 aaPredicted RBP13.1□□□□□ -0.31
FOXA1-204ENST00000554607 SNAPINO95295 136 aa13.09□□□□□ -0.31
FOXA1-204ENST00000554607 APOC3P02656 99 aa13.09□□□□□ -0.31
FOXA1-204ENST00000554607 KRTAP10-6P60371 365 aaPredicted RBP13.08□□□□□ -0.32
FOXA1-204ENST00000554607 LAMTOR3Q9UHA4 124 aa13.08□□□□□ -0.32
FOXA1-204ENST00000554607 LEPROTL1O95214 131 aa13.07□□□□□ -0.32
FOXA1-204ENST00000554607 SOSTDC1Q6X4U4 206 aa13.06□□□□□ -0.32
FOXA1-204ENST00000554607 SVBPQ8N300 66 aa13.06□□□□□ -0.32
FOXA1-204ENST00000554607 DHRS4-AS1Q9P1J3 65 aa13.06□□□□□ -0.32
FOXA1-204ENST00000554607 DPM2O94777 84 aa13.05□□□□□ -0.32
FOXA1-204ENST00000554607 NPC2P61916 151 aa13.05□□□□□ -0.32
FOXA1-204ENST00000554607 NDUFA5Q16718 116 aa13.05□□□□□ -0.32
FOXA1-204ENST00000554607 M0R2T5 61 aa13.03□□□□□ -0.32
FOXA1-204ENST00000554607 CD164Q04900 197 aa13.03□□□□□ -0.32
FOXA1-204ENST00000554607 EIF4EBP3O60516 100 aaPredicted RBP13.02□□□□□ -0.33
FOXA1-204ENST00000554607 ADAMTSL4-AS1Q5T5F5 129 aa13.02□□□□□ -0.33
FOXA1-204ENST00000554607 YPEL4Q96NS1 127 aa13.02□□□□□ -0.33
FOXA1-204ENST00000554607 A0A0J9YXY3 114 aa13.01□□□□□ -0.33
FOXA1-204ENST00000554607 IGKCP01834 107 aa13.01□□□□□ -0.33
FOXA1-204ENST00000554607 HSPB8Q9UJY1 196 aa13□□□□□ -0.33
FOXA1-204ENST00000554607 OR13C6PQ8NH95 151 aa12.99□□□□□ -0.33
FOXA1-204ENST00000554607 PMCHL2Q9BQD1 86 aa12.98□□□□□ -0.33
FOXA1-204ENST00000554607 PRO1933Q9H354 126 aa12.98□□□□□ -0.33
FOXA1-204ENST00000554607 SPANXCQ9NY87 97 aa12.97□□□□□ -0.33
FOXA1-204ENST00000554607 TAL2Q16559 108 aa12.96□□□□□ -0.33
FOXA1-204ENST00000554607 COX6B2Q6YFQ2 88 aa12.96□□□□□ -0.33
FOXA1-204ENST00000554607 H7C2G1 150 aa12.95□□□□□ -0.34
FOXA1-204ENST00000554607 Q5XG85 94 aa12.95□□□□□ -0.34
FOXA1-204ENST00000554607 SERF1AO75920 110 aa12.94□□□□□ -0.34
FOXA1-204ENST00000554607 FABP4P15090 132 aa12.94□□□□□ -0.34
FOXA1-204ENST00000554607 E9PLD3 99 aa12.92□□□□□ -0.34
FOXA1-204ENST00000554607 COX7BP24311 80 aa12.92□□□□□ -0.34
FOXA1-204ENST00000554607 RPL37P61927 97 aaKnown RBP12.92□□□□□ -0.34
FOXA1-204ENST00000554607 Q1RN00 199 aa12.92□□□□□ -0.34
FOXA1-204ENST00000554607 LINC00308Q8TCZ7 52 aa12.92□□□□□ -0.34
FOXA1-204ENST00000554607 SPANXDQ9BXN6 97 aa12.92□□□□□ -0.34
FOXA1-204ENST00000554607 LINC00310P59036 64 aa12.91□□□□□ -0.34
FOXA1-204ENST00000554607 ELOF1P60002 83 aaKnown RBP12.91□□□□□ -0.34
FOXA1-204ENST00000554607 DEFB105AQ8NG35 78 aa12.91□□□□□ -0.34
FOXA1-204ENST00000554607 TEX49A0A1B0GTD5 131 aa12.9□□□□□ -0.34
FOXA1-204ENST00000554607 AKR1D1P51857 326 aa12.9□□□□□ -0.34
FOXA1-204ENST00000554607 TRGC2P03986 189 aa12.89□□□□□ -0.35
FOXA1-204ENST00000554607 C1orf195Q5TG92 126 aa12.89□□□□□ -0.35
FOXA1-204ENST00000554607 FLGP20930 4061 aaPredicted RBP12.89□□□□□ -0.35
FOXA1-204ENST00000554607 TIMM17BO60830 172 aa12.87□□□□□ -0.35
FOXA1-204ENST00000554607 C6orf99Q4VX62 202 aa12.87□□□□□ -0.35
FOXA1-204ENST00000554607 LITAFQ99732 161 aa12.87□□□□□ -0.35
FOXA1-204ENST00000554607 LINC00518Q8N0U6 118 aa12.86□□□□□ -0.35
FOXA1-204ENST00000554607 TRBV7-6A0A0J9YX20 115 aa12.81□□□□□ -0.36
FOXA1-204ENST00000554607 SMIM29Q86T20 159 aa12.81□□□□□ -0.36
FOXA1-204ENST00000554607 TCL1BO95988 128 aa12.77□□□□□ -0.37
FOXA1-204ENST00000554607 IGLV5-48A0A075B6I7 105 aa12.76□□□□□ -0.37
FOXA1-204ENST00000554607 A0A1B0GWB2 263 aa12.76□□□□□ -0.37
FOXA1-204ENST00000554607 ZNF815PA8K554 130 aa12.75□□□□□ -0.37
FOXA1-204ENST00000554607 A0A0G2JQZ4 141 aa12.74□□□□□ -0.37
FOXA1-204ENST00000554607 SYS1-DBNDD2H3BUS1 97 aa12.71□□□□□ -0.37
FOXA1-204ENST00000554607 A4D1N5 150 aa12.68□□□□□ -0.38
FOXA1-204ENST00000554607 COPS9Q8WXC6 57 aa12.68□□□□□ -0.38
FOXA1-204ENST00000554607 Q6Q795 121 aa12.66□□□□□ -0.38
FOXA1-204ENST00000554607 NHP2Q9NX24 153 aaKnown RBP12.66□□□□□ -0.38
FOXA1-204ENST00000554607 A6NDN8 102 aa12.65□□□□□ -0.38
FOXA1-204ENST00000554607 LINC01545Q5VT33 79 aa12.65□□□□□ -0.38
FOXA1-204ENST00000554607 TTTY13Q9BZ97 58 aa12.65□□□□□ -0.38
FOXA1-204ENST00000554607 ATP11AUNQ6ZP68 121 aa12.63□□□□□ -0.39
FOXA1-204ENST00000554607 PET117Q6UWS5 81 aa12.62□□□□□ -0.39
FOXA1-204ENST00000554607 F8WEM9 126 aa12.61□□□□□ -0.39
FOXA1-204ENST00000554607 IFITM1P13164 125 aa12.61□□□□□ -0.39
FOXA1-204ENST00000554607 SCGB1D4Q6XE38 83 aa12.61□□□□□ -0.39
FOXA1-204ENST00000554607 KRTAP9-7A8MTY7 169 aa12.6□□□□□ -0.39
FOXA1-204ENST00000554607 PCP2Q8IVA1 136 aa12.6□□□□□ -0.39
FOXA1-204ENST00000554607 KRTAP9-1A8MXZ3 250 aaPredicted RBP12.59□□□□□ -0.39
FOXA1-204ENST00000554607 COLCA2A8K830 154 aa12.58□□□□□ -0.4
FOXA1-204ENST00000554607 Q75L30 129 aa12.58□□□□□ -0.4
FOXA1-204ENST00000554607 CFC1P0CG37 223 aa12.57□□□□□ -0.4
FOXA1-204ENST00000554607 Q6ZVH6 145 aa12.57□□□□□ -0.4
FOXA1-204ENST00000554607 Q6JHZ5 121 aa12.54□□□□□ -0.4
FOXA1-204ENST00000554607 OBSCN-AS1Q96MR7 158 aa12.54□□□□□ -0.4
FOXA1-204ENST00000554607 TRAV13-2A0A0B4J235 113 aa12.53□□□□□ -0.4
FOXA1-204ENST00000554607 MUSTN1Q8IVN3 82 aa12.52□□□□□ -0.41
FOXA1-204ENST00000554607 SMIM11BQ8TCY0 68 aa12.52□□□□□ -0.41
FOXA1-204ENST00000554607 TRBV7-7A0A0K0K1E9 115 aa12.51□□□□□ -0.41
FOXA1-204ENST00000554607 USH2AO75445 5202 aa12.51□□□□□ -0.41
FOXA1-204ENST00000554607 VAMP3Q15836 100 aa12.5□□□□□ -0.41
FOXA1-204ENST00000554607 CLEC2BQ92478 149 aa12.5□□□□□ -0.41
FOXA1-204ENST00000554607 SSPOA2VEC9 5147 aa12.5□□□□□ -0.41
FOXA1-204ENST00000554607 C20orf202A1L168 122 aa12.48□□□□□ -0.41
FOXA1-204ENST00000554607 C3orf79P0CE67 100 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms