RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 DEFB131BA0A096LNP1 70 aa5.19□□□□□ -1.58
LIMA1-216ENST00000552909 EPPK1P58107 5090 aaKnown RBP5.19□□□□□ -1.58
LIMA1-216ENST00000552909 IGKV3OR2-268A0A0C4DH90 116 aa5.19□□□□□ -1.58
LIMA1-216ENST00000552909 CXCL6P80162 114 aa5.19□□□□□ -1.58
LIMA1-216ENST00000552909 Q6ZVQ6 151 aa5.19□□□□□ -1.58
LIMA1-216ENST00000552909 DNAH2Q9P225 4427 aa5.19□□□□□ -1.58
LIMA1-216ENST00000552909 IGHV3OR16-9A0A0B4J2B5 98 aa5.18□□□□□ -1.58
LIMA1-216ENST00000552909 TRGV4A0A0C4DH28 118 aa5.18□□□□□ -1.58
LIMA1-216ENST00000552909 TRBV7-4A0A0J9YYF1 115 aa5.18□□□□□ -1.58
LIMA1-216ENST00000552909 LY6G6CO95867 125 aa5.18□□□□□ -1.58
LIMA1-216ENST00000552909 HTN3P15516 51 aa5.18□□□□□ -1.58
LIMA1-216ENST00000552909 LINC00476Q8WZB0 136 aa5.18□□□□□ -1.58
LIMA1-216ENST00000552909 APLNQ9ULZ1 77 aa5.18□□□□□ -1.58
LIMA1-216ENST00000552909 A0A087WZ39 114 aa5.18□□□□□ -1.58
LIMA1-216ENST00000552909 LYRM9A8MSI8 78 aa5.18□□□□□ -1.58
LIMA1-216ENST00000552909 ZNF561-AS1K7EIQ3 104 aa5.18□□□□□ -1.58
LIMA1-216ENST00000552909 DAD1P61803 113 aa5.18□□□□□ -1.58
LIMA1-216ENST00000552909 Q8N3U1 123 aa5.18□□□□□ -1.58
LIMA1-216ENST00000552909 C6orf226Q5I0X4 101 aa5.17□□□□□ -1.58
LIMA1-216ENST00000552909 LINC00612Q8N6U2 182 aa5.17□□□□□ -1.58
LIMA1-216ENST00000552909 MPLKIPQ8TAP9 179 aa5.17□□□□□ -1.58
LIMA1-216ENST00000552909 LAMTOR3Q9UHA4 124 aa5.17□□□□□ -1.58
LIMA1-216ENST00000552909 DNAH10Q8IVF4 4471 aa5.16□□□□□ -1.58
LIMA1-216ENST00000552909 PDE6GP18545 87 aa5.16□□□□□ -1.58
LIMA1-216ENST00000552909 NREPQ16612 68 aa5.16□□□□□ -1.58
LIMA1-216ENST00000552909 C6orf223Q8N319 242 aa5.16□□□□□ -1.58
LIMA1-216ENST00000552909 TMEM254Q8TBM7 123 aa5.16□□□□□ -1.58
LIMA1-216ENST00000552909 DNAH6Q9C0G6 4158 aa5.16□□□□□ -1.58
LIMA1-216ENST00000552909 LOC100131303A0A0U1RQF7 123 aa5.15□□□□□ -1.58
LIMA1-216ENST00000552909 M0R2N4 97 aa5.15□□□□□ -1.58
LIMA1-216ENST00000552909 PRR3P79522 188 aaKnown RBP5.15□□□□□ -1.58
LIMA1-216ENST00000552909 FAM229BQ4G0N7 80 aa5.15□□□□□ -1.58
LIMA1-216ENST00000552909 ERC2-IT1O76042 136 aa5.15□□□□□ -1.59
LIMA1-216ENST00000552909 C6orf99Q4VX62 202 aa5.15□□□□□ -1.59
LIMA1-216ENST00000552909 LINC00575Q6W349 94 aa5.15□□□□□ -1.59
LIMA1-216ENST00000552909 IGLV4-60A0A075B6I1 120 aa5.14□□□□□ -1.59
LIMA1-216ENST00000552909 ESRGQ1W209 222 aa5.14□□□□□ -1.59
LIMA1-216ENST00000552909 PRO0255Q9UI72 69 aa5.14□□□□□ -1.59
LIMA1-216ENST00000552909 BPY2O14599 106 aa5.13□□□□□ -1.59
LIMA1-216ENST00000552909 Q8IZM0 81 aa5.13□□□□□ -1.59
LIMA1-216ENST00000552909 PRYO14603 147 aa5.12□□□□□ -1.59
LIMA1-216ENST00000552909 GYPEP15421 78 aa5.12□□□□□ -1.59
LIMA1-216ENST00000552909 FUSP35637 526 aaKnown RBP eCLIP5.12□□□□□ -1.59
LIMA1-216ENST00000552909 SCXQ7RTU7 201 aa5.12□□□□□ -1.59
LIMA1-216ENST00000552909 FAT2Q9NYQ8 4349 aa5.12□□□□□ -1.59
LIMA1-216ENST00000552909 LINC00959A0A1B0GUT2 108 aa5.12□□□□□ -1.59
LIMA1-216ENST00000552909 H3BQ85 93 aa5.12□□□□□ -1.59
LIMA1-216ENST00000552909 TRBV6-8A0A0A6YYG3 113 aa5.11□□□□□ -1.59
LIMA1-216ENST00000552909 A0A096LPF7 62 aa5.11□□□□□ -1.59
LIMA1-216ENST00000552909 PMAIP1Q13794 54 aa5.11□□□□□ -1.59
LIMA1-216ENST00000552909 COX17Q14061 63 aa5.11□□□□□ -1.59
LIMA1-216ENST00000552909 PRR15Q8IV56 129 aa5.11□□□□□ -1.59
LIMA1-216ENST00000552909 Q6ZQY7 126 aa5.09□□□□□ -1.59
LIMA1-216ENST00000552909 DNAH17Q9UFH2 4485 aa5.09□□□□□ -1.59
LIMA1-216ENST00000552909 HECTD4Q9Y4D8 3996 aa5.09□□□□□ -1.6
LIMA1-216ENST00000552909 PKHD1P08F94 4074 aa5.08□□□□□ -1.6
LIMA1-216ENST00000552909 Q6ZRU5 148 aa5.08□□□□□ -1.6
LIMA1-216ENST00000552909 UBE2DNLQ8IWF7 75 aa5.08□□□□□ -1.6
LIMA1-216ENST00000552909 OCR1Q9BZK8 76 aa5.08□□□□□ -1.6
LIMA1-216ENST00000552909 LINC00588Q9Y4M8 146 aa5.08□□□□□ -1.6
LIMA1-216ENST00000552909 PKD1P98161 4303 aa5.07□□□□□ -1.6
LIMA1-216ENST00000552909 Q8NDZ9 215 aa5.06□□□□□ -1.6
LIMA1-216ENST00000552909 H3BNG1 76 aa5.06□□□□□ -1.6
LIMA1-216ENST00000552909 CD164L2Q6UWJ8 174 aa5.06□□□□□ -1.6
LIMA1-216ENST00000552909 HIGD2AQ9BW72 106 aa5.06□□□□□ -1.6
LIMA1-216ENST00000552909 hDV103S1A0JD37 113 aa5.05□□□□□ -1.6
LIMA1-216ENST00000552909 IGKV4-1P06312 121 aa5.05□□□□□ -1.6
LIMA1-216ENST00000552909 KIAA0087Q14695 138 aa5.05□□□□□ -1.6
LIMA1-216ENST00000552909 Q1T7F1 81 aa5.05□□□□□ -1.6
LIMA1-216ENST00000552909 C9orf116Q5BN46 136 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-216ENST00000552909 Q8N9L7 120 aa5.05□□□□□ -1.6
LIMA1-216ENST00000552909 BIRC6Q9NR09 4857 aa5.05□□□□□ -1.6
LIMA1-216ENST00000552909 IGLV6-57P01721 117 aa5.05□□□□□ -1.6
LIMA1-216ENST00000552909 CLPSL2Q6UWE3 100 aa5.05□□□□□ -1.6
LIMA1-216ENST00000552909 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-216ENST00000552909 DNAH11Q96DT5 4516 aa5.05□□□□□ -1.6
LIMA1-216ENST00000552909 COX7BP24311 80 aa5.04□□□□□ -1.6
LIMA1-216ENST00000552909 Q6ZR54 194 aa5.04□□□□□ -1.6
LIMA1-216ENST00000552909 LINC00269Q8N2A0 174 aa5.04□□□□□ -1.6
LIMA1-216ENST00000552909 A0A1B0GUV1 79 aa5.04□□□□□ -1.6
LIMA1-216ENST00000552909 Q6ZRP5 223 aa5.03□□□□□ -1.6
LIMA1-216ENST00000552909 DIRC1Q969H9 104 aa5.03□□□□□ -1.6
LIMA1-216ENST00000552909 KRTAP1-5Q9BYS1 174 aa5.03□□□□□ -1.6
LIMA1-216ENST00000552909 RTL8CO15255 209 aa5.02□□□□□ -1.61
LIMA1-216ENST00000552909 LELP1Q5T871 98 aa5.02□□□□□ -1.61
LIMA1-216ENST00000552909 LRCOL1A6NCL2 159 aa5.02□□□□□ -1.61
LIMA1-216ENST00000552909 NBDYA0A0U1RRE5 68 aa5.01□□□□□ -1.61
LIMA1-216ENST00000552909 CD164Q04900 197 aa5.01□□□□□ -1.61
LIMA1-216ENST00000552909 C1orf64Q8NEQ6 169 aa5.01□□□□□ -1.61
LIMA1-216ENST00000552909 CHCHD10Q8WYQ3 142 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-216ENST00000552909 XP32Q5T750 250 aa5.01□□□□□ -1.61
LIMA1-216ENST00000552909 PSPHP1O15172 72 aa5□□□□□ -1.61
LIMA1-216ENST00000552909 ZNF73O43830 326 aaPredicted RBP5□□□□□ -1.61
LIMA1-216ENST00000552909 FAM30AQ9NZY2 134 aa5□□□□□ -1.61
LIMA1-216ENST00000552909 IGLV10-54A0A075B6I4 117 aa4.99□□□□□ -1.61
LIMA1-216ENST00000552909 ANGP03950 147 aaKnown RBP4.99□□□□□ -1.61
LIMA1-216ENST00000552909 ELOF1P60002 83 aaKnown RBP4.99□□□□□ -1.61
LIMA1-216ENST00000552909 HIGD2BQ4VC39 106 aa4.99□□□□□ -1.61
LIMA1-216ENST00000552909 WFDC10BQ8IUB3 73 aa4.99□□□□□ -1.61
LIMA1-216ENST00000552909 KIAA1109Q2LD37 5005 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 213.3 ms