RNA–Protein interactions for RNA: ENST00000545425.2

FOXA1-202, Transcript of forkhead box A1, humanhuman

TSL 2

Gene FOXA1, Length 1,806 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-202ENST00000545425 SMIM20Q8N5G0 67 aa15.34■□□□□ 0.05
FOXA1-202ENST00000545425 TLX1NBP0CAT3 122 aa15.33■□□□□ 0.04
FOXA1-202ENST00000545425 PLA2G2DQ9UNK4 145 aa15.33■□□□□ 0.04
FOXA1-202ENST00000545425 UPK3BQ9BT76 320 aa15.32■□□□□ 0.04
FOXA1-202ENST00000545425 Q6ZVQ6 151 aa15.31■□□□□ 0.04
FOXA1-202ENST00000545425 IGKV2D-24A0A075B6R9 120 aa15.3■□□□□ 0.04
FOXA1-202ENST00000545425 TMEM258P61165 79 aa15.3■□□□□ 0.04
FOXA1-202ENST00000545425 LINC01547P58512 204 aaPredicted RBP15.29■□□□□ 0.04
FOXA1-202ENST00000545425 KCNQ1DNQ9H478 68 aa15.29■□□□□ 0.04
FOXA1-202ENST00000545425 SVIPQ8NHG7 77 aa15.28■□□□□ 0.04
FOXA1-202ENST00000545425 RPS28P62857 69 aaKnown RBP15.27■□□□□ 0.03
FOXA1-202ENST00000545425 Q6ZRP5 223 aa15.27■□□□□ 0.03
FOXA1-202ENST00000545425 TRAV10A0A0B4J240 114 aa15.26■□□□□ 0.03
FOXA1-202ENST00000545425 FAM19A1Q7Z5A9 133 aa15.26■□□□□ 0.03
FOXA1-202ENST00000545425 NKAPP1Q8N9T2 125 aa15.26■□□□□ 0.03
FOXA1-202ENST00000545425 RMI2Q96E14 147 aa15.26■□□□□ 0.03
FOXA1-202ENST00000545425 DNAH9Q9NYC9 4486 aa15.24■□□□□ 0.03
FOXA1-202ENST00000545425 COL7A1Q02388 2944 aa15.24■□□□□ 0.03
FOXA1-202ENST00000545425 IGLV5-37A0A075B6J1 123 aa15.24■□□□□ 0.03
FOXA1-202ENST00000545425 A0A1B0GW54 56 aa15.22■□□□□ 0.03
FOXA1-202ENST00000545425 J3KT08 172 aa15.21■□□□□ 0.03
FOXA1-202ENST00000545425 HAMPP81172 84 aa15.21■□□□□ 0.03
FOXA1-202ENST00000545425 WWC2-AS2Q96NR7 200 aa15.21■□□□□ 0.03
FOXA1-202ENST00000545425 TRAV7A0A075B6U4 112 aa15.2■□□□□ 0.02
FOXA1-202ENST00000545425 DHRS4-AS1Q9P1J3 65 aa15.2■□□□□ 0.02
FOXA1-202ENST00000545425 LOC107984640A0A0U1RRK4 108 aa15.19■□□□□ 0.02
FOXA1-202ENST00000545425 PRYO14603 147 aa15.18■□□□□ 0.02
FOXA1-202ENST00000545425 M0R2N4 97 aa15.17■□□□□ 0.02
FOXA1-202ENST00000545425 C7orf33Q8WU49 177 aa15.15■□□□□ 0.02
FOXA1-202ENST00000545425 TM2D3Q9BRN9 247 aa15.14■□□□□ 0.01
FOXA1-202ENST00000545425 TENM3Q9P273 2699 aa15.13■□□□□ 0.01
FOXA1-202ENST00000545425 STAB2Q8WWQ8 2551 aa15.13■□□□□ 0.01
FOXA1-202ENST00000545425 IGLV5-48A0A075B6I7 105 aa15.1■□□□□ 0.01
FOXA1-202ENST00000545425 SPRR1AP35321 89 aa15.1■□□□□ 0.01
FOXA1-202ENST00000545425 LINC00588Q9Y4M8 146 aa15.1■□□□□ 0.01
FOXA1-202ENST00000545425 SERTAD4-AS1Q5TG53 156 aa15.09■□□□□ 0.01
FOXA1-202ENST00000545425 Q6ZRX8 168 aa15.09■□□□□ 0.01
FOXA1-202ENST00000545425 IGLV1-50A0A075B6I6 118 aa15.07■□□□□ 0
FOXA1-202ENST00000545425 KRTAP4-16G5E9R7 235 aaPredicted RBP15.06■□□□□ 0
FOXA1-202ENST00000545425 CYSTM1Q9H1C7 97 aa15.05■□□□□ -0
FOXA1-202ENST00000545425 ETDCA0A1B0GVM5 59 aa15.04■□□□□ -0
FOXA1-202ENST00000545425 HUWE1Q7Z6Z7 4374 aaKnown RBP15.04■□□□□ -0
FOXA1-202ENST00000545425 NREPQ16612 68 aa15.03■□□□□ -0
FOXA1-202ENST00000545425 Q8N377 158 aa15.03■□□□□ -0
FOXA1-202ENST00000545425 C3orf84H3BNL1 204 aa15.03■□□□□ -0
FOXA1-202ENST00000545425 KLKP1Q107X0 134 aa15.03■□□□□ -0
FOXA1-202ENST00000545425 DPH3Q96FX2 82 aa15.03■□□□□ -0
FOXA1-202ENST00000545425 ERC2-IT1O76042 136 aa15.01□□□□□ -0.01
FOXA1-202ENST00000545425 FUSP35637 526 aaKnown RBP eCLIP15.01□□□□□ -0.01
FOXA1-202ENST00000545425 C20orf197Q8N268 126 aa15.01□□□□□ -0.01
FOXA1-202ENST00000545425 NDUFC1O43677 76 aa14.99□□□□□ -0.01
FOXA1-202ENST00000545425 MRPL55Q7Z7F7 128 aaKnown RBP14.97□□□□□ -0.01
FOXA1-202ENST00000545425 TNP2Q05952 138 aa14.96□□□□□ -0.01
FOXA1-202ENST00000545425 BPY2O14599 106 aa14.94□□□□□ -0.02
FOXA1-202ENST00000545425 Q9BRP9 147 aa14.94□□□□□ -0.02
FOXA1-202ENST00000545425 DEFB105AQ8NG35 78 aa14.92□□□□□ -0.02
FOXA1-202ENST00000545425 CASC10Q5T4H9 136 aa14.92□□□□□ -0.02
FOXA1-202ENST00000545425 FAM236DA0A1B0GTK5 79 aa14.91□□□□□ -0.02
FOXA1-202ENST00000545425 IGKV4-1P06312 121 aa14.91□□□□□ -0.02
FOXA1-202ENST00000545425 FAM236CP0DP71 79 aa14.91□□□□□ -0.02
FOXA1-202ENST00000545425 RPL37AP8A6NKH3 93 aa14.9□□□□□ -0.02
FOXA1-202ENST00000545425 SCXQ7RTU7 201 aa14.89□□□□□ -0.03
FOXA1-202ENST00000545425 Q8NBF4 154 aa14.89□□□□□ -0.03
FOXA1-202ENST00000545425 H7BZZ5 65 aa14.89□□□□□ -0.03
FOXA1-202ENST00000545425 SPRR4Q96PI1 79 aa14.89□□□□□ -0.03
FOXA1-202ENST00000545425 ATP5EP56381 51 aaPredicted RBP14.88□□□□□ -0.03
FOXA1-202ENST00000545425 C1orf137Q5JT78 98 aa14.88□□□□□ -0.03
FOXA1-202ENST00000545425 REG3GQ6UW15 175 aa14.88□□□□□ -0.03
FOXA1-202ENST00000545425 FAM168BA1KXE4 195 aa14.87□□□□□ -0.03
FOXA1-202ENST00000545425 CNBPP62633 177 aaKnown RBP14.87□□□□□ -0.03
FOXA1-202ENST00000545425 FAM19A5Q7Z5A7 132 aaPredicted RBP14.87□□□□□ -0.03
FOXA1-202ENST00000545425 KRTAP7-1Q8IUC3 87 aa14.87□□□□□ -0.03
FOXA1-202ENST00000545425 C14orf177Q52M58 125 aa14.85□□□□□ -0.03
FOXA1-202ENST00000545425 PKIGQ9Y2B9 76 aa14.85□□□□□ -0.03
FOXA1-202ENST00000545425 KMT2CQ8NEZ4 4911 aaKnown RBP14.85□□□□□ -0.03
FOXA1-202ENST00000545425 A0A1W2PNM2 257 aa14.83□□□□□ -0.04
FOXA1-202ENST00000545425 C16orf90A8MZG2 172 aa14.83□□□□□ -0.04
FOXA1-202ENST00000545425 UBE2BP63146 152 aa14.82□□□□□ -0.04
FOXA1-202ENST00000545425 SERP1Q9Y6X1 66 aa14.82□□□□□ -0.04
FOXA1-202ENST00000545425 DNAH7Q8WXX0 4024 aa14.81□□□□□ -0.04
FOXA1-202ENST00000545425 F8WEM9 126 aa14.8□□□□□ -0.04
FOXA1-202ENST00000545425 EPM2AB3EWF7 344 aa14.78□□□□□ -0.04
FOXA1-202ENST00000545425 OCR1Q9BZK8 76 aa14.78□□□□□ -0.04
FOXA1-202ENST00000545425 ST20-AS1Q8NBB2 130 aa14.78□□□□□ -0.04
FOXA1-202ENST00000545425 TMEM254Q8TBM7 123 aa14.76□□□□□ -0.05
FOXA1-202ENST00000545425 IGLV8-61A0A075B6I0 122 aa14.76□□□□□ -0.05
FOXA1-202ENST00000545425 SMIM29Q86T20 159 aa14.73□□□□□ -0.05
FOXA1-202ENST00000545425 SNURFQ9Y675 71 aa14.72□□□□□ -0.05
FOXA1-202ENST00000545425 H0Y9J4 135 aa14.71□□□□□ -0.05
FOXA1-202ENST00000545425 PSCAO43653 123 aa14.71□□□□□ -0.05
FOXA1-202ENST00000545425 Q8N9L7 120 aa14.71□□□□□ -0.05
FOXA1-202ENST00000545425 A0A096LNI7 61 aa14.7□□□□□ -0.06
FOXA1-202ENST00000545425 LCE6AA0A183 80 aa14.69□□□□□ -0.06
FOXA1-202ENST00000545425 OXTP01178 125 aa14.69□□□□□ -0.06
FOXA1-202ENST00000545425 CSMD3Q7Z407 3707 aa14.69□□□□□ -0.06
FOXA1-202ENST00000545425 UBE2DNLQ8IWF7 75 aa14.69□□□□□ -0.06
FOXA1-202ENST00000545425 DNAH1Q9P2D7 4330 aa14.68□□□□□ -0.06
FOXA1-202ENST00000545425 A0A0U1RQV1 116 aa14.68□□□□□ -0.06
FOXA1-202ENST00000545425 LINC00476Q8WZB0 136 aa14.68□□□□□ -0.06
FOXA1-202ENST00000545425 TENM2Q9NT68 2774 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms