RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 FP248Q71RG6 208 aaPredicted RBP6.49□□□□□ -1.37
SS18-205ENST00000542420 XAGE1AQ9HD64 81 aa6.48□□□□□ -1.37
SS18-205ENST00000542420 PKIGQ9Y2B9 76 aa6.48□□□□□ -1.37
SS18-205ENST00000542420 SERP1Q9Y6X1 66 aa6.48□□□□□ -1.37
SS18-205ENST00000542420 TRRAPQ9Y4A5 3859 aa6.48□□□□□ -1.37
SS18-205ENST00000542420 FAM236DA0A1B0GTK5 79 aa6.48□□□□□ -1.37
SS18-205ENST00000542420 H7BZZ5 65 aa6.48□□□□□ -1.37
SS18-205ENST00000542420 FAM236CP0DP71 79 aa6.48□□□□□ -1.37
SS18-205ENST00000542420 RBM3P98179 157 aaKnown RBP6.48□□□□□ -1.37
SS18-205ENST00000542420 KCNQ1DNQ9H478 68 aa6.47□□□□□ -1.37
SS18-205ENST00000542420 SEC61GP60059 68 aa6.47□□□□□ -1.37
SS18-205ENST00000542420 Q6ZRP5 223 aa6.47□□□□□ -1.37
SS18-205ENST00000542420 Q6ZQT0 140 aa6.46□□□□□ -1.38
SS18-205ENST00000542420 PRYO14603 147 aa6.45□□□□□ -1.38
SS18-205ENST00000542420 Q6ZQY7 126 aa6.45□□□□□ -1.38
SS18-205ENST00000542420 NKAPP1Q8N9T2 125 aa6.44□□□□□ -1.38
SS18-205ENST00000542420 C20orf197Q8N268 126 aa6.44□□□□□ -1.38
SS18-205ENST00000542420 UBL5Q9BZL1 73 aa6.44□□□□□ -1.38
SS18-205ENST00000542420 TNP2Q05952 138 aa6.43□□□□□ -1.38
SS18-205ENST00000542420 LAMTOR3Q9UHA4 124 aa6.43□□□□□ -1.38
SS18-205ENST00000542420 MAST4O15021 2626 aa6.43□□□□□ -1.38
SS18-205ENST00000542420 TRBV7-4A0A0J9YYF1 115 aa6.43□□□□□ -1.38
SS18-205ENST00000542420 DHRS4-AS1Q9P1J3 65 aa6.42□□□□□ -1.38
SS18-205ENST00000542420 SMIM26A0A096LP01 95 aa6.42□□□□□ -1.38
SS18-205ENST00000542420 A0A1B0GW54 56 aa6.42□□□□□ -1.38
SS18-205ENST00000542420 SPRR1AP35321 89 aa6.42□□□□□ -1.38
SS18-205ENST00000542420 BCE1O60756 84 aa6.41□□□□□ -1.38
SS18-205ENST00000542420 B9D2Q9BPU9 175 aa6.41□□□□□ -1.38
SS18-205ENST00000542420 V9GYY9 64 aa6.41□□□□□ -1.38
SS18-205ENST00000542420 BAHCC1Q9P281 2608 aa6.41□□□□□ -1.38
SS18-205ENST00000542420 KLKP1Q107X0 134 aa6.41□□□□□ -1.38
SS18-205ENST00000542420 C14orf177Q52M58 125 aa6.41□□□□□ -1.38
SS18-205ENST00000542420 FAM19A1Q7Z5A9 133 aa6.41□□□□□ -1.38
SS18-205ENST00000542420 C7orf33Q8WU49 177 aa6.41□□□□□ -1.38
SS18-205ENST00000542420 HUWE1Q7Z6Z7 4374 aaKnown RBP6.4□□□□□ -1.38
SS18-205ENST00000542420 CNBPP62633 177 aaKnown RBP6.4□□□□□ -1.38
SS18-205ENST00000542420 STAB1Q9NY15 2570 aa6.39□□□□□ -1.39
SS18-205ENST00000542420 IGLV1-50A0A075B6I6 118 aa6.39□□□□□ -1.39
SS18-205ENST00000542420 C1orf195Q5TG92 126 aa6.39□□□□□ -1.39
SS18-205ENST00000542420 LINC00474Q9P2X8 69 aa6.39□□□□□ -1.39
SS18-205ENST00000542420 TENM3Q9P273 2699 aa6.39□□□□□ -1.39
SS18-205ENST00000542420 DNAH1Q9P2D7 4330 aa6.38□□□□□ -1.39
SS18-205ENST00000542420 KRTAP4-16G5E9R7 235 aaPredicted RBP6.38□□□□□ -1.39
SS18-205ENST00000542420 SERTAD4-AS1Q5TG53 156 aa6.38□□□□□ -1.39
SS18-205ENST00000542420 APLNQ9ULZ1 77 aa6.38□□□□□ -1.39
SS18-205ENST00000542420 CXCL6P80162 114 aa6.38□□□□□ -1.39
SS18-205ENST00000542420 Q6ZRX8 168 aa6.37□□□□□ -1.39
SS18-205ENST00000542420 ANK2Q01484 3957 aa6.37□□□□□ -1.39
SS18-205ENST00000542420 PRB2P02812 416 aaPredicted RBP6.37□□□□□ -1.39
SS18-205ENST00000542420 FBN1P35555 2871 aaKnown RBP6.36□□□□□ -1.39
SS18-205ENST00000542420 TRAV7A0A075B6U4 112 aa6.36□□□□□ -1.39
SS18-205ENST00000542420 IGLV5-48A0A075B6I7 105 aa6.35□□□□□ -1.39
SS18-205ENST00000542420 A0A0U1RQV1 116 aa6.35□□□□□ -1.39
SS18-205ENST00000542420 NUPR2A6NF83 97 aa6.35□□□□□ -1.39
SS18-205ENST00000542420 MRPL55Q7Z7F7 128 aaKnown RBP6.35□□□□□ -1.39
SS18-205ENST00000542420 BRK1Q8WUW1 75 aa6.35□□□□□ -1.39
SS18-205ENST00000542420 ETDCA0A1B0GVM5 59 aa6.34□□□□□ -1.39
SS18-205ENST00000542420 C16orf90A8MZG2 172 aa6.34□□□□□ -1.39
SS18-205ENST00000542420 CASC10Q5T4H9 136 aa6.34□□□□□ -1.39
SS18-205ENST00000542420 Q6ZVQ6 151 aa6.34□□□□□ -1.39
SS18-205ENST00000542420 UBE2DNLQ8IWF7 75 aa6.33□□□□□ -1.4
SS18-205ENST00000542420 DYNC2H1Q8NCM8 4307 aaKnown RBP6.33□□□□□ -1.4
SS18-205ENST00000542420 F8WEM9 126 aa6.33□□□□□ -1.4
SS18-205ENST00000542420 FLNBO75369 2602 aaKnown RBP6.33□□□□□ -1.4
SS18-205ENST00000542420 LINC01547P58512 204 aaPredicted RBP6.32□□□□□ -1.4
SS18-205ENST00000542420 SNURFQ9Y675 71 aa6.32□□□□□ -1.4
SS18-205ENST00000542420 FAM229BQ4G0N7 80 aa6.32□□□□□ -1.4
SS18-205ENST00000542420 KRTAP7-1Q8IUC3 87 aa6.32□□□□□ -1.4
SS18-205ENST00000542420 REG3GQ6UW15 175 aa6.31□□□□□ -1.4
SS18-205ENST00000542420 Q8N377 158 aa6.31□□□□□ -1.4
SS18-205ENST00000542420 PKD1L1Q8TDX9 2849 aa6.3□□□□□ -1.4
SS18-205ENST00000542420 PSCAO43653 123 aa6.3□□□□□ -1.4
SS18-205ENST00000542420 KRTAP1-5Q9BYS1 174 aa6.3□□□□□ -1.4
SS18-205ENST00000542420 Q9BRP9 147 aa6.3□□□□□ -1.4
SS18-205ENST00000542420 H0Y9J4 135 aa6.29□□□□□ -1.4
SS18-205ENST00000542420 DNAH9Q9NYC9 4486 aa6.29□□□□□ -1.4
SS18-205ENST00000542420 FAM168BA1KXE4 195 aa6.28□□□□□ -1.4
SS18-205ENST00000542420 RPL37AP8A6NKH3 93 aa6.28□□□□□ -1.4
SS18-205ENST00000542420 M0R2N4 97 aa6.28□□□□□ -1.4
SS18-205ENST00000542420 COL6A5A8TX70 2615 aa6.28□□□□□ -1.4
SS18-205ENST00000542420 ATP5EP56381 51 aaPredicted RBP6.28□□□□□ -1.4
SS18-205ENST00000542420 NBDYA0A0U1RRE5 68 aa6.27□□□□□ -1.41
SS18-205ENST00000542420 FUSP35637 526 aaKnown RBP eCLIP6.27□□□□□ -1.41
SS18-205ENST00000542420 A0A096LNI7 61 aa6.27□□□□□ -1.41
SS18-205ENST00000542420 NDUFC1O43677 76 aa6.27□□□□□ -1.41
SS18-205ENST00000542420 MDFIQ99750 246 aa6.27□□□□□ -1.41
SS18-205ENST00000542420 C9orf163Q8N9P6 203 aa6.26□□□□□ -1.41
SS18-205ENST00000542420 NOTCH1P46531 2555 aa6.26□□□□□ -1.41
SS18-205ENST00000542420 HAMPP81172 84 aa6.26□□□□□ -1.41
SS18-205ENST00000542420 SPRR4Q96PI1 79 aa6.26□□□□□ -1.41
SS18-205ENST00000542420 IGLV8-61A0A075B6I0 122 aa6.25□□□□□ -1.41
SS18-205ENST00000542420 LRCOL1A6NCL2 159 aa6.25□□□□□ -1.41
SS18-205ENST00000542420 Q8NBF4 154 aa6.25□□□□□ -1.41
SS18-205ENST00000542420 UBE2BP63146 152 aa6.24□□□□□ -1.41
SS18-205ENST00000542420 NREPQ16612 68 aa6.24□□□□□ -1.41
SS18-205ENST00000542420 PRR15Q8IV56 129 aa6.24□□□□□ -1.41
SS18-205ENST00000542420 Q6ZRN7 208 aaPredicted RBP6.24□□□□□ -1.41
SS18-205ENST00000542420 SPRR1BP22528 89 aa6.23□□□□□ -1.41
SS18-205ENST00000542420 C1orf137Q5JT78 98 aa6.23□□□□□ -1.41
SS18-205ENST00000542420 MPLKIPQ8TAP9 179 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms