RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 LOC105371267A0A1B0GV96 52 aa10.76□□□□□ -0.69
CLSTN3-210ENST00000540931 UBE2AP49459 152 aa10.76□□□□□ -0.69
CLSTN3-210ENST00000540931 EIF4EBP3O60516 100 aaPredicted RBP10.75□□□□□ -0.69
CLSTN3-210ENST00000540931 TRAV23DV6A0A075B6W5 121 aa10.74□□□□□ -0.69
CLSTN3-210ENST00000540931 ETDCA0A1B0GVM5 59 aa10.74□□□□□ -0.69
CLSTN3-210ENST00000540931 SPRR1AP35321 89 aa10.74□□□□□ -0.69
CLSTN3-210ENST00000540931 KRTAP11-1Q8IUC1 163 aa10.74□□□□□ -0.69
CLSTN3-210ENST00000540931 C2orf91Q6ZV80 131 aa10.73□□□□□ -0.69
CLSTN3-210ENST00000540931 FAM19A1Q7Z5A9 133 aa10.73□□□□□ -0.69
CLSTN3-210ENST00000540931 A4D1N5 150 aa10.72□□□□□ -0.69
CLSTN3-210ENST00000540931 A6NDN8 102 aa10.72□□□□□ -0.69
CLSTN3-210ENST00000540931 ZNF73O43830 326 aaPredicted RBP10.71□□□□□ -0.69
CLSTN3-210ENST00000540931 HSD52Q0P140 79 aa10.71□□□□□ -0.69
CLSTN3-210ENST00000540931 CEND1Q8N111 149 aa10.71□□□□□ -0.69
CLSTN3-210ENST00000540931 TSTD3H0UI37 97 aa10.7□□□□□ -0.7
CLSTN3-210ENST00000540931 TRBV7-6A0A0J9YX20 115 aa10.69□□□□□ -0.7
CLSTN3-210ENST00000540931 OXTP01178 125 aa10.69□□□□□ -0.7
CLSTN3-210ENST00000540931 C12orf57Q99622 126 aa10.68□□□□□ -0.7
CLSTN3-210ENST00000540931 VAMP3Q15836 100 aa10.67□□□□□ -0.7
CLSTN3-210ENST00000540931 KRTAP13-1Q8IUC0 172 aa10.67□□□□□ -0.7
CLSTN3-210ENST00000540931 RAB37Q96AX2 223 aa10.67□□□□□ -0.7
CLSTN3-210ENST00000540931 A0A0B4J2C4 111 aa10.66□□□□□ -0.7
CLSTN3-210ENST00000540931 KRTAP4-16G5E9R7 235 aaPredicted RBP10.66□□□□□ -0.7
CLSTN3-210ENST00000540931 ZNF706Q9Y5V0 76 aaPredicted RBP10.66□□□□□ -0.7
CLSTN3-210ENST00000540931 J3QL48 77 aa10.65□□□□□ -0.7
CLSTN3-210ENST00000540931 Q6ZRX8 168 aa10.65□□□□□ -0.7
CLSTN3-210ENST00000540931 B5MCH6 92 aa10.64□□□□□ -0.71
CLSTN3-210ENST00000540931 A0A1B0GWB2 263 aa10.63□□□□□ -0.71
CLSTN3-210ENST00000540931 PRLHP81277 87 aa10.63□□□□□ -0.71
CLSTN3-210ENST00000540931 DHRS4-AS1Q9P1J3 65 aa10.63□□□□□ -0.71
CLSTN3-210ENST00000540931 HIGD2AQ9BW72 106 aa10.62□□□□□ -0.71
CLSTN3-210ENST00000540931 NHP2Q9NX24 153 aaKnown RBP10.62□□□□□ -0.71
CLSTN3-210ENST00000540931 KRTAP29-1A8MX34 341 aaPredicted RBP10.61□□□□□ -0.71
CLSTN3-210ENST00000540931 M0R143 59 aa10.61□□□□□ -0.71
CLSTN3-210ENST00000540931 CFC1BP0CG36 223 aa10.61□□□□□ -0.71
CLSTN3-210ENST00000540931 CFC1P0CG37 223 aa10.61□□□□□ -0.71
CLSTN3-210ENST00000540931 C6orf99Q4VX62 202 aa10.61□□□□□ -0.71
CLSTN3-210ENST00000540931 BVES-AS1Q5T3Y7 98 aa10.61□□□□□ -0.71
CLSTN3-210ENST00000540931 PRO1933Q9H354 126 aa10.61□□□□□ -0.71
CLSTN3-210ENST00000540931 SNCGO76070 127 aa10.6□□□□□ -0.71
CLSTN3-210ENST00000540931 COX7BP24311 80 aa10.6□□□□□ -0.71
CLSTN3-210ENST00000540931 RPL13AP40429 203 aaKnown RBP10.6□□□□□ -0.71
CLSTN3-210ENST00000540931 ELOF1P60002 83 aaKnown RBP10.6□□□□□ -0.71
CLSTN3-210ENST00000540931 PRO1854Q9UHT4 67 aa10.6□□□□□ -0.71
CLSTN3-210ENST00000540931 SLC25A20O43772 301 aa10.58□□□□□ -0.72
CLSTN3-210ENST00000540931 SMIM11BQ8TCY0 68 aa10.58□□□□□ -0.72
CLSTN3-210ENST00000540931 LINC01600Q96MT4 127 aa10.58□□□□□ -0.72
CLSTN3-210ENST00000540931 FXYD2P54710 66 aa10.56□□□□□ -0.72
CLSTN3-210ENST00000540931 FAM229BQ4G0N7 80 aa10.56□□□□□ -0.72
CLSTN3-210ENST00000540931 SMCR5Q8TEV8 140 aa10.56□□□□□ -0.72
