RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 CXCL6P80162 114 aa10.32□□□□□ -0.76
LDLR-204ENST00000545707 LINC01556Q5JQF7 62 aa10.32□□□□□ -0.76
LDLR-204ENST00000545707 RPS28P62857 69 aaKnown RBP10.32□□□□□ -0.76
LDLR-204ENST00000545707 C11orf45Q8TAV5 145 aa10.32□□□□□ -0.76
LDLR-204ENST00000545707 BAHCC1Q9P281 2608 aa10.31□□□□□ -0.76
LDLR-204ENST00000545707 SNURFQ9Y675 71 aa10.31□□□□□ -0.76
LDLR-204ENST00000545707 TRAV7A0A075B6U4 112 aa10.31□□□□□ -0.76
LDLR-204ENST00000545707 RPL37AP8A6NKH3 93 aa10.31□□□□□ -0.76
LDLR-204ENST00000545707 CASC10Q5T4H9 136 aa10.31□□□□□ -0.76
LDLR-204ENST00000545707 NKAPP1Q8N9T2 125 aa10.31□□□□□ -0.76
LDLR-204ENST00000545707 C7orf33Q8WU49 177 aa10.31□□□□□ -0.76
LDLR-204ENST00000545707 FAM168BA1KXE4 195 aa10.29□□□□□ -0.76
LDLR-204ENST00000545707 C3orf84H3BNL1 204 aa10.28□□□□□ -0.76
LDLR-204ENST00000545707 TM2D3Q9BRN9 247 aa10.28□□□□□ -0.76
LDLR-204ENST00000545707 PRB2P02812 416 aaPredicted RBP10.27□□□□□ -0.77
LDLR-204ENST00000545707 RMI2Q96E14 147 aa10.27□□□□□ -0.77
LDLR-204ENST00000545707 KCNQ1DNQ9H478 68 aa10.27□□□□□ -0.77
LDLR-204ENST00000545707 Q8N377 158 aa10.26□□□□□ -0.77
LDLR-204ENST00000545707 NBEAL1Q6ZS30 2694 aa10.26□□□□□ -0.77
LDLR-204ENST00000545707 H7BZZ5 65 aa10.25□□□□□ -0.77
LDLR-204ENST00000545707 KRTAP24-1Q3LI83 254 aa10.25□□□□□ -0.77
LDLR-204ENST00000545707 BPY2O14599 106 aa10.24□□□□□ -0.77
LDLR-204ENST00000545707 DNAH10OSP0CZ25 163 aa10.23□□□□□ -0.77
LDLR-204ENST00000545707 NREPQ16612 68 aa10.23□□□□□ -0.77
LDLR-204ENST00000545707 LINC00588Q9Y4M8 146 aa10.23□□□□□ -0.77
LDLR-204ENST00000545707 BCE1O60756 84 aa10.22□□□□□ -0.77
LDLR-204ENST00000545707 ST20-AS1Q8NBB2 130 aa10.22□□□□□ -0.77
LDLR-204ENST00000545707 Q9BRP9 147 aa10.22□□□□□ -0.77
LDLR-204ENST00000545707 COL6A5A8TX70 2615 aa10.22□□□□□ -0.77
LDLR-204ENST00000545707 FAM236DA0A1B0GTK5 79 aa10.21□□□□□ -0.77
LDLR-204ENST00000545707 FAM236CP0DP71 79 aa10.21□□□□□ -0.77
LDLR-204ENST00000545707 KRTAP7-1Q8IUC3 87 aa10.21□□□□□ -0.77
LDLR-204ENST00000545707 DNAH3Q8TD57 4116 aa10.2□□□□□ -0.78
LDLR-204ENST00000545707 IGKV4-1P06312 121 aa10.19□□□□□ -0.78
LDLR-204ENST00000545707 KLKP1Q107X0 134 aa10.19□□□□□ -0.78
LDLR-204ENST00000545707 F8WEM9 126 aa10.18□□□□□ -0.78
LDLR-204ENST00000545707 C4orf26Q17RF5 130 aa10.18□□□□□ -0.78
LDLR-204ENST00000545707 Q6ZRX8 168 aa10.18□□□□□ -0.78
LDLR-204ENST00000545707 F8WDY8 70 aa10.18□□□□□ -0.78
LDLR-204ENST00000545707 MRAPQ8TCY5 172 aa10.18□□□□□ -0.78
LDLR-204ENST00000545707 DNAH1Q9P2D7 4330 aa10.18□□□□□ -0.78
LDLR-204ENST00000545707 IGLV1-50A0A075B6I6 118 aa10.17□□□□□ -0.78
LDLR-204ENST00000545707 KRTAP4-16G5E9R7 235 aaPredicted RBP10.17□□□□□ -0.78
LDLR-204ENST00000545707 LYSTQ99698 3801 aa10.17□□□□□ -0.78
LDLR-204ENST00000545707 ETDCA0A1B0GVM5 59 aa10.17□□□□□ -0.78
LDLR-204ENST00000545707 ERC2-IT1O76042 136 aa10.17□□□□□ -0.78
LDLR-204ENST00000545707 TLX1NBP0CAT3 122 aa10.16□□□□□ -0.78
LDLR-204ENST00000545707 IGLV5-48A0A075B6I7 105 aa10.16□□□□□ -0.78
LDLR-204ENST00000545707 A0A1W2PNM2 257 aa10.15□□□□□ -0.78
LDLR-204ENST00000545707 DNAH10Q8IVF4 4471 aa10.15□□□□□ -0.78
LDLR-204ENST00000545707 Q5XG85 94 aa10.15□□□□□ -0.79
LDLR-204ENST00000545707 DHRS4-AS1Q9P1J3 65 aa10.14□□□□□ -0.79
LDLR-204ENST00000545707 C1orf137Q5JT78 98 aa10.13□□□□□ -0.79
LDLR-204ENST00000545707 PLA2G2DQ9UNK4 145 aa10.13□□□□□ -0.79
LDLR-204ENST00000545707 A0A0G2JQZ4 141 aa10.12□□□□□ -0.79
LDLR-204ENST00000545707 A0A1W2PNN7 141 aa10.12□□□□□ -0.79
LDLR-204ENST00000545707 PRYO14603 147 aa10.12□□□□□ -0.79
LDLR-204ENST00000545707 SPRR1AP35321 89 aa10.12□□□□□ -0.79
LDLR-204ENST00000545707 MRPL55Q7Z7F7 128 aaKnown RBP10.12□□□□□ -0.79
LDLR-204ENST00000545707 UBE2BP63146 152 aa10.11□□□□□ -0.79
LDLR-204ENST00000545707 HRCT1Q6UXD1 115 aa10.11□□□□□ -0.79
LDLR-204ENST00000545707 TMEM254Q8TBM7 123 aa10.11□□□□□ -0.79
LDLR-204ENST00000545707 HUWE1Q7Z6Z7 4374 aaKnown RBP10.11□□□□□ -0.79
LDLR-204ENST00000545707 FUSP35637 526 aaKnown RBP eCLIP10.11□□□□□ -0.79
LDLR-204ENST00000545707 CSMD3Q7Z407 3707 aa10.1□□□□□ -0.79
LDLR-204ENST00000545707 TNP2Q05952 138 aa10.09□□□□□ -0.79
LDLR-204ENST00000545707 IGLV5-37A0A075B6J1 123 aa10.09□□□□□ -0.79
LDLR-204ENST00000545707 OCR1Q9BZK8 76 aa10.09□□□□□ -0.79
LDLR-204ENST00000545707 SRRM2Q9UQ35 2752 aaKnown RBP10.09□□□□□ -0.79
LDLR-204ENST00000545707 C5orf47Q569G3 176 aa10.08□□□□□ -0.8
LDLR-204ENST00000545707 SERP1Q9Y6X1 66 aa10.08□□□□□ -0.8
LDLR-204ENST00000545707 MGAM2Q2M2H8 2515 aa10.07□□□□□ -0.8
LDLR-204ENST00000545707 STAB2Q8WWQ8 2551 aa10.06□□□□□ -0.8
LDLR-204ENST00000545707 IGKV2-24A0A0C4DH68 120 aa10.06□□□□□ -0.8
LDLR-204ENST00000545707 SMIM29Q86T20 159 aa10.06□□□□□ -0.8
LDLR-204ENST00000545707 FAM30AQ9NZY2 134 aa10.06□□□□□ -0.8
LDLR-204ENST00000545707 TENM2Q9NT68 2774 aa10.05□□□□□ -0.8
LDLR-204ENST00000545707 Q8NBF4 154 aa10.05□□□□□ -0.8
LDLR-204ENST00000545707 EPM2AB3EWF7 344 aa10.05□□□□□ -0.8
LDLR-204ENST00000545707 REG3GQ6UW15 175 aa10.04□□□□□ -0.8
LDLR-204ENST00000545707 HIGD2AQ9BW72 106 aa10.04□□□□□ -0.8
LDLR-204ENST00000545707 COL7A1Q02388 2944 aa10.04□□□□□ -0.8
LDLR-204ENST00000545707 KRTAP1-5Q9BYS1 174 aa10.03□□□□□ -0.8
LDLR-204ENST00000545707 PRLHP81277 87 aa10.03□□□□□ -0.8
LDLR-204ENST00000545707 K7EIL1 84 aa10.02□□□□□ -0.81
LDLR-204ENST00000545707 DNAH9Q9NYC9 4486 aa10.02□□□□□ -0.81
LDLR-204ENST00000545707 A0A096LNI7 61 aa10.02□□□□□ -0.81
LDLR-204ENST00000545707 NDUFC1O43677 76 aa10.02□□□□□ -0.81
LDLR-204ENST00000545707 A0A0U1RQV1 116 aa10.01□□□□□ -0.81
LDLR-204ENST00000545707 DSCR10P59022 87 aa10.01□□□□□ -0.81
LDLR-204ENST00000545707 DEFB116Q30KQ4 102 aa10.01□□□□□ -0.81
LDLR-204ENST00000545707 K7EQZ3 153 aa10□□□□□ -0.81
LDLR-204ENST00000545707 LINC00476Q8WZB0 136 aa10□□□□□ -0.81
LDLR-204ENST00000545707 SPRR4Q96PI1 79 aa10□□□□□ -0.81
LDLR-204ENST00000545707 LINC00474Q9P2X8 69 aa9.99□□□□□ -0.81
LDLR-204ENST00000545707 FP248Q71RG6 208 aaPredicted RBP9.98□□□□□ -0.81
LDLR-204ENST00000545707 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.98□□□□□ -0.81
LDLR-204ENST00000545707 IGFL1Q6UW32 110 aa9.96□□□□□ -0.82
LDLR-204ENST00000545707 A0A1B0GW54 56 aa9.95□□□□□ -0.82
LDLR-204ENST00000545707 DNAH7Q8WXX0 4024 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms