RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-233	ENST00000535896	PRKDC	P78527	4128 aa	Known RBP	4.27	□□□□□ -1.73
SYNE1-233	ENST00000535896	TRAV23DV6	A0A075B6W5	121 aa		4.27	□□□□□ -1.73
SYNE1-233	ENST00000535896		A0A087WVE0	104 aa		4.27	□□□□□ -1.73
SYNE1-233	ENST00000535896	TRBV7-4	A0A0J9YYF1	115 aa		4.27	□□□□□ -1.73
SYNE1-233	ENST00000535896		A0A1B0GW54	56 aa		4.27	□□□□□ -1.73
SYNE1-233	ENST00000535896	NDUFC1	O43677	76 aa		4.27	□□□□□ -1.73
SYNE1-233	ENST00000535896	SPART-AS1	P0CW21	52 aa		4.27	□□□□□ -1.73
SYNE1-233	ENST00000535896	ATP5E	P56381	51 aa	Predicted RBP	4.27	□□□□□ -1.73
SYNE1-233	ENST00000535896	CLPSL2	Q6UWE3	100 aa		4.27	□□□□□ -1.73
SYNE1-233	ENST00000535896		Q8NAQ8	132 aa		4.27	□□□□□ -1.73
SYNE1-233	ENST00000535896	ELOF1	P60002	83 aa	Known RBP	4.26	□□□□□ -1.73
SYNE1-233	ENST00000535896	KLKP1	Q107X0	134 aa		4.26	□□□□□ -1.73
SYNE1-233	ENST00000535896	ENHO	Q6UWT2	76 aa		4.26	□□□□□ -1.73
SYNE1-233	ENST00000535896	DPH3	Q96FX2	82 aa		4.26	□□□□□ -1.73
SYNE1-233	ENST00000535896	LAMTOR3	Q9UHA4	124 aa		4.26	□□□□□ -1.73
SYNE1-233	ENST00000535896	ZNF73	O43830	326 aa	Predicted RBP	4.25	□□□□□ -1.73
SYNE1-233	ENST00000535896	COX7B	P24311	80 aa		4.25	□□□□□ -1.73
SYNE1-233	ENST00000535896	LINC01547	P58512	204 aa	Predicted RBP	4.25	□□□□□ -1.73
SYNE1-233	ENST00000535896	KRTAP10-11	P60412	298 aa		4.25	□□□□□ -1.73
SYNE1-233	ENST00000535896		Q6ZQY7	126 aa		4.25	□□□□□ -1.73
SYNE1-233	ENST00000535896		Q6ZVQ6	151 aa		4.25	□□□□□ -1.73
SYNE1-233	ENST00000535896	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	4.25	□□□□□ -1.73
SYNE1-233	ENST00000535896	IGLV10-54	A0A075B6I4	117 aa		4.24	□□□□□ -1.73
SYNE1-233	ENST00000535896		M0R378	163 aa		4.24	□□□□□ -1.73
SYNE1-233	ENST00000535896	ERC2-IT1	O76042	136 aa		4.24	□□□□□ -1.73
SYNE1-233	ENST00000535896	PRR3	P79522	188 aa	Known RBP	4.24	□□□□□ -1.73
SYNE1-233	ENST00000535896	DEFB135	Q30KP9	77 aa		4.24	□□□□□ -1.73
SYNE1-233	ENST00000535896	UNQ6190/PRO20217	Q6UXQ8	127 aa		4.24	□□□□□ -1.73
SYNE1-233	ENST00000535896		Q8NDZ9	215 aa		4.24	□□□□□ -1.73
SYNE1-233	ENST00000535896	C1orf43	Q9BWL3	253 aa		4.24	□□□□□ -1.73
SYNE1-233	ENST00000535896	DNAH9	Q9NYC9	4486 aa		4.23	□□□□□ -1.73
SYNE1-233	ENST00000535896		A0A096LPF7	62 aa		4.23	□□□□□ -1.73
SYNE1-233	ENST00000535896	FAM236D	A0A1B0GTK5	79 aa		4.23	□□□□□ -1.73
SYNE1-233	ENST00000535896	EPM2A	B3EWF7	344 aa		4.23	□□□□□ -1.73
SYNE1-233	ENST00000535896	FAM236C	P0DP71	79 aa		4.23	□□□□□ -1.73
SYNE1-233	ENST00000535896	C9orf116	Q5BN46	136 aa	Predicted RBP	4.23	□□□□□ -1.73
SYNE1-233	ENST00000535896	FAM19A1	Q7Z5A9	133 aa		4.23	□□□□□ -1.73
SYNE1-233	ENST00000535896	MRAP	Q8TCY5	172 aa		4.23	□□□□□ -1.73
SYNE1-233	ENST00000535896	C6orf48	Q9UBA6	75 aa		4.23	□□□□□ -1.73
SYNE1-233	ENST00000535896	PLA2G1B	P04054	148 aa	Known RBP	4.22	□□□□□ -1.73
SYNE1-233	ENST00000535896	VPREB1	P12018	145 aa		4.22	□□□□□ -1.73
SYNE1-233	ENST00000535896	C10orf25	Q5T742	122 aa		4.22	□□□□□ -1.73
SYNE1-233	ENST00000535896	CYSTM1	Q9H1C7	97 aa		4.22	□□□□□ -1.73
SYNE1-233	ENST00000535896	KLK12	Q9UKR0	248 aa		4.22	□□□□□ -1.73
SYNE1-233	ENST00000535896	CELA1	Q9UNI1	258 aa		4.22	□□□□□ -1.73
SYNE1-233	ENST00000535896	SERP1	Q9Y6X1	66 aa		4.22	□□□□□ -1.73
SYNE1-233	ENST00000535896	STAB2	Q8WWQ8	2551 aa		4.21	□□□□□ -1.74
SYNE1-233	ENST00000535896		K7EIL1	84 aa		4.21	□□□□□ -1.74
SYNE1-233	ENST00000535896		H7BZZ5	65 aa		4.2	□□□□□ -1.74
SYNE1-233	ENST00000535896	PRB2	P02812	416 aa	Predicted RBP	4.2	□□□□□ -1.74
SYNE1-233	ENST00000535896	C20orf197	Q8N268	126 aa		4.2	□□□□□ -1.74
SYNE1-233	ENST00000535896	CAMK2N2	Q96S95	79 aa		4.2	□□□□□ -1.74
SYNE1-233	ENST00000535896	TG	P01266	2768 aa		4.19	□□□□□ -1.74
SYNE1-233	ENST00000535896	TLX1NB	P0CAT3	122 aa		4.19	□□□□□ -1.74
SYNE1-233	ENST00000535896	HAMP	P81172	84 aa		4.19	□□□□□ -1.74
SYNE1-233	ENST00000535896	KRTAP26-1	Q6PEX3	210 aa		4.19	□□□□□ -1.74
SYNE1-233	ENST00000535896	B9D2	Q9BPU9	175 aa		4.19	□□□□□ -1.74
SYNE1-233	ENST00000535896	HUWE1	Q7Z6Z7	4374 aa	Known RBP	4.19	□□□□□ -1.74
SYNE1-233	ENST00000535896	NBEAL2	Q6ZNJ1	2754 aa		4.19	□□□□□ -1.74
SYNE1-233	ENST00000535896	SEC61G	P60059	68 aa		4.18	□□□□□ -1.74
SYNE1-233	ENST00000535896	LINC01556	Q5JQF7	62 aa		4.18	□□□□□ -1.74
SYNE1-233	ENST00000535896	KCNQ1DN	Q9H478	68 aa		4.18	□□□□□ -1.74
SYNE1-233	ENST00000535896	IGLV5-48	A0A075B6I7	105 aa		4.17	□□□□□ -1.74
SYNE1-233	ENST00000535896	IGLV5-37	A0A075B6J1	123 aa		4.17	□□□□□ -1.74
SYNE1-233	ENST00000535896	C15orf56	Q8N910	161 aa		4.17	□□□□□ -1.74
SYNE1-233	ENST00000535896	DHRS4-AS1	Q9P1J3	65 aa		4.17	□□□□□ -1.74
SYNE1-233	ENST00000535896	TENM3	Q9P273	2699 aa		4.17	□□□□□ -1.74
SYNE1-233	ENST00000535896	PRY	O14603	147 aa		4.16	□□□□□ -1.74
SYNE1-233	ENST00000535896	DEFB4A	O15263	64 aa		4.16	□□□□□ -1.74
SYNE1-233	ENST00000535896	NREP	Q16612	68 aa		4.16	□□□□□ -1.74
SYNE1-233	ENST00000535896		Q5XG85	94 aa		4.16	□□□□□ -1.74
SYNE1-233	ENST00000535896	XAGE1A	Q9HD64	81 aa		4.16	□□□□□ -1.74
SYNE1-233	ENST00000535896	COL7A1	Q02388	2944 aa		4.16	□□□□□ -1.74
SYNE1-233	ENST00000535896	SMIM26	A0A096LP01	95 aa		4.15	□□□□□ -1.74
SYNE1-233	ENST00000535896		M0R2N4	97 aa		4.15	□□□□□ -1.74
SYNE1-233	ENST00000535896	BPY2	O14599	106 aa		4.15	□□□□□ -1.74
SYNE1-233	ENST00000535896	OXT	P01178	125 aa		4.15	□□□□□ -1.74
SYNE1-233	ENST00000535896	HTN3	P15516	51 aa		4.15	□□□□□ -1.74
SYNE1-233	ENST00000535896	FUS	P35637	526 aa	Known RBP eCLIP	4.15	□□□□□ -1.74
SYNE1-233	ENST00000535896	HIGD2B	Q4VC39	106 aa		4.15	□□□□□ -1.74
SYNE1-233	ENST00000535896		Q6ZRU5	148 aa		4.15	□□□□□ -1.74
SYNE1-233	ENST00000535896	TM2D3	Q9BRN9	247 aa		4.15	□□□□□ -1.74
SYNE1-233	ENST00000535896	SYCN	Q0VAF6	134 aa		4.14	□□□□□ -1.75
SYNE1-233	ENST00000535896	WFDC10B	Q8IUB3	73 aa		4.14	□□□□□ -1.75
SYNE1-233	ENST00000535896	NKAPP1	Q8N9T2	125 aa		4.14	□□□□□ -1.75
SYNE1-233	ENST00000535896	TMEM254	Q8TBM7	123 aa		4.14	□□□□□ -1.75
SYNE1-233	ENST00000535896	FAM30A	Q9NZY2	134 aa		4.14	□□□□□ -1.75
SYNE1-233	ENST00000535896	DNAH7	Q8WXX0	4024 aa		4.14	□□□□□ -1.75
SYNE1-233	ENST00000535896	TRAV10	A0A0B4J240	114 aa		4.14	□□□□□ -1.75
SYNE1-233	ENST00000535896	IGKV4-1	P06312	121 aa		4.14	□□□□□ -1.75
SYNE1-233	ENST00000535896	DNAH10OS	P0CZ25	163 aa		4.14	□□□□□ -1.75
SYNE1-233	ENST00000535896	SPRR1A	P35321	89 aa		4.14	□□□□□ -1.75
SYNE1-233	ENST00000535896		Q6ZRX8	168 aa		4.14	□□□□□ -1.75
SYNE1-233	ENST00000535896	OCR1	Q9BZK8	76 aa		4.14	□□□□□ -1.75
SYNE1-233	ENST00000535896		F8WEM9	126 aa		4.13	□□□□□ -1.75
SYNE1-233	ENST00000535896		Q6ZRP5	223 aa		4.13	□□□□□ -1.75
SYNE1-233	ENST00000535896	RMI2	Q96E14	147 aa		4.13	□□□□□ -1.75
SYNE1-233	ENST00000535896	SPRR4	Q96PI1	79 aa		4.13	□□□□□ -1.75
SYNE1-233	ENST00000535896		A0A0U1RQV1	116 aa		4.12	□□□□□ -1.75
SYNE1-233	ENST00000535896	LCE6A	A0A183	80 aa		4.12	□□□□□ -1.75

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