CLSTN3-210ENST00000540931 UBR4Q5T4S7 5183 aa10.55□□□□□ -0.72
CLSTN3-210ENST00000540931 HMCN2Q8NDA2 5059 aa10.55□□□□□ -0.72
CLSTN3-210ENST00000540931 H0YGX0 51 aa10.54□□□□□ -0.72
CLSTN3-210ENST00000540931 Q1RN00 199 aa10.54□□□□□ -0.72
CLSTN3-210ENST00000540931 CRYGAP11844 174 aa10.52□□□□□ -0.73
CLSTN3-210ENST00000540931 CTAG1AP78358 180 aa10.52□□□□□ -0.73
CLSTN3-210ENST00000540931 Q9BRP9 147 aa10.52□□□□□ -0.73
CLSTN3-210ENST00000540931 COX6CP09669 75 aa10.51□□□□□ -0.73
CLSTN3-210ENST00000540931 SPRR4Q96PI1 79 aa10.51□□□□□ -0.73
CLSTN3-210ENST00000540931 GHRHP01286 108 aa10.5□□□□□ -0.73
CLSTN3-210ENST00000540931 KRTAP1-4P0C5Y4 121 aa10.5□□□□□ -0.73
CLSTN3-210ENST00000540931 LRP1Q07954 4544 aaKnown RBP10.5□□□□□ -0.73
CLSTN3-210ENST00000540931 H7C2G1 150 aa10.49□□□□□ -0.73
CLSTN3-210ENST00000540931 A0A1B0GX51 115 aa10.47□□□□□ -0.73
CLSTN3-210ENST00000540931 LINC00483Q53H64 154 aa10.47□□□□□ -0.73
CLSTN3-210ENST00000540931 LINC00575Q6W349 94 aa10.47□□□□□ -0.73
CLSTN3-210ENST00000540931 hADV29S1A0JD25 119 aa10.46□□□□□ -0.73
CLSTN3-210ENST00000540931 PSMB2P49721 201 aa10.45□□□□□ -0.74
CLSTN3-210ENST00000540931 PKHD1L1Q86WI1 4243 aa10.44□□□□□ -0.74
CLSTN3-210ENST00000540931 KRTAP10-8P60410 259 aa10.44□□□□□ -0.74
CLSTN3-210ENST00000540931 OCIAD2Q56VL3 154 aa10.44□□□□□ -0.74
CLSTN3-210ENST00000540931 GAGE2AQ6NT46 116 aa10.44□□□□□ -0.74
CLSTN3-210ENST00000540931 TEX49A0A1B0GTD5 131 aa10.43□□□□□ -0.74
CLSTN3-210ENST00000540931 ERC2-IT1O76042 136 aa10.43□□□□□ -0.74
CLSTN3-210ENST00000540931 PPDPFLQ8WWR9 84 aa10.43□□□□□ -0.74
CLSTN3-210ENST00000540931 SPRR1BP22528 89 aa10.42□□□□□ -0.74
CLSTN3-210ENST00000540931 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.42□□□□□ -0.74
CLSTN3-210ENST00000540931 H3BQ85 93 aa10.41□□□□□ -0.74
CLSTN3-210ENST00000540931 PRR26Q8N8Z3 221 aa10.41□□□□□ -0.74
CLSTN3-210ENST00000540931 TYMSOSQ8TAI1 123 aa10.41□□□□□ -0.74
CLSTN3-210ENST00000540931 LAMTOR3Q9UHA4 124 aa10.41□□□□□ -0.74
CLSTN3-210ENST00000540931 FAT3Q8TDW7 4589 aa10.4□□□□□ -0.74
CLSTN3-210ENST00000540931 IGLV5-48A0A075B6I7 105 aa10.39□□□□□ -0.75
CLSTN3-210ENST00000540931 K7ERJ3 54 aa10.39□□□□□ -0.75
CLSTN3-210ENST00000540931 TSPAN13O95857 204 aa10.39□□□□□ -0.75
CLSTN3-210ENST00000540931 LYRM7Q5U5X0 104 aa10.39□□□□□ -0.75
CLSTN3-210ENST00000540931 TRIAP1O43715 76 aa10.38□□□□□ -0.75
CLSTN3-210ENST00000540931 SSBP3-AS1Q7Z2R9 100 aa10.38□□□□□ -0.75
CLSTN3-210ENST00000540931 MT1HL1P0DM35 61 aa10.37□□□□□ -0.75
CLSTN3-210ENST00000540931 SCGB1C2P0DMR2 95 aa10.37□□□□□ -0.75
CLSTN3-210ENST00000540931 A0A087X002 238 aa10.36□□□□□ -0.75
CLSTN3-210ENST00000540931 DNAL4O96015 105 aa10.36□□□□□ -0.75
CLSTN3-210ENST00000540931 SPAG11AQ6PDA7 123 aa10.35□□□□□ -0.75
CLSTN3-210ENST00000540931 Q6ZQY7 126 aa10.35□□□□□ -0.75
CLSTN3-210ENST00000540931 ST20-AS1Q8NBB2 130 aa10.35□□□□□ -0.75
CLSTN3-210ENST00000540931 ANAPC11Q9NYG5 84 aa10.35□□□□□ -0.75
CLSTN3-210ENST00000540931 BATFQ16520 125 aa10.34□□□□□ -0.75
CLSTN3-210ENST00000540931 DEFB105AQ8NG35 78 aa10.34□□□□□ -0.75
CLSTN3-210ENST00000540931 C4orf48Q5BLP8 95 aa10.33□□□□□ -0.76
CLSTN3-210ENST00000540931 F8WEM9 126 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms