RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 Q6Q795 121 aa3.27□□□□□ -1.89
CLIP1-217ENST00000543205 CAMK2N2Q96S95 79 aa3.27□□□□□ -1.89
CLIP1-217ENST00000543205 TP73-AS1Q9UF72 201 aa3.27□□□□□ -1.89
CLIP1-217ENST00000543205 DNAH2Q9P225 4427 aa3.26□□□□□ -1.89
CLIP1-217ENST00000543205 DNAH17Q9UFH2 4485 aa3.26□□□□□ -1.89
CLIP1-217ENST00000543205 F8VRH5 84 aa3.26□□□□□ -1.89
CLIP1-217ENST00000543205 TMEM170BQ5T4T1 132 aa3.26□□□□□ -1.89
CLIP1-217ENST00000543205 C9orf163Q8N9P6 203 aa3.26□□□□□ -1.89
CLIP1-217ENST00000543205 SPANXCQ9NY87 97 aa3.26□□□□□ -1.89
CLIP1-217ENST00000543205 TOMM7Q9P0U1 55 aa3.26□□□□□ -1.89
CLIP1-217ENST00000543205 DMBT1Q9UGM3 2413 aaPredicted RBP3.26□□□□□ -1.89
CLIP1-217ENST00000543205 C11orf86A6NJI1 115 aa3.26□□□□□ -1.89
CLIP1-217ENST00000543205 NDUFA1O15239 70 aa3.26□□□□□ -1.89
CLIP1-217ENST00000543205 SPINK8P0C7L1 97 aa3.26□□□□□ -1.89
CLIP1-217ENST00000543205 ZNF22P17026 224 aaPredicted RBP3.26□□□□□ -1.89
CLIP1-217ENST00000543205 MRPL35Q9NZE8 188 aaKnown RBP3.26□□□□□ -1.89
CLIP1-217ENST00000543205 PLNP26678 52 aa3.25□□□□□ -1.89
CLIP1-217ENST00000543205 Q8IZM0 81 aa3.25□□□□□ -1.89
CLIP1-217ENST00000543205 COX7B2Q8TF08 81 aa3.25□□□□□ -1.89
CLIP1-217ENST00000543205 DPH3Q96FX2 82 aa3.25□□□□□ -1.89
CLIP1-217ENST00000543205 FAT2Q9NYQ8 4349 aa3.25□□□□□ -1.89
CLIP1-217ENST00000543205 IGLV7-46A0A075B6I9 117 aa3.24□□□□□ -1.89
CLIP1-217ENST00000543205 SYS1-DBNDD2H3BUS1 97 aa3.24□□□□□ -1.89
CLIP1-217ENST00000543205 CXCL5P42830 114 aa3.24□□□□□ -1.89
CLIP1-217ENST00000543205 UNQ6190/PRO20217Q6UXQ8 127 aa3.24□□□□□ -1.89
CLIP1-217ENST00000543205 SDIM1Q6ZPB5 146 aa3.24□□□□□ -1.89
CLIP1-217ENST00000543205 Q8N377 158 aa3.24□□□□□ -1.89
CLIP1-217ENST00000543205 C8orf17Q9NRJ1 99 aa3.24□□□□□ -1.89
CLIP1-217ENST00000543205 TRBV30A0A0K0K1B3 111 aa3.24□□□□□ -1.89
CLIP1-217ENST00000543205 DPM2O94777 84 aa3.24□□□□□ -1.89
CLIP1-217ENST00000543205 IGKCP01834 107 aa3.24□□□□□ -1.89
CLIP1-217ENST00000543205 KRTDAPP60985 99 aa3.24□□□□□ -1.89
CLIP1-217ENST00000543205 LYRM7Q5U5X0 104 aa3.24□□□□□ -1.89
CLIP1-217ENST00000543205 C2orf82Q6UX34 121 aa3.24□□□□□ -1.89
CLIP1-217ENST00000543205 PMCHL2Q9BQD1 86 aa3.24□□□□□ -1.89
CLIP1-217ENST00000543205 NAA38Q9BRA0 125 aaKnown RBP3.24□□□□□ -1.89
CLIP1-217ENST00000543205 PKHD1P08F94 4074 aa3.23□□□□□ -1.89
CLIP1-217ENST00000543205 TMEM223A0PJW6 202 aa3.23□□□□□ -1.89
CLIP1-217ENST00000543205 C20orf202A1L168 122 aa3.23□□□□□ -1.89
CLIP1-217ENST00000543205 J3QQQ9 107 aa3.23□□□□□ -1.89
CLIP1-217ENST00000543205 HIST3H2BBQ8N257 126 aa3.23□□□□□ -1.89
CLIP1-217ENST00000543205 LINC00474Q9P2X8 69 aa3.23□□□□□ -1.89
CLIP1-217ENST00000543205 C6orf48Q9UBA6 75 aa3.23□□□□□ -1.89
CLIP1-217ENST00000543205 HERC1Q15751 4861 aa3.23□□□□□ -1.89
CLIP1-217ENST00000543205 PKD1P98161 4303 aa3.23□□□□□ -1.89
CLIP1-217ENST00000543205 IGKV2-24A0A0C4DH68 120 aa3.22□□□□□ -1.89
CLIP1-217ENST00000543205 C3orf79P0CE67 100 aa3.22□□□□□ -1.89
CLIP1-217ENST00000543205 Q6ZSA8 131 aa3.22□□□□□ -1.89
CLIP1-217ENST00000543205 CEND1Q8N111 149 aa3.22□□□□□ -1.89
CLIP1-217ENST00000543205 LITAFQ99732 161 aa3.22□□□□□ -1.89
CLIP1-217ENST00000543205 A0A096LNI7 61 aa3.22□□□□□ -1.89
CLIP1-217ENST00000543205 HAMPP81172 84 aa3.22□□□□□ -1.89
CLIP1-217ENST00000543205 C9orf116Q5BN46 136 aaPredicted RBP3.22□□□□□ -1.89
CLIP1-217ENST00000543205 LINC01545Q5VT33 79 aa3.22□□□□□ -1.89
CLIP1-217ENST00000543205 KTN1-AS1Q86SY8 53 aa3.22□□□□□ -1.89
CLIP1-217ENST00000543205 HIST1H2BLQ99880 126 aa3.22□□□□□ -1.89
CLIP1-217ENST00000543205 TLX1NBP0CAT3 122 aa3.21□□□□□ -1.9
CLIP1-217ENST00000543205 NMUP48645 174 aa3.21□□□□□ -1.9
CLIP1-217ENST00000543205 SFTA2Q6UW10 78 aa3.21□□□□□ -1.9
CLIP1-217ENST00000543205 SCXQ7RTU7 201 aa3.21□□□□□ -1.9
CLIP1-217ENST00000543205 SPACA4Q8TDM5 124 aa3.21□□□□□ -1.9
CLIP1-217ENST00000543205 PANO1I0J062 215 aa3.2□□□□□ -1.9
CLIP1-217ENST00000543205 LEPROTO15243 131 aa3.2□□□□□ -1.9
CLIP1-217ENST00000543205 ZNF73O43830 326 aaPredicted RBP3.2□□□□□ -1.9
CLIP1-217ENST00000543205 LGALS3P17931 250 aaKnown RBP3.2□□□□□ -1.9
CLIP1-217ENST00000543205 CIRBPQ14011 172 aaKnown RBP3.2□□□□□ -1.9
CLIP1-217ENST00000543205 CIRBP-AS1Q8TBR5 109 aa3.2□□□□□ -1.9
CLIP1-217ENST00000543205 DNAH11Q96DT5 4516 aa3.2□□□□□ -1.9
CLIP1-217ENST00000543205 UBR4Q5T4S7 5183 aa3.2□□□□□ -1.9
CLIP1-217ENST00000543205 A0A087WYN8 130 aa3.2□□□□□ -1.9
CLIP1-217ENST00000543205 MYMXA0A1B0GTQ4 84 aa3.2□□□□□ -1.9
CLIP1-217ENST00000543205 SMR3BP02814 79 aaPredicted RBP3.2□□□□□ -1.9
CLIP1-217ENST00000543205 ADM2Q7Z4H4 148 aa3.2□□□□□ -1.9
CLIP1-217ENST00000543205 ZNF625Q96I27 306 aaPredicted RBP3.2□□□□□ -1.9
CLIP1-217ENST00000543205 NDUFA12Q9UI09 145 aa3.2□□□□□ -1.9
CLIP1-217ENST00000543205 COX17Q14061 63 aa3.19□□□□□ -1.9
CLIP1-217ENST00000543205 PRR15Q8IV56 129 aa3.19□□□□□ -1.9
CLIP1-217ENST00000543205 IMUPQ9GZP8 106 aa3.19□□□□□ -1.9
CLIP1-217ENST00000543205 PLAC8Q9NZF1 115 aa3.19□□□□□ -1.9
CLIP1-217ENST00000543205 SRRM2Q9UQ35 2752 aaKnown RBP3.19□□□□□ -1.9
CLIP1-217ENST00000543205 TAX1BP3O14907 124 aa3.19□□□□□ -1.9
CLIP1-217ENST00000543205 LINC00158P58513 81 aa3.19□□□□□ -1.9
CLIP1-217ENST00000543205 TSPEAR-AS2P59090 65 aa3.19□□□□□ -1.9
CLIP1-217ENST00000543205 LUZP6Q538Z0 58 aa3.19□□□□□ -1.9
CLIP1-217ENST00000543205 MEIG1Q5JSS6 88 aa3.19□□□□□ -1.9
CLIP1-217ENST00000543205 LCE1AQ5T7P2 110 aa3.19□□□□□ -1.9
CLIP1-217ENST00000543205 ATOH7Q8N100 152 aa3.19□□□□□ -1.9
CLIP1-217ENST00000543205 A0A1W2PNN7 141 aa3.18□□□□□ -1.9
CLIP1-217ENST00000543205 M0R378 163 aa3.18□□□□□ -1.9
CLIP1-217ENST00000543205 C9orf129Q5T035 196 aaKnown RBP3.18□□□□□ -1.9
CLIP1-217ENST00000543205 XAGE1AQ9HD64 81 aa3.18□□□□□ -1.9
CLIP1-217ENST00000543205 DYNC1H1Q14204 4646 aaKnown RBP3.17□□□□□ -1.9
CLIP1-217ENST00000543205 A0A1B0GVX0 72 aa3.17□□□□□ -1.9
CLIP1-217ENST00000543205 FAM168BA1KXE4 195 aa3.17□□□□□ -1.9
CLIP1-217ENST00000543205 SMIM13P0DJ93 91 aa3.17□□□□□ -1.9
CLIP1-217ENST00000543205 LCA10Q71F78 164 aa3.17□□□□□ -1.9
CLIP1-217ENST00000543205 CAMK2N1Q7Z7J9 78 aa3.17□□□□□ -1.9
CLIP1-217ENST00000543205 LAMTOR3Q9UHA4 124 aa3.17□□□□□ -1.9
CLIP1-217ENST00000543205 DNAH5Q8TE73 4624 aa3.17□□□□□ -1.9
CLIP1-217ENST00000543205 Q5VSD8 79 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms