RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 PLA2G2DQ9UNK4 145 aa11.71□□□□□ -0.54
VIM-209ENST00000544301 C3orf22Q8N5N4 141 aa11.7□□□□□ -0.54
VIM-209ENST00000544301 TRBV7-4A0A0J9YYF1 115 aa11.69□□□□□ -0.54
VIM-209ENST00000544301 UQCRQO14949 82 aa11.68□□□□□ -0.54
VIM-209ENST00000544301 FAM168BA1KXE4 195 aa11.66□□□□□ -0.54
VIM-209ENST00000544301 COX7CP15954 63 aa11.66□□□□□ -0.54
VIM-209ENST00000544301 MGAM2Q2M2H8 2515 aa11.66□□□□□ -0.54
VIM-209ENST00000544301 IGLV5-37A0A075B6J1 123 aa11.65□□□□□ -0.54
VIM-209ENST00000544301 FAM19A1Q7Z5A9 133 aa11.65□□□□□ -0.54
VIM-209ENST00000544301 C9orf153Q5TBE3 101 aa11.64□□□□□ -0.55
VIM-209ENST00000544301 Q6ZVQ6 151 aa11.64□□□□□ -0.55
VIM-209ENST00000544301 RPL37AP8A6NKH3 93 aa11.63□□□□□ -0.55
VIM-209ENST00000544301 KRTAP7-1Q8IUC3 87 aa11.63□□□□□ -0.55
VIM-209ENST00000544301 COL7A1Q02388 2944 aa11.62□□□□□ -0.55
VIM-209ENST00000544301 IGLV1-50A0A075B6I6 118 aa11.62□□□□□ -0.55
VIM-209ENST00000544301 LINC01547P58512 204 aaPredicted RBP11.61□□□□□ -0.55
VIM-209ENST00000544301 PRYO14603 147 aa11.6□□□□□ -0.55
VIM-209ENST00000544301 LYSTQ99698 3801 aa11.6□□□□□ -0.55
VIM-209ENST00000544301 KRTAP4-16G5E9R7 235 aaPredicted RBP11.6□□□□□ -0.55
VIM-209ENST00000544301 LOC107984640A0A0U1RRK4 108 aa11.59□□□□□ -0.55
VIM-209ENST00000544301 HAMPP81172 84 aa11.59□□□□□ -0.55
VIM-209ENST00000544301 DNAH9Q9NYC9 4486 aa11.59□□□□□ -0.55
VIM-209ENST00000544301 SPRR1AP35321 89 aa11.59□□□□□ -0.55
VIM-209ENST00000544301 Q6ZRX8 168 aa11.59□□□□□ -0.55
VIM-209ENST00000544301 SERP2Q8N6R1 65 aa11.59□□□□□ -0.55
VIM-209ENST00000544301 KRTAP1-5Q9BYS1 174 aa11.59□□□□□ -0.55
VIM-209ENST00000544301 STAB2Q8WWQ8 2551 aa11.58□□□□□ -0.56
VIM-209ENST00000544301 DHRS4-AS1Q9P1J3 65 aa11.58□□□□□ -0.56
VIM-209ENST00000544301 Q8N377 158 aa11.57□□□□□ -0.56
VIM-209ENST00000544301 DEFB105AQ8NG35 78 aa11.57□□□□□ -0.56
VIM-209ENST00000544301 DNAH10Q8IVF4 4471 aa11.57□□□□□ -0.56
VIM-209ENST00000544301 FAM19A5Q7Z5A7 132 aaPredicted RBP11.57□□□□□ -0.56
VIM-209ENST00000544301 Q9BRP9 147 aa11.57□□□□□ -0.56
VIM-209ENST00000544301 CRYGAP11844 174 aa11.56□□□□□ -0.56
VIM-209ENST00000544301 MRPL55Q7Z7F7 128 aaKnown RBP11.56□□□□□ -0.56
VIM-209ENST00000544301 ETDCA0A1B0GVM5 59 aa11.56□□□□□ -0.56
VIM-209ENST00000544301 DYNC2H1Q8NCM8 4307 aaKnown RBP11.55□□□□□ -0.56
VIM-209ENST00000544301 CXCL6P80162 114 aa11.55□□□□□ -0.56
VIM-209ENST00000544301 APLNQ9ULZ1 77 aa11.53□□□□□ -0.56
VIM-209ENST00000544301 IGLV5-48A0A075B6I7 105 aa11.5□□□□□ -0.57
VIM-209ENST00000544301 UBE2DNLQ8IWF7 75 aa11.5□□□□□ -0.57
VIM-209ENST00000544301 CNBPP62633 177 aaKnown RBP11.49□□□□□ -0.57
VIM-209ENST00000544301 ST20-AS1Q8NBB2 130 aa11.49□□□□□ -0.57
VIM-209ENST00000544301 PSCAO43653 123 aa11.48□□□□□ -0.57
VIM-209ENST00000544301 MDFIQ99750 246 aa11.48□□□□□ -0.57
VIM-209ENST00000544301 A0A096LNI7 61 aa11.48□□□□□ -0.57
VIM-209ENST00000544301 SCXQ7RTU7 201 aa11.48□□□□□ -0.57
VIM-209ENST00000544301 CYSTM1Q9H1C7 97 aa11.48□□□□□ -0.57
VIM-209ENST00000544301 B9D2Q9BPU9 175 aa11.47□□□□□ -0.57
VIM-209ENST00000544301 ERC2-IT1O76042 136 aa11.47□□□□□ -0.57
VIM-209ENST00000544301 REG3GQ6UW15 175 aa11.47□□□□□ -0.57
VIM-209ENST00000544301 C16orf90A8MZG2 172 aa11.46□□□□□ -0.57
VIM-209ENST00000544301 CSMD3Q7Z407 3707 aa11.46□□□□□ -0.58
VIM-209ENST00000544301 DNAH7Q8WXX0 4024 aa11.45□□□□□ -0.58
VIM-209ENST00000544301 UBE2BP63146 152 aa11.45□□□□□ -0.58
VIM-209ENST00000544301 IGKV2-24A0A0C4DH68 120 aa11.44□□□□□ -0.58
VIM-209ENST00000544301 BCE1O60756 84 aa11.44□□□□□ -0.58
VIM-209ENST00000544301 TNP2Q05952 138 aa11.44□□□□□ -0.58
VIM-209ENST00000544301 A0A1W2PNN7 141 aa11.43□□□□□ -0.58
VIM-209ENST00000544301 NREPQ16612 68 aa11.43□□□□□ -0.58
VIM-209ENST00000544301 C3orf84H3BNL1 204 aa11.42□□□□□ -0.58
VIM-209ENST00000544301 PLECQ15149 4684 aaKnown RBP11.42□□□□□ -0.58
VIM-209ENST00000544301 TENM2Q9NT68 2774 aa11.41□□□□□ -0.58
VIM-209ENST00000544301 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.41□□□□□ -0.58
VIM-209ENST00000544301 C14orf177Q52M58 125 aa11.4□□□□□ -0.58
VIM-209ENST00000544301 C1orf137Q5JT78 98 aa11.4□□□□□ -0.58
VIM-209ENST00000544301 SMIM20Q8N5G0 67 aa11.4□□□□□ -0.58
VIM-209ENST00000544301 A0A1W2PNM2 257 aa11.39□□□□□ -0.59
VIM-209ENST00000544301 TRAV7A0A075B6U4 112 aa11.39□□□□□ -0.59
VIM-209ENST00000544301 FUSP35637 526 aaKnown RBP eCLIP11.38□□□□□ -0.59
VIM-209ENST00000544301 A0A1B0GW54 56 aa11.37□□□□□ -0.59
VIM-209ENST00000544301 SMIM29Q86T20 159 aa11.36□□□□□ -0.59
VIM-209ENST00000544301 Q8N9L7 120 aa11.36□□□□□ -0.59
VIM-209ENST00000544301 Q8NBF4 154 aa11.35□□□□□ -0.59
VIM-209ENST00000544301 BPY2O14599 106 aa11.35□□□□□ -0.59
VIM-209ENST00000544301 IGKV4-1P06312 121 aa11.35□□□□□ -0.59
VIM-209ENST00000544301 NBDYA0A0U1RRE5 68 aa11.34□□□□□ -0.59
VIM-209ENST00000544301 CHTF8P0CG12 524 aa11.34□□□□□ -0.59
VIM-209ENST00000544301 PRLHP81277 87 aa11.34□□□□□ -0.59
VIM-209ENST00000544301 LRCOL1A6NCL2 159 aa11.33□□□□□ -0.6
VIM-209ENST00000544301 TMEM258P61165 79 aa11.33□□□□□ -0.6
VIM-209ENST00000544301 C20orf197Q8N268 126 aa11.33□□□□□ -0.6
VIM-209ENST00000544301 NUPR2A6NF83 97 aa11.33□□□□□ -0.6
VIM-209ENST00000544301 SPRR4Q96PI1 79 aa11.32□□□□□ -0.6
VIM-209ENST00000544301 PHF5AQ7RTV0 110 aaKnown RBP11.31□□□□□ -0.6
VIM-209ENST00000544301 C9orf163Q8N9P6 203 aa11.31□□□□□ -0.6
VIM-209ENST00000544301 KRTAP11-1Q8IUC1 163 aa11.3□□□□□ -0.6
VIM-209ENST00000544301 LINC00476Q8WZB0 136 aa11.29□□□□□ -0.6
VIM-209ENST00000544301 Q6ZRN7 208 aaPredicted RBP11.29□□□□□ -0.6
VIM-209ENST00000544301 F8WEM9 126 aa11.28□□□□□ -0.6
VIM-209ENST00000544301 HIGD2AQ9BW72 106 aa11.28□□□□□ -0.6
VIM-209ENST00000544301 STARD9Q9P2P6 4700 aa11.26□□□□□ -0.61
VIM-209ENST00000544301 VPS13DQ5THJ4 4388 aa11.26□□□□□ -0.61
VIM-209ENST00000544301 PKIGQ9Y2B9 76 aa11.25□□□□□ -0.61
VIM-209ENST00000544301 IGFL1Q6UW32 110 aa11.24□□□□□ -0.61
VIM-209ENST00000544301 A0A0G2JQZ4 141 aa11.24□□□□□ -0.61
VIM-209ENST00000544301 EPM2AB3EWF7 344 aa11.23□□□□□ -0.61
VIM-209ENST00000544301 KLKP1Q107X0 134 aa11.23□□□□□ -0.61
VIM-209ENST00000544301 IGLV8-61A0A075B6I0 122 aa11.23□□□□□ -0.61
VIM-209ENST00000544301 H0Y9J4 135 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms