RNA–Protein interactions for RNA: ENST00000549547.1

PRPF40B-210, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-210ENST00000549547 Q8NDZ9 215 aa7.87□□□□□ -1.15
PRPF40B-210ENST00000549547 A0A1B0GV72 72 aa7.86□□□□□ -1.15
PRPF40B-210ENST00000549547 TMEM126AQ9H061 195 aa7.86□□□□□ -1.15
PRPF40B-210ENST00000549547 HIGD1BQ9P298 99 aa7.86□□□□□ -1.15
PRPF40B-210ENST00000549547 TIMM17BO60830 172 aa7.85□□□□□ -1.15
PRPF40B-210ENST00000549547 DAND5Q8N907 189 aa7.85□□□□□ -1.15
PRPF40B-210ENST00000549547 NCR3O14931 201 aa7.84□□□□□ -1.15
PRPF40B-210ENST00000549547 KRTAP10-8P60410 259 aa7.84□□□□□ -1.15
PRPF40B-210ENST00000549547 LITAFQ99732 161 aa7.84□□□□□ -1.15
PRPF40B-210ENST00000549547 TRBV10-2A0A0K0K1G8 114 aa7.83□□□□□ -1.16
PRPF40B-210ENST00000549547 PRYO14603 147 aa7.83□□□□□ -1.16
PRPF40B-210ENST00000549547 NDUFC2O95298 119 aa7.83□□□□□ -1.16
PRPF40B-210ENST00000549547 FAM19A1Q7Z5A9 133 aa7.83□□□□□ -1.16
PRPF40B-210ENST00000549547 KRTAP13-1Q8IUC0 172 aa7.83□□□□□ -1.16
PRPF40B-210ENST00000549547 SPANXB1Q9NS25 103 aaPredicted RBP7.83□□□□□ -1.16
PRPF40B-210ENST00000549547 RPL13AP40429 203 aaKnown RBP7.82□□□□□ -1.16
PRPF40B-210ENST00000549547 ADAMTSL4-AS1Q5T5F5 129 aa7.82□□□□□ -1.16
PRPF40B-210ENST00000549547 SCGB1D4Q6XE38 83 aa7.82□□□□□ -1.16
PRPF40B-210ENST00000549547 A6NJY4 79 aa7.81□□□□□ -1.16
PRPF40B-210ENST00000549547 J3QR89 54 aa7.81□□□□□ -1.16
PRPF40B-210ENST00000549547 KRTAP1-4P0C5Y4 121 aa7.81□□□□□ -1.16
PRPF40B-210ENST00000549547 HINT1P49773 126 aaPredicted RBP7.81□□□□□ -1.16
PRPF40B-210ENST00000549547 TRBV10-3A0A0K0K1G6 114 aa7.8□□□□□ -1.16
PRPF40B-210ENST00000549547 PRLHP81277 87 aa7.8□□□□□ -1.16
PRPF40B-210ENST00000549547 LINC00337Q8N6G1 96 aa7.8□□□□□ -1.16
PRPF40B-210ENST00000549547 KCNQ1DNQ9H478 68 aa7.8□□□□□ -1.16
PRPF40B-210ENST00000549547 NPC2P61916 151 aa7.79□□□□□ -1.16
PRPF40B-210ENST00000549547 S100A7L2Q5SY68 101 aa7.79□□□□□ -1.16
PRPF40B-210ENST00000549547 PRR26Q8N8Z3 221 aa7.79□□□□□ -1.16
PRPF40B-210ENST00000549547 COPS9Q8WXC6 57 aa7.79□□□□□ -1.16
PRPF40B-210ENST00000549547 SPANXDQ9BXN6 97 aa7.79□□□□□ -1.16
PRPF40B-210ENST00000549547 SPANXCQ9NY87 97 aa7.79□□□□□ -1.16
PRPF40B-210ENST00000549547 HMCN2Q8NDA2 5059 aa7.78□□□□□ -1.16
PRPF40B-210ENST00000549547 A6NDN8 102 aa7.78□□□□□ -1.16
PRPF40B-210ENST00000549547 SOSTDC1Q6X4U4 206 aa7.78□□□□□ -1.16
PRPF40B-210ENST00000549547 LINC00308Q8TCZ7 52 aa7.78□□□□□ -1.16
PRPF40B-210ENST00000549547 ETDCA0A1B0GVM5 59 aa7.77□□□□□ -1.17
PRPF40B-210ENST00000549547 EIF4EBP3O60516 100 aaPredicted RBP7.77□□□□□ -1.17
PRPF40B-210ENST00000549547 SPRR1AP35321 89 aa7.77□□□□□ -1.17
PRPF40B-210ENST00000549547 TAL2Q16559 108 aa7.77□□□□□ -1.17
PRPF40B-210ENST00000549547 TAX1BP3O14907 124 aa7.76□□□□□ -1.17
PRPF40B-210ENST00000549547 IGLV6-57P01721 117 aa7.76□□□□□ -1.17
PRPF40B-210ENST00000549547 CRYGAP11844 174 aa7.76□□□□□ -1.17
PRPF40B-210ENST00000549547 HSD52Q0P140 79 aa7.76□□□□□ -1.17
PRPF40B-210ENST00000549547 Q6ZVH6 145 aa7.76□□□□□ -1.17
PRPF40B-210ENST00000549547 HIST1H4GQ99525 98 aa7.76□□□□□ -1.17
PRPF40B-210ENST00000549547 HIGD2AQ9BW72 106 aa7.76□□□□□ -1.17
PRPF40B-210ENST00000549547 FAM229BQ4G0N7 80 aa7.75□□□□□ -1.17
PRPF40B-210ENST00000549547 BVES-AS1Q5T3Y7 98 aa7.75□□□□□ -1.17
PRPF40B-210ENST00000549547 MUSTN1Q8IVN3 82 aa7.75□□□□□ -1.17
PRPF40B-210ENST00000549547 CEND1Q8N111 149 aa7.75□□□□□ -1.17
PRPF40B-210ENST00000549547 ZNF706Q9Y5V0 76 aaPredicted RBP7.75□□□□□ -1.17
PRPF40B-210ENST00000549547 TRAV23DV6A0A075B6W5 121 aa7.74□□□□□ -1.17
PRPF40B-210ENST00000549547 IFITM1P13164 125 aa7.74□□□□□ -1.17
PRPF40B-210ENST00000549547 PPDPFQ9H3Y8 114 aa7.74□□□□□ -1.17
PRPF40B-210ENST00000549547 KRTAP4-16G5E9R7 235 aaPredicted RBP7.73□□□□□ -1.17
PRPF40B-210ENST00000549547 FXYD2P54710 66 aa7.73□□□□□ -1.17
PRPF40B-210ENST00000549547 SIGMAR1Q99720 223 aa7.73□□□□□ -1.17
PRPF40B-210ENST00000549547 C9orf118A6NHY6 69 aa7.71□□□□□ -1.18
PRPF40B-210ENST00000549547 B5MCH6 92 aa7.71□□□□□ -1.18
PRPF40B-210ENST00000549547 K7EP34 96 aa7.71□□□□□ -1.18
PRPF40B-210ENST00000549547 OR13C6PQ8NH95 151 aa7.71□□□□□ -1.18
PRPF40B-210ENST00000549547 TYMSOSQ8TAI1 123 aa7.71□□□□□ -1.18
PRPF40B-210ENST00000549547 A0A087X002 238 aa7.7□□□□□ -1.18
PRPF40B-210ENST00000549547 ZNF73O43830 326 aaPredicted RBP7.7□□□□□ -1.18
PRPF40B-210ENST00000549547 A4D1N5 150 aa7.69□□□□□ -1.18
PRPF40B-210ENST00000549547 Q6ZRX8 168 aa7.69□□□□□ -1.18
PRPF40B-210ENST00000549547 SMCR5Q8TEV8 140 aa7.69□□□□□ -1.18
PRPF40B-210ENST00000549547 SPRR4Q96PI1 79 aa7.69□□□□□ -1.18
PRPF40B-210ENST00000549547 ANAPC11Q9NYG5 84 aa7.68□□□□□ -1.18
PRPF40B-210ENST00000549547 A0A1B0GWB2 263 aa7.67□□□□□ -1.18
PRPF40B-210ENST00000549547 FABP2P12104 132 aa7.67□□□□□ -1.18
PRPF40B-210ENST00000549547 CFC1BP0CG36 223 aa7.66□□□□□ -1.18
PRPF40B-210ENST00000549547 CFC1P0CG37 223 aa7.66□□□□□ -1.18
PRPF40B-210ENST00000549547 KRTAP13-2Q52LG2 175 aa7.65□□□□□ -1.18
PRPF40B-210ENST00000549547 Q9BRP9 147 aa7.64□□□□□ -1.19
PRPF40B-210ENST00000549547 NHP2Q9NX24 153 aaKnown RBP7.64□□□□□ -1.19
PRPF40B-210ENST00000549547 TRAV13-2A0A0B4J235 113 aa7.63□□□□□ -1.19
PRPF40B-210ENST00000549547 A0A0B4J2C4 111 aa7.63□□□□□ -1.19
PRPF40B-210ENST00000549547 F8W1H4 67 aa7.63□□□□□ -1.19
PRPF40B-210ENST00000549547 K7ERJ3 54 aa7.62□□□□□ -1.19
PRPF40B-210ENST00000549547 LINC00483Q53H64 154 aa7.62□□□□□ -1.19
PRPF40B-210ENST00000549547 LINC00304Q8N9R0 145 aa7.62□□□□□ -1.19
PRPF40B-210ENST00000549547 DHRS4-AS1Q9P1J3 65 aa7.62□□□□□ -1.19
PRPF40B-210ENST00000549547 SPCS1Q9Y6A9 102 aa7.62□□□□□ -1.19
PRPF40B-210ENST00000549547 TRBV7-6A0A0J9YX20 115 aa7.61□□□□□ -1.19
PRPF40B-210ENST00000549547 A0A1W2PPM0 123 aa7.61□□□□□ -1.19
PRPF40B-210ENST00000549547 ERC2-IT1O76042 136 aa7.61□□□□□ -1.19
PRPF40B-210ENST00000549547 COX7BP24311 80 aa7.61□□□□□ -1.19
PRPF40B-210ENST00000549547 ELOF1P60002 83 aaKnown RBP7.61□□□□□ -1.19
PRPF40B-210ENST00000549547 C6orf99Q4VX62 202 aa7.61□□□□□ -1.19
PRPF40B-210ENST00000549547 GAGE2AQ6NT46 116 aa7.61□□□□□ -1.19
PRPF40B-210ENST00000549547 PRO1854Q9UHT4 67 aa7.6□□□□□ -1.19
PRPF40B-210ENST00000549547 C3orf22Q8N5N4 141 aa7.59□□□□□ -1.19
PRPF40B-210ENST00000549547 H3BUT2 72 aa7.58□□□□□ -1.2
PRPF40B-210ENST00000549547 TSPAN13O95857 204 aa7.58□□□□□ -1.2
PRPF40B-210ENST00000549547 SPAG11AQ6PDA7 123 aa7.58□□□□□ -1.2
PRPF40B-210ENST00000549547 RAB37Q96AX2 223 aa7.58□□□□□ -1.2
PRPF40B-210ENST00000549547 C4orf48Q5BLP8 95 aa7.57□□□□□ -1.2
PRPF40B-210ENST00000549547 LRP2P98164 4655 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms