RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.82□□□□□ -1
CPSF1-211ENST00000533492 HIST1H2BHQ93079 126 aa8.82□□□□□ -1
CPSF1-211ENST00000533492 HIST1H2BNQ99877 126 aa8.82□□□□□ -1
CPSF1-211ENST00000533492 HIST1H2BMQ99879 126 aa8.82□□□□□ -1
CPSF1-211ENST00000533492 Q9BRP9 147 aa8.82□□□□□ -1
CPSF1-211ENST00000533492 SPINK1P00995 79 aa8.81□□□□□ -1
CPSF1-211ENST00000533492 SOSTDC1Q6X4U4 206 aa8.81□□□□□ -1
CPSF1-211ENST00000533492 HINT1P49773 126 aaPredicted RBP8.8□□□□□ -1
CPSF1-211ENST00000533492 MOBPQ13875 183 aa8.8□□□□□ -1
CPSF1-211ENST00000533492 FP248Q71RG6 208 aaPredicted RBP8.8□□□□□ -1
CPSF1-211ENST00000533492 SSBP3-AS1Q7Z2R9 100 aa8.8□□□□□ -1
CPSF1-211ENST00000533492 CBY1Q9Y3M2 126 aa8.8□□□□□ -1
CPSF1-211ENST00000533492 ZNF73O43830 326 aaPredicted RBP8.79□□□□□ -1
CPSF1-211ENST00000533492 EIF4EBP3O60516 100 aaPredicted RBP8.79□□□□□ -1
CPSF1-211ENST00000533492 PET117Q6UWS5 81 aa8.79□□□□□ -1
CPSF1-211ENST00000533492 LINC01545Q5VT33 79 aa8.78□□□□□ -1
CPSF1-211ENST00000533492 OR13C6PQ8NH95 151 aa8.78□□□□□ -1
CPSF1-211ENST00000533492 SPANXCQ9NY87 97 aa8.77□□□□□ -1.01
CPSF1-211ENST00000533492 ZNF815PA8K554 130 aa8.76□□□□□ -1.01
CPSF1-211ENST00000533492 TIMM17BO60830 172 aa8.76□□□□□ -1.01
CPSF1-211ENST00000533492 LINC00308Q8TCZ7 52 aa8.76□□□□□ -1.01
CPSF1-211ENST00000533492 C9orf153Q5TBE3 101 aa8.74□□□□□ -1.01
CPSF1-211ENST00000533492 LITAFQ99732 161 aa8.74□□□□□ -1.01
CPSF1-211ENST00000533492 C3orf79P0CE67 100 aa8.73□□□□□ -1.01
CPSF1-211ENST00000533492 C5orf52A6NGY3 159 aa8.72□□□□□ -1.01
CPSF1-211ENST00000533492 KRTDAPP60985 99 aa8.72□□□□□ -1.01
CPSF1-211ENST00000533492 RPS29P62273 56 aaKnown RBP8.72□□□□□ -1.01
CPSF1-211ENST00000533492 ST20-AS1Q8NBB2 130 aa8.72□□□□□ -1.01
CPSF1-211ENST00000533492 LINC00518Q8N0U6 118 aa8.71□□□□□ -1.02
CPSF1-211ENST00000533492 SPANXDQ9BXN6 97 aa8.71□□□□□ -1.02
CPSF1-211ENST00000533492 TTTY13Q9BZ97 58 aa8.71□□□□□ -1.02
CPSF1-211ENST00000533492 SLC25A20O43772 301 aa8.7□□□□□ -1.02
CPSF1-211ENST00000533492 KRTAP13-3Q3SY46 172 aa8.7□□□□□ -1.02
CPSF1-211ENST00000533492 Q8N377 158 aa8.7□□□□□ -1.02
CPSF1-211ENST00000533492 C20orf202A1L168 122 aa8.69□□□□□ -1.02
CPSF1-211ENST00000533492 SCGB1D4Q6XE38 83 aa8.69□□□□□ -1.02
CPSF1-211ENST00000533492 DHRS4-AS1Q9P1J3 65 aa8.69□□□□□ -1.02
CPSF1-211ENST00000533492 COA6Q5JTJ3 125 aaKnown RBP8.68□□□□□ -1.02
CPSF1-211ENST00000533492 SLC25A34Q6PIV7 304 aa8.68□□□□□ -1.02
CPSF1-211ENST00000533492 COX7BP24311 80 aa8.66□□□□□ -1.02
CPSF1-211ENST00000533492 C6orf99Q4VX62 202 aa8.66□□□□□ -1.02
CPSF1-211ENST00000533492 COPS9Q8WXC6 57 aa8.66□□□□□ -1.02
CPSF1-211ENST00000533492 MUC17Q685J3 4493 aa8.65□□□□□ -1.02
CPSF1-211ENST00000533492 LAMTOR3Q9UHA4 124 aa8.65□□□□□ -1.02
CPSF1-211ENST00000533492 SPRR1BP22528 89 aa8.64□□□□□ -1.03
CPSF1-211ENST00000533492 ELOF1P60002 83 aaKnown RBP8.64□□□□□ -1.03
CPSF1-211ENST00000533492 IFITM1P13164 125 aa8.63□□□□□ -1.03
CPSF1-211ENST00000533492 TAL2Q16559 108 aa8.63□□□□□ -1.03
CPSF1-211ENST00000533492 ANKRD39Q53RE8 183 aa8.63□□□□□ -1.03
CPSF1-211ENST00000533492 ATOH7Q8N100 152 aa8.63□□□□□ -1.03
CPSF1-211ENST00000533492 AKR1D1P51857 326 aa8.62□□□□□ -1.03
CPSF1-211ENST00000533492 SEC61BP60468 96 aaKnown RBP8.62□□□□□ -1.03
CPSF1-211ENST00000533492 ASB16-AS1Q495Z4 193 aa8.62□□□□□ -1.03
CPSF1-211ENST00000533492 DEFB105AQ8NG35 78 aa8.62□□□□□ -1.03
CPSF1-211ENST00000533492 A6NDN8 102 aa8.61□□□□□ -1.03
CPSF1-211ENST00000533492 HRCT1Q6UXD1 115 aa8.61□□□□□ -1.03
CPSF1-211ENST00000533492 Q6ZVH6 145 aa8.61□□□□□ -1.03
CPSF1-211ENST00000533492 LCE2AQ5TA79 106 aaPredicted RBP8.6□□□□□ -1.03
CPSF1-211ENST00000533492 LIMD2Q9BT23 127 aa8.6□□□□□ -1.03
CPSF1-211ENST00000533492 TRBV7-6A0A0J9YX20 115 aa8.59□□□□□ -1.03
CPSF1-211ENST00000533492 MUSTN1Q8IVN3 82 aa8.59□□□□□ -1.03
CPSF1-211ENST00000533492 FAT4Q6V0I7 4981 aa8.58□□□□□ -1.04
CPSF1-211ENST00000533492 TEX49A0A1B0GTD5 131 aa8.58□□□□□ -1.04
CPSF1-211ENST00000533492 A0A1B0GWB2 263 aa8.58□□□□□ -1.04
CPSF1-211ENST00000533492 Q1RN00 199 aa8.58□□□□□ -1.04
CPSF1-211ENST00000533492 PCP2Q8IVA1 136 aa8.58□□□□□ -1.04
CPSF1-211ENST00000533492 SNRPEP62304 92 aaKnown RBP8.56□□□□□ -1.04
CPSF1-211ENST00000533492 PRO1933Q9H354 126 aa8.56□□□□□ -1.04
CPSF1-211ENST00000533492 TRAV13-2A0A0B4J235 113 aa8.54□□□□□ -1.04
CPSF1-211ENST00000533492 A4D1N5 150 aa8.54□□□□□ -1.04
CPSF1-211ENST00000533492 S100A2P29034 98 aa8.53□□□□□ -1.04
CPSF1-211ENST00000533492 XP32Q5T750 250 aa8.53□□□□□ -1.04
CPSF1-211ENST00000533492 H7C2G1 150 aa8.52□□□□□ -1.05
CPSF1-211ENST00000533492 CD164Q04900 197 aa8.52□□□□□ -1.05
CPSF1-211ENST00000533492 NHP2Q9NX24 153 aaKnown RBP8.52□□□□□ -1.05
CPSF1-211ENST00000533492 HSBP1L1C9JCN9 74 aa8.51□□□□□ -1.05
CPSF1-211ENST00000533492 SMIM11BQ8TCY0 68 aa8.51□□□□□ -1.05
CPSF1-211ENST00000533492 IGLV5-48A0A075B6I7 105 aa8.5□□□□□ -1.05
CPSF1-211ENST00000533492 LINC01547P58512 204 aaPredicted RBP8.5□□□□□ -1.05
CPSF1-211ENST00000533492 SMIM29Q86T20 159 aa8.5□□□□□ -1.05
CPSF1-211ENST00000533492 KRTAP4-1Q9BYQ7 146 aa8.5□□□□□ -1.05
CPSF1-211ENST00000533492 VAMP3Q15836 100 aa8.49□□□□□ -1.05
CPSF1-211ENST00000533492 HIST3H2BBQ8N257 126 aa8.49□□□□□ -1.05
CPSF1-211ENST00000533492 KRTAP9-2Q9BYQ4 174 aa8.49□□□□□ -1.05
CPSF1-211ENST00000533492 HIST1H2BLQ99880 126 aa8.48□□□□□ -1.05
CPSF1-211ENST00000533492 C9orf92A6NGG3 77 aa8.47□□□□□ -1.05
CPSF1-211ENST00000533492 S100A6P06703 90 aa8.46□□□□□ -1.06
CPSF1-211ENST00000533492 A0A0G2JQZ4 141 aa8.44□□□□□ -1.06
CPSF1-211ENST00000533492 Q5XG85 94 aa8.44□□□□□ -1.06
CPSF1-211ENST00000533492 F8WEM9 126 aa8.43□□□□□ -1.06
CPSF1-211ENST00000533492 S100A1P23297 94 aa8.43□□□□□ -1.06
CPSF1-211ENST00000533492 LINC00575Q6W349 94 aa8.42□□□□□ -1.06
CPSF1-211ENST00000533492 PCOTHQ58A44 107 aa8.41□□□□□ -1.06
CPSF1-211ENST00000533492 C1orf195Q5TG92 126 aa8.41□□□□□ -1.06
CPSF1-211ENST00000533492 hADV29S1A0JD25 119 aa8.4□□□□□ -1.06
CPSF1-211ENST00000533492 SCGB1D1O95968 90 aa8.4□□□□□ -1.06
CPSF1-211ENST00000533492 TCL1BO95988 128 aa8.4□□□□□ -1.06
CPSF1-211ENST00000533492 IGLV8-61A0A075B6I0 122 aa8.39□□□□□ -1.07
CPSF1-211ENST00000533492 Q6ZQY7 126 aa8.39□□□□□ -1.07
CPSF1-211ENST00000533492 HIST1H4GQ99525 98 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms