RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	KCNQ1DN	Q9H478	68 aa		6.26	□□□□□ -1.41
CPSF7-221	ENST00000543545	ETDC	A0A1B0GVM5	59 aa		6.25	□□□□□ -1.41
CPSF7-221	ENST00000543545	IGLV7-43	P04211	117 aa		6.25	□□□□□ -1.41
CPSF7-221	ENST00000543545	HINT1	P49773	126 aa	Predicted RBP	6.25	□□□□□ -1.41
CPSF7-221	ENST00000543545	FXYD2	P54710	66 aa		6.25	□□□□□ -1.41
CPSF7-221	ENST00000543545	VPS13B	Q7Z7G8	4022 aa		6.24	□□□□□ -1.41
CPSF7-221	ENST00000543545		H7C2G1	150 aa		6.24	□□□□□ -1.41
CPSF7-221	ENST00000543545	ZNF73	O43830	326 aa	Predicted RBP	6.24	□□□□□ -1.41
CPSF7-221	ENST00000543545	CFC1B	P0CG36	223 aa		6.24	□□□□□ -1.41
CPSF7-221	ENST00000543545	CFC1	P0CG37	223 aa		6.24	□□□□□ -1.41
CPSF7-221	ENST00000543545	RPL13A	P40429	203 aa	Known RBP	6.24	□□□□□ -1.41
CPSF7-221	ENST00000543545	RPL28	P46779	137 aa	Known RBP	6.24	□□□□□ -1.41
CPSF7-221	ENST00000543545	PRLH	P81277	87 aa		6.23	□□□□□ -1.41
CPSF7-221	ENST00000543545	BVES-AS1	Q5T3Y7	98 aa		6.23	□□□□□ -1.41
CPSF7-221	ENST00000543545	DIRC1	Q969H9	104 aa		6.23	□□□□□ -1.41
CPSF7-221	ENST00000543545	NHP2	Q9NX24	153 aa	Known RBP	6.23	□□□□□ -1.41
CPSF7-221	ENST00000543545		A0A0B4J2C4	111 aa		6.22	□□□□□ -1.41
CPSF7-221	ENST00000543545		M0R143	59 aa		6.22	□□□□□ -1.41
CPSF7-221	ENST00000543545	ZNF861P	O60384	105 aa		6.22	□□□□□ -1.41
CPSF7-221	ENST00000543545	KRTAP10-4	P60372	401 aa	Predicted RBP	6.22	□□□□□ -1.41
CPSF7-221	ENST00000543545	INAFM2	P0DMQ5	153 aa		6.21	□□□□□ -1.42
CPSF7-221	ENST00000543545	SPRR1A	P35321	89 aa		6.21	□□□□□ -1.42
CPSF7-221	ENST00000543545		Q1RN00	199 aa		6.21	□□□□□ -1.42
CPSF7-221	ENST00000543545	C6orf99	Q4VX62	202 aa		6.21	□□□□□ -1.42
CPSF7-221	ENST00000543545	SPINK6	Q6UWN8	80 aa		6.21	□□□□□ -1.42
CPSF7-221	ENST00000543545	SMIM11B	Q8TCY0	68 aa		6.21	□□□□□ -1.42
CPSF7-221	ENST00000543545	KRTAP4-5	Q9BYR2	181 aa		6.21	□□□□□ -1.42
CPSF7-221	ENST00000543545	PRO1854	Q9UHT4	67 aa		6.21	□□□□□ -1.42
CPSF7-221	ENST00000543545		K7ERJ3	54 aa		6.2	□□□□□ -1.42
CPSF7-221	ENST00000543545	COX7B	P24311	80 aa		6.2	□□□□□ -1.42
CPSF7-221	ENST00000543545	VAMP3	Q15836	100 aa		6.2	□□□□□ -1.42
CPSF7-221	ENST00000543545	BATF	Q16520	125 aa		6.2	□□□□□ -1.42
CPSF7-221	ENST00000543545	HIGD2A	Q9BW72	106 aa		6.2	□□□□□ -1.42
CPSF7-221	ENST00000543545		B5MCH6	92 aa		6.19	□□□□□ -1.42
CPSF7-221	ENST00000543545	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	6.18	□□□□□ -1.42
CPSF7-221	ENST00000543545	PCP4L1	A6NKN8	68 aa		6.17	□□□□□ -1.42
CPSF7-221	ENST00000543545		H0Y9J4	135 aa		6.17	□□□□□ -1.42
CPSF7-221	ENST00000543545		Q6ZRX8	168 aa		6.17	□□□□□ -1.42
CPSF7-221	ENST00000543545	KRTAP13-1	Q8IUC0	172 aa		6.17	□□□□□ -1.42
CPSF7-221	ENST00000543545	SMCR5	Q8TEV8	140 aa		6.17	□□□□□ -1.42
CPSF7-221	ENST00000543545	ABCA13	Q86UQ4	5058 aa		6.16	□□□□□ -1.42
CPSF7-221	ENST00000543545	TRBV7-6	A0A0J9YX20	115 aa		6.16	□□□□□ -1.42
CPSF7-221	ENST00000543545		A0A1B0GWB2	263 aa		6.16	□□□□□ -1.42
CPSF7-221	ENST00000543545	PSMB2	P49721	201 aa		6.16	□□□□□ -1.42
CPSF7-221	ENST00000543545	SLC25A20	O43772	301 aa		6.15	□□□□□ -1.42
CPSF7-221	ENST00000543545	ELOF1	P60002	83 aa	Known RBP	6.15	□□□□□ -1.42
CPSF7-221	ENST00000543545	DHRS4-AS1	Q9P1J3	65 aa		6.15	□□□□□ -1.42
CPSF7-221	ENST00000543545		Q9BRP9	147 aa		6.14	□□□□□ -1.43
CPSF7-221	ENST00000543545	ERC2-IT1	O76042	136 aa		6.13	□□□□□ -1.43
CPSF7-221	ENST00000543545	TSPAN13	O95857	204 aa		6.13	□□□□□ -1.43
CPSF7-221	ENST00000543545	SCGB1C2	P0DMR2	95 aa		6.13	□□□□□ -1.43
CPSF7-221	ENST00000543545	ZNF706	Q9Y5V0	76 aa	Predicted RBP	6.13	□□□□□ -1.43
CPSF7-221	ENST00000543545	SRRM2	Q9UQ35	2752 aa	Known RBP	6.13	□□□□□ -1.43
CPSF7-221	ENST00000543545		H0YGX0	51 aa		6.12	□□□□□ -1.43
CPSF7-221	ENST00000543545	SNCG	O76070	127 aa		6.12	□□□□□ -1.43
CPSF7-221	ENST00000543545	COX6C	P09669	75 aa		6.12	□□□□□ -1.43
CPSF7-221	ENST00000543545	TRIAP1	O43715	76 aa		6.11	□□□□□ -1.43
CPSF7-221	ENST00000543545	GAGE2A	Q6NT46	116 aa		6.11	□□□□□ -1.43
CPSF7-221	ENST00000543545	LINC00575	Q6W349	94 aa		6.11	□□□□□ -1.43
CPSF7-221	ENST00000543545	PKHD1L1	Q86WI1	4243 aa		6.11	□□□□□ -1.43
CPSF7-221	ENST00000543545	hADV29S1	A0JD25	119 aa		6.1	□□□□□ -1.43
CPSF7-221	ENST00000543545	ST20-AS1	Q8NBB2	130 aa		6.1	□□□□□ -1.43
CPSF7-221	ENST00000543545	DEFB105A	Q8NG35	78 aa		6.1	□□□□□ -1.43
CPSF7-221	ENST00000543545	SPRR4	Q96PI1	79 aa		6.1	□□□□□ -1.43
CPSF7-221	ENST00000543545	ANAPC11	Q9NYG5	84 aa		6.1	□□□□□ -1.43
CPSF7-221	ENST00000543545	FLG2	Q5D862	2391 aa	Predicted RBP	6.1	□□□□□ -1.43
CPSF7-221	ENST00000543545	NAA38	Q9BRA0	125 aa	Known RBP	6.09	□□□□□ -1.43
CPSF7-221	ENST00000543545	SNHG12	Q9BXW3	62 aa		6.09	□□□□□ -1.43
CPSF7-221	ENST00000543545	CLEC2B	Q92478	149 aa		6.08	□□□□□ -1.44
CPSF7-221	ENST00000543545	OXT	P01178	125 aa		6.07	□□□□□ -1.44
CPSF7-221	ENST00000543545	KRTAP1-4	P0C5Y4	121 aa		6.07	□□□□□ -1.44
CPSF7-221	ENST00000543545	CRYGA	P11844	174 aa		6.07	□□□□□ -1.44
CPSF7-221	ENST00000543545	PRR26	Q8N8Z3	221 aa		6.07	□□□□□ -1.44
CPSF7-221	ENST00000543545	PCLO	Q9Y6V0	5065 aa		6.06	□□□□□ -1.44
CPSF7-221	ENST00000543545		H3BUT2	72 aa		6.06	□□□□□ -1.44
CPSF7-221	ENST00000543545		J3QL48	77 aa		6.06	□□□□□ -1.44
CPSF7-221	ENST00000543545	COL5A1-AS1	Q5SY13	56 aa		6.06	□□□□□ -1.44
CPSF7-221	ENST00000543545	LINC01600	Q96MT4	127 aa		6.06	□□□□□ -1.44
CPSF7-221	ENST00000543545	FAM218A	Q96MZ4	157 aa		6.06	□□□□□ -1.44
CPSF7-221	ENST00000543545	TEX49	A0A1B0GTD5	131 aa		6.05	□□□□□ -1.44
CPSF7-221	ENST00000543545	DNAL4	O96015	105 aa		6.05	□□□□□ -1.44
CPSF7-221	ENST00000543545	FAM229B	Q4G0N7	80 aa		6.05	□□□□□ -1.44
CPSF7-221	ENST00000543545	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	6.05	□□□□□ -1.44
CPSF7-221	ENST00000543545		Q6ZQY7	126 aa		6.05	□□□□□ -1.44
CPSF7-221	ENST00000543545		A0A1B0GX51	115 aa		6.04	□□□□□ -1.44
CPSF7-221	ENST00000543545	C9orf118	A6NHY6	69 aa		6.04	□□□□□ -1.44
CPSF7-221	ENST00000543545	KRTAP29-1	A8MX34	341 aa	Predicted RBP	6.04	□□□□□ -1.44
CPSF7-221	ENST00000543545	TAX1BP3	O14907	124 aa		6.04	□□□□□ -1.44
CPSF7-221	ENST00000543545	LINC00483	Q53H64	154 aa		6.04	□□□□□ -1.44
CPSF7-221	ENST00000543545	LAMTOR3	Q9UHA4	124 aa		6.04	□□□□□ -1.44
CPSF7-221	ENST00000543545	FAT3	Q8TDW7	4589 aa		6.03	□□□□□ -1.44
CPSF7-221	ENST00000543545		A0A087X002	238 aa		6.03	□□□□□ -1.44
CPSF7-221	ENST00000543545	IGLV9-49	A0A0B4J1Y8	123 aa		6.03	□□□□□ -1.44
CPSF7-221	ENST00000543545	LYRM7	Q5U5X0	104 aa		6.03	□□□□□ -1.44
CPSF7-221	ENST00000543545	TYMSOS	Q8TAI1	123 aa		6.03	□□□□□ -1.44
CPSF7-221	ENST00000543545	GHRH	P01286	108 aa		6.02	□□□□□ -1.45
CPSF7-221	ENST00000543545	MYCBP2	O75592	4640 aa		6.02	□□□□□ -1.45
CPSF7-221	ENST00000543545	LRP1	Q07954	4544 aa	Known RBP	6.01	□□□□□ -1.45
CPSF7-221	ENST00000543545	IGLV5-48	A0A075B6I7	105 aa		6.01	□□□□□ -1.45
CPSF7-221	ENST00000543545	FABP2	P12104	132 aa		6.01	□□□□□ -1.45

Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms