RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 HIGD2AQ9BW72 106 aa3.66□□□□□ -1.82
LIMA1-215ENST00000552823 KRTAP1-5Q9BYS1 174 aa3.66□□□□□ -1.82
LIMA1-215ENST00000552823 M0R378 163 aa3.66□□□□□ -1.82
LIMA1-215ENST00000552823 LINC01561Q8N1V8 128 aa3.66□□□□□ -1.82
LIMA1-215ENST00000552823 ETDCA0A1B0GVM5 59 aa3.65□□□□□ -1.82
LIMA1-215ENST00000552823 DNAH10OSP0CZ25 163 aa3.65□□□□□ -1.82
LIMA1-215ENST00000552823 IGLV6-57P01721 117 aa3.65□□□□□ -1.83
LIMA1-215ENST00000552823 PRLHP81277 87 aa3.65□□□□□ -1.83
LIMA1-215ENST00000552823 HUWE1Q7Z6Z7 4374 aaKnown RBP3.65□□□□□ -1.83
LIMA1-215ENST00000552823 CCKP06307 115 aa3.64□□□□□ -1.83
LIMA1-215ENST00000552823 ACYP1P07311 99 aa3.64□□□□□ -1.83
LIMA1-215ENST00000552823 C9orf153Q5TBE3 101 aa3.64□□□□□ -1.83
LIMA1-215ENST00000552823 LINC00167Q96N53 147 aa3.64□□□□□ -1.83
LIMA1-215ENST00000552823 UBL5Q9BZL1 73 aa3.64□□□□□ -1.83
LIMA1-215ENST00000552823 DNAH10Q8IVF4 4471 aa3.64□□□□□ -1.83
LIMA1-215ENST00000552823 DEFB116Q30KQ4 102 aa3.64□□□□□ -1.83
LIMA1-215ENST00000552823 JMJD7-PLA2G4BH0Y9G9 81 aa3.64□□□□□ -1.83
LIMA1-215ENST00000552823 TM2D3Q9BRN9 247 aa3.64□□□□□ -1.83
LIMA1-215ENST00000552823 FAM240AA0A1B0GVK7 77 aa3.63□□□□□ -1.83
LIMA1-215ENST00000552823 ERC2-IT1O76042 136 aa3.63□□□□□ -1.83
LIMA1-215ENST00000552823 H3BNG1 76 aa3.62□□□□□ -1.83
LIMA1-215ENST00000552823 LYSTQ99698 3801 aa3.62□□□□□ -1.83
LIMA1-215ENST00000552823 C2orf48Q96LS8 159 aa3.62□□□□□ -1.83
LIMA1-215ENST00000552823 PHF5AQ7RTV0 110 aaKnown RBP3.62□□□□□ -1.83
LIMA1-215ENST00000552823 UPK3BQ9BT76 320 aa3.62□□□□□ -1.83
LIMA1-215ENST00000552823 GVQW2A0A096LPI5 108 aaPredicted RBP3.61□□□□□ -1.83
LIMA1-215ENST00000552823 GHRHP01286 108 aa3.61□□□□□ -1.83
LIMA1-215ENST00000552823 MUC7Q8TAX7 377 aa3.61□□□□□ -1.83
LIMA1-215ENST00000552823 RMI2Q96E14 147 aa3.61□□□□□ -1.83
LIMA1-215ENST00000552823 CMYA5Q8N3K9 4069 aa3.61□□□□□ -1.83
LIMA1-215ENST00000552823 ELOF1P60002 83 aaKnown RBP3.61□□□□□ -1.83
LIMA1-215ENST00000552823 Q6ZQT0 140 aa3.61□□□□□ -1.83
LIMA1-215ENST00000552823 Q6ZVQ6 151 aa3.61□□□□□ -1.83
LIMA1-215ENST00000552823 TRBV7-7A0A0K0K1E9 115 aa3.6□□□□□ -1.83
LIMA1-215ENST00000552823 BPY2O14599 106 aa3.6□□□□□ -1.83
LIMA1-215ENST00000552823 MRPL55Q7Z7F7 128 aaKnown RBP3.6□□□□□ -1.83
LIMA1-215ENST00000552823 LINC01600Q96MT4 127 aa3.6□□□□□ -1.83
LIMA1-215ENST00000552823 TNP2Q05952 138 aa3.59□□□□□ -1.83
LIMA1-215ENST00000552823 NREPQ16612 68 aa3.59□□□□□ -1.83
LIMA1-215ENST00000552823 KRTAP7-1Q8IUC3 87 aa3.59□□□□□ -1.83
LIMA1-215ENST00000552823 C20orf197Q8N268 126 aa3.59□□□□□ -1.83
LIMA1-215ENST00000552823 SNURFQ9Y675 71 aa3.59□□□□□ -1.83
LIMA1-215ENST00000552823 Q6Q795 121 aa3.59□□□□□ -1.83
LIMA1-215ENST00000552823 Q8N377 158 aa3.59□□□□□ -1.83
LIMA1-215ENST00000552823 CYSTM1Q9H1C7 97 aa3.59□□□□□ -1.83
LIMA1-215ENST00000552823 LOC107984640A0A0U1RRK4 108 aa3.59□□□□□ -1.84
LIMA1-215ENST00000552823 LINC01547P58512 204 aaPredicted RBP3.59□□□□□ -1.84
LIMA1-215ENST00000552823 Q6JHZ5 121 aa3.59□□□□□ -1.84
LIMA1-215ENST00000552823 HRCT1Q6UXD1 115 aa3.59□□□□□ -1.84
LIMA1-215ENST00000552823 Q9BRP9 147 aa3.59□□□□□ -1.84
LIMA1-215ENST00000552823 LY6G6CO95867 125 aa3.58□□□□□ -1.84
LIMA1-215ENST00000552823 OBSCN-AS1Q96MR7 158 aa3.58□□□□□ -1.84
LIMA1-215ENST00000552823 FBN3Q75N90 2809 aa3.58□□□□□ -1.84
LIMA1-215ENST00000552823 PANO1I0J062 215 aa3.57□□□□□ -1.84
LIMA1-215ENST00000552823 DNHD1Q96M86 4753 aa3.57□□□□□ -1.84
LIMA1-215ENST00000552823 APLNQ9ULZ1 77 aa3.57□□□□□ -1.84
LIMA1-215ENST00000552823 V9GYY9 64 aa3.57□□□□□ -1.84
LIMA1-215ENST00000552823 PLECQ15149 4684 aaKnown RBP3.57□□□□□ -1.84
LIMA1-215ENST00000552823 DNAH9Q9NYC9 4486 aa3.57□□□□□ -1.84
LIMA1-215ENST00000552823 IGLV1-50A0A075B6I6 118 aa3.57□□□□□ -1.84
LIMA1-215ENST00000552823 REG3GQ6UW15 175 aa3.57□□□□□ -1.84
LIMA1-215ENST00000552823 KRTAP11-1Q8IUC1 163 aa3.57□□□□□ -1.84
LIMA1-215ENST00000552823 UBE2AP49459 152 aa3.57□□□□□ -1.84
LIMA1-215ENST00000552823 C1orf137Q5JT78 98 aa3.57□□□□□ -1.84
LIMA1-215ENST00000552823 ANAPC11Q9NYG5 84 aa3.57□□□□□ -1.84
LIMA1-215ENST00000552823 ATOX1O00244 68 aa3.56□□□□□ -1.84
LIMA1-215ENST00000552823 F8WEM9 126 aa3.56□□□□□ -1.84
LIMA1-215ENST00000552823 Q6ZRX8 168 aa3.56□□□□□ -1.84
LIMA1-215ENST00000552823 IMUPQ9GZP8 106 aa3.56□□□□□ -1.84
LIMA1-215ENST00000552823 KCNQ1DNQ9H478 68 aa3.56□□□□□ -1.84
LIMA1-215ENST00000552823 COX7CP15954 63 aa3.55□□□□□ -1.84
LIMA1-215ENST00000552823 NBDYA0A0U1RRE5 68 aa3.55□□□□□ -1.84
LIMA1-215ENST00000552823 B9D2Q9BPU9 175 aa3.55□□□□□ -1.84
LIMA1-215ENST00000552823 MEGF8Q7Z7M0 2845 aa3.55□□□□□ -1.84
LIMA1-215ENST00000552823 IGLV9-49A0A0B4J1Y8 123 aa3.55□□□□□ -1.84
LIMA1-215ENST00000552823 UQCRQO14949 82 aa3.55□□□□□ -1.84
LIMA1-215ENST00000552823 RPL37AP61513 92 aaKnown RBP3.54□□□□□ -1.84
LIMA1-215ENST00000552823 A0A087WSZ3 146 aa3.54□□□□□ -1.84
LIMA1-215ENST00000552823 A0A1W2PNM2 257 aa3.54□□□□□ -1.84
LIMA1-215ENST00000552823 WFDC13Q8IUB5 93 aa3.54□□□□□ -1.84
LIMA1-215ENST00000552823 FAM30AQ9NZY2 134 aa3.54□□□□□ -1.84
LIMA1-215ENST00000552823 TRBV7-4A0A0J9YYF1 115 aa3.53□□□□□ -1.84
LIMA1-215ENST00000552823 SERP2Q8N6R1 65 aa3.53□□□□□ -1.84
LIMA1-215ENST00000552823 PRKDCP78527 4128 aaKnown RBP3.53□□□□□ -1.84
LIMA1-215ENST00000552823 LRCOL1A6NCL2 159 aa3.53□□□□□ -1.84
LIMA1-215ENST00000552823 EPM2AB3EWF7 344 aa3.53□□□□□ -1.84
LIMA1-215ENST00000552823 DHRS4-AS1Q9P1J3 65 aa3.53□□□□□ -1.84
LIMA1-215ENST00000552823 LOC110117498A0A087WWA1 95 aa3.53□□□□□ -1.84
LIMA1-215ENST00000552823 PRR4Q16378 134 aa3.53□□□□□ -1.84
LIMA1-215ENST00000552823 LINC00476Q8WZB0 136 aa3.53□□□□□ -1.84
LIMA1-215ENST00000552823 PKIGQ9Y2B9 76 aa3.53□□□□□ -1.84
LIMA1-215ENST00000552823 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.53□□□□□ -1.84
LIMA1-215ENST00000552823 C16orf90A8MZG2 172 aa3.52□□□□□ -1.85
LIMA1-215ENST00000552823 PRYO14603 147 aa3.52□□□□□ -1.85
LIMA1-215ENST00000552823 H3BS24 57 aa3.52□□□□□ -1.85
LIMA1-215ENST00000552823 DNAH7Q8WXX0 4024 aa3.52□□□□□ -1.85
LIMA1-215ENST00000552823 TLX1NBP0CAT3 122 aa3.51□□□□□ -1.85
LIMA1-215ENST00000552823 PDE6GP18545 87 aa3.51□□□□□ -1.85
LIMA1-215ENST00000552823 NUPR2A6NF83 97 aa3.51□□□□□ -1.85
LIMA1-215ENST00000552823 TRBV7-6A0A0J9YX20 115 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms