RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 RPS28P62857 69 aaKnown RBP7.37□□□□□ -1.23
CLIP1-209ENST00000537178 AKAP13Q12802 2813 aa7.37□□□□□ -1.23
CLIP1-209ENST00000537178 A0A1W2PPR1 153 aa7.37□□□□□ -1.23
CLIP1-209ENST00000537178 LINC01546A6NGU7 62 aa7.37□□□□□ -1.23
CLIP1-209ENST00000537178 CELSR1Q9NYQ6 3014 aa7.37□□□□□ -1.23
CLIP1-209ENST00000537178 Q8NBF4 154 aa7.37□□□□□ -1.23
CLIP1-209ENST00000537178 TRAV22A0A0B4J277 110 aa7.36□□□□□ -1.23
CLIP1-209ENST00000537178 C8orf87E5RJ46 101 aa7.35□□□□□ -1.23
CLIP1-209ENST00000537178 PLA2G1BP04054 148 aaKnown RBP7.34□□□□□ -1.23
CLIP1-209ENST00000537178 ELOF1P60002 83 aaKnown RBP7.34□□□□□ -1.23
CLIP1-209ENST00000537178 C4orf26Q17RF5 130 aa7.34□□□□□ -1.23
CLIP1-209ENST00000537178 IGLV5-45A0A087WSX0 123 aa7.34□□□□□ -1.23
CLIP1-209ENST00000537178 MDFIQ99750 246 aa7.34□□□□□ -1.23
CLIP1-209ENST00000537178 H3BNG1 76 aa7.33□□□□□ -1.24
CLIP1-209ENST00000537178 LINC00315P59091 139 aa7.33□□□□□ -1.24
CLIP1-209ENST00000537178 LINC00476Q8WZB0 136 aa7.32□□□□□ -1.24
CLIP1-209ENST00000537178 LOC110117498A0A087WWA1 95 aa7.32□□□□□ -1.24
CLIP1-209ENST00000537178 LINC00313P59037 77 aa7.32□□□□□ -1.24
CLIP1-209ENST00000537178 Q6ZQT0 140 aa7.32□□□□□ -1.24
CLIP1-209ENST00000537178 Q6ZRX8 168 aa7.32□□□□□ -1.24
CLIP1-209ENST00000537178 CEP295Q9C0D2 2601 aa7.31□□□□□ -1.24
CLIP1-209ENST00000537178 FASNP49327 2511 aaKnown RBP7.31□□□□□ -1.24
CLIP1-209ENST00000537178 FAM218AQ96MZ4 157 aa7.3□□□□□ -1.24
CLIP1-209ENST00000537178 LOC101927531A0A1B0GV80 90 aa7.29□□□□□ -1.24
CLIP1-209ENST00000537178 SPINT4Q6UDR6 99 aa7.29□□□□□ -1.24
CLIP1-209ENST00000537178 ANKRD11Q6UB99 2663 aaPredicted RBP7.29□□□□□ -1.24
CLIP1-209ENST00000537178 VPREB1P12018 145 aa7.29□□□□□ -1.24
CLIP1-209ENST00000537178 Q6ZRP5 223 aa7.29□□□□□ -1.24
CLIP1-209ENST00000537178 FAM229AH3BQW9 127 aa7.28□□□□□ -1.24
CLIP1-209ENST00000537178 TYMSOSQ8TAI1 123 aa7.28□□□□□ -1.24
CLIP1-209ENST00000537178 EPM2AB3EWF7 344 aa7.27□□□□□ -1.25
CLIP1-209ENST00000537178 FAM19A4Q96LR4 140 aa7.27□□□□□ -1.25
CLIP1-209ENST00000537178 IGLV8-61A0A075B6I0 122 aa7.27□□□□□ -1.25
CLIP1-209ENST00000537178 PHF5AQ7RTV0 110 aaKnown RBP7.26□□□□□ -1.25
CLIP1-209ENST00000537178 POLQO75417 2590 aa7.26□□□□□ -1.25
CLIP1-209ENST00000537178 TM2D3Q9BRN9 247 aa7.26□□□□□ -1.25
CLIP1-209ENST00000537178 C16orf90A8MZG2 172 aa7.25□□□□□ -1.25
CLIP1-209ENST00000537178 ZNF292O60281 2723 aa7.25□□□□□ -1.25
CLIP1-209ENST00000537178 LINC01600Q96MT4 127 aa7.25□□□□□ -1.25
CLIP1-209ENST00000537178 TRBV7-4A0A0J9YYF1 115 aa7.24□□□□□ -1.25
CLIP1-209ENST00000537178 RTL8CO15255 209 aa7.24□□□□□ -1.25
CLIP1-209ENST00000537178 SPTBN4Q9H254 2564 aa7.24□□□□□ -1.25
CLIP1-209ENST00000537178 CYP4F30PQ9H0H9 118 aa7.23□□□□□ -1.25
CLIP1-209ENST00000537178 NBDYA0A0U1RRE5 68 aa7.23□□□□□ -1.25
CLIP1-209ENST00000537178 ST20-AS1Q8NBB2 130 aa7.23□□□□□ -1.25
CLIP1-209ENST00000537178 CRYBG3Q68DQ2 2970 aa7.22□□□□□ -1.25
CLIP1-209ENST00000537178 Q96NJ1 140 aa7.22□□□□□ -1.25
CLIP1-209ENST00000537178 A8MWP4 228 aa7.22□□□□□ -1.25
CLIP1-209ENST00000537178 UQCR11O14957 56 aa7.22□□□□□ -1.25
CLIP1-209ENST00000537178 SSBP3-AS1Q7Z2R9 100 aa7.22□□□□□ -1.25
CLIP1-209ENST00000537178 KLK9Q2XQG4 91 aa7.22□□□□□ -1.25
CLIP1-209ENST00000537178 GVQW2A0A096LPI5 108 aaPredicted RBP7.21□□□□□ -1.25
CLIP1-209ENST00000537178 RPL37AP61513 92 aaKnown RBP7.21□□□□□ -1.25
CLIP1-209ENST00000537178 ERC2-IT1O76042 136 aa7.21□□□□□ -1.26
CLIP1-209ENST00000537178 MRPL34Q9BQ48 92 aaKnown RBP7.21□□□□□ -1.26
CLIP1-209ENST00000537178 AKAP9Q99996 3911 aa7.2□□□□□ -1.26
CLIP1-209ENST00000537178 CHTF8P0CG12 524 aa7.18□□□□□ -1.26
CLIP1-209ENST00000537178 COA5Q86WW8 74 aa7.18□□□□□ -1.26
CLIP1-209ENST00000537178 CRIPTQ9P021 101 aa7.18□□□□□ -1.26
CLIP1-209ENST00000537178 CELSR2Q9HCU4 2923 aa7.18□□□□□ -1.26
CLIP1-209ENST00000537178 A8MUN3 132 aa7.18□□□□□ -1.26
CLIP1-209ENST00000537178 LINC00588Q9Y4M8 146 aa7.17□□□□□ -1.26
CLIP1-209ENST00000537178 IGLV6-57P01721 117 aa7.16□□□□□ -1.26
CLIP1-209ENST00000537178 K7EQZ3 153 aa7.15□□□□□ -1.26
CLIP1-209ENST00000537178 CSMD2Q7Z408 3487 aa7.15□□□□□ -1.26
CLIP1-209ENST00000537178 Q8NAQ8 132 aa7.15□□□□□ -1.26
CLIP1-209ENST00000537178 COL12A1Q99715 3063 aa7.14□□□□□ -1.27
CLIP1-209ENST00000537178 DNAH10OSP0CZ25 163 aa7.13□□□□□ -1.27
CLIP1-209ENST00000537178 NBPF19A0A087WUL8 3843 aa7.13□□□□□ -1.27
CLIP1-209ENST00000537178 COX6B2Q6YFQ2 88 aa7.13□□□□□ -1.27
CLIP1-209ENST00000537178 LITAFQ99732 161 aa7.12□□□□□ -1.27
CLIP1-209ENST00000537178 USP24Q9UPU5 2620 aa7.12□□□□□ -1.27
CLIP1-209ENST00000537178 APLNQ9ULZ1 77 aa7.12□□□□□ -1.27
CLIP1-209ENST00000537178 MIR22HGQ0VDD5 57 aa7.11□□□□□ -1.27
CLIP1-209ENST00000537178 KCNQ1DNQ9H478 68 aa7.11□□□□□ -1.27
CLIP1-209ENST00000537178 PRR15Q8IV56 129 aa7.1□□□□□ -1.27
CLIP1-209ENST00000537178 C8orf17Q9NRJ1 99 aa7.1□□□□□ -1.27
CLIP1-209ENST00000537178 IGLV1-50A0A075B6I6 118 aa7.1□□□□□ -1.27
CLIP1-209ENST00000537178 J3QL48 77 aa7.1□□□□□ -1.27
CLIP1-209ENST00000537178 KRTAP24-1Q3LI83 254 aa7.1□□□□□ -1.27
CLIP1-209ENST00000537178 LINC00528Q8N1L1 170 aa7.1□□□□□ -1.27
CLIP1-209ENST00000537178 WWC2-AS2Q96NR7 200 aa7.09□□□□□ -1.27
CLIP1-209ENST00000537178 KLKP1Q107X0 134 aa7.09□□□□□ -1.28
CLIP1-209ENST00000537178 EIF4EBP3O60516 100 aaPredicted RBP7.08□□□□□ -1.28
CLIP1-209ENST00000537178 LINC00336Q6ZUF6 198 aa7.07□□□□□ -1.28
CLIP1-209ENST00000537178 FAM168BA1KXE4 195 aa7.07□□□□□ -1.28
CLIP1-209ENST00000537178 IGFL1Q6UW32 110 aa7.07□□□□□ -1.28
CLIP1-209ENST00000537178 MGAM2Q2M2H8 2515 aa7.07□□□□□ -1.28
CLIP1-209ENST00000537178 A0A1B0GVX0 72 aa7.06□□□□□ -1.28
CLIP1-209ENST00000537178 DSCR10P59022 87 aa7.06□□□□□ -1.28
CLIP1-209ENST00000537178 LINC00304Q8N9R0 145 aa7.05□□□□□ -1.28
CLIP1-209ENST00000537178 ANKRD17O75179 2603 aaKnown RBP7.05□□□□□ -1.28
CLIP1-209ENST00000537178 ZNF861PO60384 105 aa7.04□□□□□ -1.28
CLIP1-209ENST00000537178 C9orf129Q5T035 196 aaKnown RBP7.04□□□□□ -1.28
CLIP1-209ENST00000537178 CD164Q04900 197 aa7.03□□□□□ -1.28
CLIP1-209ENST00000537178 OBSCN-AS1Q96MR7 158 aa7.02□□□□□ -1.29
CLIP1-209ENST00000537178 WIPF1O43516 503 aa7.01□□□□□ -1.29
CLIP1-209ENST00000537178 PRR34Q9NV39 138 aa7.01□□□□□ -1.29
CLIP1-209ENST00000537178 Q8N377 158 aa7□□□□□ -1.29
CLIP1-209ENST00000537178 LCA10Q71F78 164 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms