RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 ASB16-AS1Q495Z4 193 aa6.32□□□□□ -1.4
PTCH1-220ENST00000550136 Q8N9L7 120 aa6.32□□□□□ -1.4
PTCH1-220ENST00000550136 KMT2CQ8NEZ4 4911 aaKnown RBP6.32□□□□□ -1.4
PTCH1-220ENST00000550136 LINC00612Q8N6U2 182 aa6.31□□□□□ -1.4
PTCH1-220ENST00000550136 NPBQ8NG41 125 aa6.31□□□□□ -1.4
PTCH1-220ENST00000550136 LINC00208Q96KT6 92 aa6.31□□□□□ -1.4
PTCH1-220ENST00000550136 CELA1Q9UNI1 258 aa6.31□□□□□ -1.4
PTCH1-220ENST00000550136 K7EQD1 137 aa6.31□□□□□ -1.4
PTCH1-220ENST00000550136 ATP6V0E1O15342 81 aa6.31□□□□□ -1.4
PTCH1-220ENST00000550136 CASC2Q6XLA1 102 aa6.31□□□□□ -1.4
PTCH1-220ENST00000550136 IGHV4-61A0A0C4DH41 118 aa6.3□□□□□ -1.4
PTCH1-220ENST00000550136 ZNF706Q9Y5V0 76 aaPredicted RBP6.3□□□□□ -1.4
PTCH1-220ENST00000550136 LINC00575Q6W349 94 aa6.3□□□□□ -1.4
PTCH1-220ENST00000550136 SMIM29Q86T20 159 aa6.3□□□□□ -1.4
PTCH1-220ENST00000550136 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.29□□□□□ -1.4
PTCH1-220ENST00000550136 A0A0A0MQY5 61 aa6.29□□□□□ -1.4
PTCH1-220ENST00000550136 IGHV1-46P01743 117 aa6.29□□□□□ -1.4
PTCH1-220ENST00000550136 IGHV3-53P01767 116 aa6.29□□□□□ -1.4
PTCH1-220ENST00000550136 PRB2P02812 416 aaPredicted RBP6.29□□□□□ -1.4
PTCH1-220ENST00000550136 DEFB1P60022 68 aa6.29□□□□□ -1.4
PTCH1-220ENST00000550136 TRGV2A0A075B6R0 118 aa6.28□□□□□ -1.4
PTCH1-220ENST00000550136 WNK1Q9H4A3 2382 aa6.28□□□□□ -1.4
PTCH1-220ENST00000550136 NDUFA4O00483 81 aa6.28□□□□□ -1.4
PTCH1-220ENST00000550136 IGHV4-38-2P0DP08 117 aa6.28□□□□□ -1.4
PTCH1-220ENST00000550136 C6orf99Q4VX62 202 aa6.28□□□□□ -1.4
PTCH1-220ENST00000550136 A0A087X002 238 aa6.27□□□□□ -1.41
PTCH1-220ENST00000550136 SPANXA2-OT1Q8N9U9 137 aa6.27□□□□□ -1.41
PTCH1-220ENST00000550136 ETDCA0A1B0GVM5 59 aa6.26□□□□□ -1.41
PTCH1-220ENST00000550136 FSHBP01225 129 aa6.26□□□□□ -1.41
PTCH1-220ENST00000550136 KLK9Q2XQG4 91 aa6.26□□□□□ -1.41
PTCH1-220ENST00000550136 B4DSR2 109 aa6.25□□□□□ -1.41
PTCH1-220ENST00000550136 IGHV3-73A0A0B4J1V6 119 aa6.25□□□□□ -1.41
PTCH1-220ENST00000550136 COX7BP24311 80 aa6.25□□□□□ -1.41
PTCH1-220ENST00000550136 ADM2Q7Z4H4 148 aa6.25□□□□□ -1.41
PTCH1-220ENST00000550136 RETNLBQ9BQ08 111 aa6.25□□□□□ -1.41
PTCH1-220ENST00000550136 PROK1P58294 105 aa6.24□□□□□ -1.41
PTCH1-220ENST00000550136 C10orf25Q5T742 122 aa6.24□□□□□ -1.41
PTCH1-220ENST00000550136 LYPD2Q6UXB3 125 aa6.24□□□□□ -1.41
PTCH1-220ENST00000550136 PLAC8Q9NZF1 115 aa6.23□□□□□ -1.41
PTCH1-220ENST00000550136 SORL1Q92673 2214 aa6.23□□□□□ -1.41
PTCH1-220ENST00000550136 ZFP36P26651 326 aaKnown RBP6.23□□□□□ -1.41
PTCH1-220ENST00000550136 BIRC6Q9NR09 4857 aa6.23□□□□□ -1.41
PTCH1-220ENST00000550136 LINC00476Q8WZB0 136 aa6.22□□□□□ -1.41
PTCH1-220ENST00000550136 KRTAP4-12Q9BQ66 201 aa6.22□□□□□ -1.41
PTCH1-220ENST00000550136 TOMM7Q9P0U1 55 aa6.22□□□□□ -1.41
PTCH1-220ENST00000550136 LINC01558Q9Y6Z2 57 aa6.22□□□□□ -1.41
PTCH1-220ENST00000550136 COX7A1P24310 79 aa6.22□□□□□ -1.41
PTCH1-220ENST00000550136 PRR3P79522 188 aaKnown RBP6.22□□□□□ -1.41
PTCH1-220ENST00000550136 LCE3BQ5TA77 95 aa6.22□□□□□ -1.41
PTCH1-220ENST00000550136 Q8N9W7 124 aa6.22□□□□□ -1.41
PTCH1-220ENST00000550136 CMYA5Q8N3K9 4069 aa6.21□□□□□ -1.42
PTCH1-220ENST00000550136 ST20-AS1Q8NBB2 130 aa6.21□□□□□ -1.42
PTCH1-220ENST00000550136 KAAG1Q9UBP8 84 aa6.21□□□□□ -1.42
PTCH1-220ENST00000550136 Q6ZQY7 126 aa6.21□□□□□ -1.42
PTCH1-220ENST00000550136 WFDC10AQ9H1F0 79 aa6.21□□□□□ -1.42
PTCH1-220ENST00000550136 IGHV6-1A0A0B4J1U7 121 aa6.2□□□□□ -1.42
PTCH1-220ENST00000550136 IGHV3OR16-9A0A0B4J2B5 98 aa6.2□□□□□ -1.42
PTCH1-220ENST00000550136 Q8NAQ8 132 aa6.2□□□□□ -1.42
PTCH1-220ENST00000550136 ODF3BA8MYP8 253 aa6.2□□□□□ -1.42
PTCH1-220ENST00000550136 LMO4P61968 165 aa6.2□□□□□ -1.42
PTCH1-220ENST00000550136 IGLV1-51P01701 117 aa6.19□□□□□ -1.42
PTCH1-220ENST00000550136 IGHV4-59P01825 116 aa6.19□□□□□ -1.42
PTCH1-220ENST00000550136 MSMBP08118 114 aa6.19□□□□□ -1.42
PTCH1-220ENST00000550136 SPINK7P58062 85 aa6.19□□□□□ -1.42
PTCH1-220ENST00000550136 KCNQ1DNQ9H478 68 aa6.19□□□□□ -1.42
PTCH1-220ENST00000550136 Q6ZSN1 163 aa6.18□□□□□ -1.42
PTCH1-220ENST00000550136 KRTAP17-1Q9BYP8 105 aa6.17□□□□□ -1.42
PTCH1-220ENST00000550136 CNBPP62633 177 aaKnown RBP6.17□□□□□ -1.42
PTCH1-220ENST00000550136 MINOS1Q5TGZ0 78 aa6.17□□□□□ -1.42
PTCH1-220ENST00000550136 DPM3Q9P2X0 92 aa6.17□□□□□ -1.42
PTCH1-220ENST00000550136 HIGD2BQ4VC39 106 aa6.16□□□□□ -1.42
PTCH1-220ENST00000550136 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.16□□□□□ -1.42
PTCH1-220ENST00000550136 RTL8CO15255 209 aa6.16□□□□□ -1.42
PTCH1-220ENST00000550136 COA5Q86WW8 74 aa6.16□□□□□ -1.42
PTCH1-220ENST00000550136 IGHV4-30-4P0DP06 118 aa6.15□□□□□ -1.42
PTCH1-220ENST00000550136 SPAG11BQ08648 103 aa6.15□□□□□ -1.42
PTCH1-220ENST00000550136 DNAJC9-AS1A6NH13 148 aa6.15□□□□□ -1.43
PTCH1-220ENST00000550136 ODF3L2Q3SX64 289 aa6.15□□□□□ -1.43
PTCH1-220ENST00000550136 KPRPQ5T749 579 aaPredicted RBP6.15□□□□□ -1.43
PTCH1-220ENST00000550136 KLK12Q9UKR0 248 aa6.15□□□□□ -1.43
PTCH1-220ENST00000550136 A0A1W2PNM2 257 aa6.14□□□□□ -1.43
PTCH1-220ENST00000550136 IGLV1-40P01703 118 aa6.14□□□□□ -1.43
PTCH1-220ENST00000550136 TENM3Q9P273 2699 aa6.13□□□□□ -1.43
PTCH1-220ENST00000550136 H3BPC8 53 aa6.13□□□□□ -1.43
PTCH1-220ENST00000550136 EPPK1P58107 5090 aaKnown RBP6.12□□□□□ -1.43
PTCH1-220ENST00000550136 ZNF702PQ9H963 129 aa6.12□□□□□ -1.43
PTCH1-220ENST00000550136 IGKV3-7A0A075B6H7 116 aa6.11□□□□□ -1.43
PTCH1-220ENST00000550136 LYNX1G3V0Z9 82 aa6.11□□□□□ -1.43
PTCH1-220ENST00000550136 LYNX1P0DP58 116 aa6.11□□□□□ -1.43
PTCH1-220ENST00000550136 A8MTW9 85 aa6.11□□□□□ -1.43
PTCH1-220ENST00000550136 A0A1B0GW54 56 aa6.1□□□□□ -1.43
PTCH1-220ENST00000550136 SPINK13Q1W4C9 94 aa6.1□□□□□ -1.43
PTCH1-220ENST00000550136 C1orf134Q5TEV5 83 aa6.1□□□□□ -1.43
PTCH1-220ENST00000550136 X6R8D5 127 aa6.1□□□□□ -1.43
PTCH1-220ENST00000550136 COX17Q14061 63 aa6.1□□□□□ -1.43
PTCH1-220ENST00000550136 KRTAP19-1Q8IUB9 90 aa6.1□□□□□ -1.43
PTCH1-220ENST00000550136 CSAG1Q6PB30 78 aa6.09□□□□□ -1.43
PTCH1-220ENST00000550136 C19orf73Q9NVV2 129 aa6.09□□□□□ -1.43
PTCH1-220ENST00000550136 SPAG11AQ6PDA7 123 aa6.09□□□□□ -1.43
PTCH1-220ENST00000550136 RHPN1-AS1Q9BWJ2 59 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms