RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 ELOF1P60002 83 aaKnown RBP1.47□□□□□ -2.17
LIMA1-210ENST00000552045 RPL37P61927 97 aaKnown RBP1.47□□□□□ -2.17
LIMA1-210ENST00000552045 UBE2G1P62253 170 aa1.47□□□□□ -2.17
LIMA1-210ENST00000552045 RPL7L1Q6DKI1 246 aaKnown RBP1.47□□□□□ -2.17
LIMA1-210ENST00000552045 APLNQ9ULZ1 77 aa1.47□□□□□ -2.17
LIMA1-210ENST00000552045 A6NIN4 97 aa1.46□□□□□ -2.18
LIMA1-210ENST00000552045 HIST1H1DP16402 221 aaKnown RBP1.46□□□□□ -2.18
LIMA1-210ENST00000552045 HAMPP81172 84 aa1.46□□□□□ -2.18
LIMA1-210ENST00000552045 RPRMQ9NS64 109 aa1.46□□□□□ -2.18
LIMA1-210ENST00000552045 USH2AO75445 5202 aa1.45□□□□□ -2.18
LIMA1-210ENST00000552045 CCL3L1P16619 93 aa1.45□□□□□ -2.18
LIMA1-210ENST00000552045 COPS9Q8WXC6 57 aa1.45□□□□□ -2.18
LIMA1-210ENST00000552045 SNRNP25Q9BV90 132 aaKnown RBP1.45□□□□□ -2.18
LIMA1-210ENST00000552045 SEC11CQ9BY50 192 aa1.45□□□□□ -2.18
LIMA1-210ENST00000552045 DPH3P1Q9H4G8 78 aa1.45□□□□□ -2.18
LIMA1-210ENST00000552045 FCGBPQ9Y6R7 5405 aaPredicted RBP1.44□□□□□ -2.18
LIMA1-210ENST00000552045 A0A0D9SG42 100 aa1.44□□□□□ -2.18
LIMA1-210ENST00000552045 DEFB136Q30KP8 78 aa1.44□□□□□ -2.18
LIMA1-210ENST00000552045 MEIG1Q5JSS6 88 aa1.44□□□□□ -2.18
LIMA1-210ENST00000552045 C10orf82Q8WW14 230 aa1.44□□□□□ -2.18
LIMA1-210ENST00000552045 DSCR8Q96T75 97 aa1.44□□□□□ -2.18
LIMA1-210ENST00000552045 LOC100130705A0A1B0GUX0 176 aa1.43□□□□□ -2.18
LIMA1-210ENST00000552045 MRPL33O75394 65 aaKnown RBP1.43□□□□□ -2.18
LIMA1-210ENST00000552045 CBLN1P23435 193 aa1.43□□□□□ -2.18
LIMA1-210ENST00000552045 VMO1Q7Z5L0 202 aa1.43□□□□□ -2.18
LIMA1-210ENST00000552045 C20orf197Q8N268 126 aa1.43□□□□□ -2.18
LIMA1-210ENST00000552045 AGPAT4-IT1Q9H0P7 198 aa1.43□□□□□ -2.18
LIMA1-210ENST00000552045 KMT2DO14686 5537 aa1.42□□□□□ -2.18
LIMA1-210ENST00000552045 IFNGP01579 166 aa1.42□□□□□ -2.18
LIMA1-210ENST00000552045 MT1HL1P0DM35 61 aa1.42□□□□□ -2.18
LIMA1-210ENST00000552045 S100PP25815 95 aa1.42□□□□□ -2.18
LIMA1-210ENST00000552045 SSBP1Q04837 148 aaKnown RBP1.42□□□□□ -2.18
LIMA1-210ENST00000552045 S100A7L2Q5SY68 101 aa1.42□□□□□ -2.18
LIMA1-210ENST00000552045 C12orf57Q99622 126 aa1.42□□□□□ -2.18
LIMA1-210ENST00000552045 RERGLQ9H628 205 aa1.42□□□□□ -2.18
LIMA1-210ENST00000552045 RBAKDNA6NC62 111 aa1.41□□□□□ -2.18
LIMA1-210ENST00000552045 KRTAP2-3P0C7H8 128 aa1.41□□□□□ -2.18
LIMA1-210ENST00000552045 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.41□□□□□ -2.18
LIMA1-210ENST00000552045 KRTAP2-4Q9BYR9 128 aa1.41□□□□□ -2.18
LIMA1-210ENST00000552045 LINC00846Q9NV44 126 aa1.41□□□□□ -2.18
LIMA1-210ENST00000552045 LPAP08519 4548 aa1.4□□□□□ -2.18
LIMA1-210ENST00000552045 WHAMMP3Q1A5X7 153 aa1.4□□□□□ -2.19
LIMA1-210ENST00000552045 COX7B2Q8TF08 81 aa1.4□□□□□ -2.19
LIMA1-210ENST00000552045 TMEM203Q969S6 136 aa1.4□□□□□ -2.19
LIMA1-210ENST00000552045 C14orf144Q96I85 54 aa1.4□□□□□ -2.19
LIMA1-210ENST00000552045 A0A087WTM6 91 aa1.39□□□□□ -2.19
LIMA1-210ENST00000552045 C4orf33Q8N1A6 199 aa1.39□□□□□ -2.19
LIMA1-210ENST00000552045 SPTSSBQ8NFR3 76 aa1.39□□□□□ -2.19
LIMA1-210ENST00000552045 GNG8Q9UK08 70 aa1.39□□□□□ -2.19
LIMA1-210ENST00000552045 MUC12Q9UKN1 5478 aa1.38□□□□□ -2.19
LIMA1-210ENST00000552045 PVALEFA0A1B0GWK0 134 aa1.38□□□□□ -2.19
LIMA1-210ENST00000552045 F6UZH7 168 aa1.38□□□□□ -2.19
LIMA1-210ENST00000552045 FGF7P21781 194 aa1.38□□□□□ -2.19
LIMA1-210ENST00000552045 UBE2D1P51668 147 aa1.38□□□□□ -2.19
LIMA1-210ENST00000552045 DEFB135Q30KP9 77 aa1.38□□□□□ -2.19
LIMA1-210ENST00000552045 FAM74A4Q5TZK3 123 aa1.38□□□□□ -2.19
LIMA1-210ENST00000552045 LSM10Q969L4 123 aaKnown RBP1.38□□□□□ -2.19
LIMA1-210ENST00000552045 SCN3BQ9NY72 215 aa1.38□□□□□ -2.19
LIMA1-210ENST00000552045 SERP1Q9Y6X1 66 aa1.38□□□□□ -2.19
LIMA1-210ENST00000552045 DEFB131BA0A096LNP1 70 aa1.37□□□□□ -2.19
LIMA1-210ENST00000552045 LOC285095A0A1B0GVY8 99 aa1.37□□□□□ -2.19
LIMA1-210ENST00000552045 CORTO00230 105 aa1.37□□□□□ -2.19
LIMA1-210ENST00000552045 CCL22O00626 93 aa1.37□□□□□ -2.19
LIMA1-210ENST00000552045 NAA60Q9H7X0 242 aa1.37□□□□□ -2.19
LIMA1-210ENST00000552045 TNCP24821 2201 aa1.37□□□□□ -2.19
LIMA1-210ENST00000552045 TRBV10-3A0A0K0K1G6 114 aa1.35□□□□□ -2.19
LIMA1-210ENST00000552045 MCRIP1C9JLW8 97 aa1.35□□□□□ -2.19
LIMA1-210ENST00000552045 M0R1W7 72 aa1.35□□□□□ -2.19
LIMA1-210ENST00000552045 DEFB4AO15263 64 aa1.35□□□□□ -2.19
LIMA1-210ENST00000552045 Q6AWC8 147 aa1.35□□□□□ -2.19
LIMA1-210ENST00000552045 PP6455Q8WZ26 134 aa1.35□□□□□ -2.19
LIMA1-210ENST00000552045 C10orf95Q9H7T3 257 aa1.35□□□□□ -2.19
LIMA1-210ENST00000552045 AHNAK2Q8IVF2 5795 aa1.35□□□□□ -2.19
LIMA1-210ENST00000552045 SMIM6P0DI80 62 aa1.34□□□□□ -2.19
LIMA1-210ENST00000552045 RBP2P50120 134 aa1.34□□□□□ -2.19
LIMA1-210ENST00000552045 NCBP2-AS2Q69YL0 99 aa1.34□□□□□ -2.19
LIMA1-210ENST00000552045 ZNF818PQ6ZRF7 136 aa1.34□□□□□ -2.19
LIMA1-210ENST00000552045 TCEAL7Q9BRU2 100 aa1.34□□□□□ -2.19
LIMA1-210ENST00000552045 KRTAP2-1Q9BYU5 128 aa1.34□□□□□ -2.19
LIMA1-210ENST00000552045 V9GYV3 84 aa1.34□□□□□ -2.19
LIMA1-210ENST00000552045 DNAH8Q96JB1 4490 aa1.34□□□□□ -2.2
LIMA1-210ENST00000552045 AKAIN1P0CW23 69 aa1.33□□□□□ -2.2
LIMA1-210ENST00000552045 C12orf73Q69YU5 71 aa1.33□□□□□ -2.2
LIMA1-210ENST00000552045 HILPDAQ9Y5L2 63 aa1.33□□□□□ -2.2
LIMA1-210ENST00000552045 TRBV7-1A0A0A6YYK4 115 aa1.32□□□□□ -2.2
LIMA1-210ENST00000552045 C20orf202A1L168 122 aa1.32□□□□□ -2.2
LIMA1-210ENST00000552045 M0R2T5 61 aa1.32□□□□□ -2.2
LIMA1-210ENST00000552045 GYPAP02724 150 aa1.32□□□□□ -2.2
LIMA1-210ENST00000552045 CCL18P55774 89 aa1.32□□□□□ -2.2
LIMA1-210ENST00000552045 MRPS10P82664 201 aaKnown RBP1.32□□□□□ -2.2
LIMA1-210ENST00000552045 Q8N8P6 123 aa1.32□□□□□ -2.2
LIMA1-210ENST00000552045 LINC01600Q96MT4 127 aa1.32□□□□□ -2.2
LIMA1-210ENST00000552045 SNAPC5O75971 98 aa1.31□□□□□ -2.2
LIMA1-210ENST00000552045 Q56UQ5 140 aa1.31□□□□□ -2.2
LIMA1-210ENST00000552045 PPP3R2Q96LZ3 170 aa1.31□□□□□ -2.2
LIMA1-210ENST00000552045 Q96NJ1 140 aa1.31□□□□□ -2.2
LIMA1-210ENST00000552045 FAM103A1Q9BTL3 118 aaKnown RBP1.31□□□□□ -2.2
LIMA1-210ENST00000552045 PIGBOS1A0A0B4J2F0 54 aa1.3□□□□□ -2.2
LIMA1-210ENST00000552045 F2Z2F3 143 aa1.3□□□□□ -2.2
LIMA1-210ENST00000552045 GNG4P50150 75 aa1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms