RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 ZNF815PA8K554 130 aa7.65□□□□□ -1.18
VPS28-211ENST00000530790 ZNF73O43830 326 aaPredicted RBP7.65□□□□□ -1.18
VPS28-211ENST00000530790 EIF4EBP3O60516 100 aaPredicted RBP7.65□□□□□ -1.18
VPS28-211ENST00000530790 TIMM17BO60830 172 aa7.65□□□□□ -1.18
VPS28-211ENST00000530790 C3orf79P0CE67 100 aa7.65□□□□□ -1.18
VPS28-211ENST00000530790 JOSD1Q15040 202 aaPredicted RBP7.65□□□□□ -1.18
VPS28-211ENST00000530790 Q9BRP9 147 aa7.65□□□□□ -1.18
VPS28-211ENST00000530790 SPANXCQ9NY87 97 aa7.65□□□□□ -1.18
VPS28-211ENST00000530790 CBY1Q9Y3M2 126 aa7.65□□□□□ -1.18
VPS28-211ENST00000530790 IGLV7-46A0A075B6I9 117 aa7.64□□□□□ -1.19
VPS28-211ENST00000530790 ERC2-IT1O76042 136 aa7.64□□□□□ -1.19
VPS28-211ENST00000530790 KRTDAPP60985 99 aa7.64□□□□□ -1.19
VPS28-211ENST00000530790 TPRXLQ17RH7 258 aa7.64□□□□□ -1.19
VPS28-211ENST00000530790 COA6Q5JTJ3 125 aaKnown RBP7.64□□□□□ -1.19
VPS28-211ENST00000530790 LITAFQ99732 161 aa7.64□□□□□ -1.19
VPS28-211ENST00000530790 C20orf202A1L168 122 aa7.63□□□□□ -1.19
VPS28-211ENST00000530790 LINC00308Q8TCZ7 52 aa7.63□□□□□ -1.19
VPS28-211ENST00000530790 IGLV9-49A0A0B4J1Y8 123 aa7.62□□□□□ -1.19
VPS28-211ENST00000530790 HINT1P49773 126 aaPredicted RBP7.62□□□□□ -1.19
VPS28-211ENST00000530790 MOBPQ13875 183 aa7.62□□□□□ -1.19
VPS28-211ENST00000530790 OR13C6PQ8NH95 151 aa7.62□□□□□ -1.19
VPS28-211ENST00000530790 TTTY13Q9BZ97 58 aa7.62□□□□□ -1.19
VPS28-211ENST00000530790 CDIP1Q9H305 208 aa7.62□□□□□ -1.19
VPS28-211ENST00000530790 SPINK1P00995 79 aa7.6□□□□□ -1.19
VPS28-211ENST00000530790 SCGB1D4Q6XE38 83 aa7.6□□□□□ -1.19
VPS28-211ENST00000530790 FP248Q71RG6 208 aaPredicted RBP7.6□□□□□ -1.19
VPS28-211ENST00000530790 TMA7Q9Y2S6 64 aaKnown RBP7.6□□□□□ -1.19
VPS28-211ENST00000530790 SPANXDQ9BXN6 97 aa7.59□□□□□ -1.19
VPS28-211ENST00000530790 A0A0U1RQV1 116 aa7.58□□□□□ -1.2
VPS28-211ENST00000530790 SSBP3-AS1Q7Z2R9 100 aa7.58□□□□□ -1.2
VPS28-211ENST00000530790 AKR1D1P51857 326 aa7.57□□□□□ -1.2
VPS28-211ENST00000530790 SNRPEP62304 92 aaKnown RBP7.57□□□□□ -1.2
VPS28-211ENST00000530790 C9orf153Q5TBE3 101 aa7.57□□□□□ -1.2
VPS28-211ENST00000530790 LINC00518Q8N0U6 118 aa7.57□□□□□ -1.2
VPS28-211ENST00000530790 MUC2Q02817 5179 aa7.56□□□□□ -1.2
VPS28-211ENST00000530790 C5orf52A6NGY3 159 aa7.56□□□□□ -1.2
VPS28-211ENST00000530790 S100A6P06703 90 aa7.56□□□□□ -1.2
VPS28-211ENST00000530790 RPS29P62273 56 aaKnown RBP7.56□□□□□ -1.2
VPS28-211ENST00000530790 ANKRD39Q53RE8 183 aa7.56□□□□□ -1.2
VPS28-211ENST00000530790 ATOH7Q8N100 152 aa7.56□□□□□ -1.2
VPS28-211ENST00000530790 COPS9Q8WXC6 57 aa7.56□□□□□ -1.2
VPS28-211ENST00000530790 HIST3H2BBQ8N257 126 aa7.55□□□□□ -1.2
VPS28-211ENST00000530790 ST20-AS1Q8NBB2 130 aa7.55□□□□□ -1.2
VPS28-211ENST00000530790 DHRS4-AS1Q9P1J3 65 aa7.55□□□□□ -1.2
VPS28-211ENST00000530790 COX7BP24311 80 aa7.53□□□□□ -1.2
VPS28-211ENST00000530790 ELOF1P60002 83 aaKnown RBP7.53□□□□□ -1.2
VPS28-211ENST00000530790 C6orf99Q4VX62 202 aa7.53□□□□□ -1.2
VPS28-211ENST00000530790 SLC25A34Q6PIV7 304 aa7.53□□□□□ -1.2
VPS28-211ENST00000530790 IFITM1P13164 125 aa7.52□□□□□ -1.21
VPS28-211ENST00000530790 Q6ZVH6 145 aa7.52□□□□□ -1.21
VPS28-211ENST00000530790 Q8N377 158 aa7.52□□□□□ -1.21
VPS28-211ENST00000530790 SLC25A20O43772 301 aa7.51□□□□□ -1.21
VPS28-211ENST00000530790 PCP2Q8IVA1 136 aa7.51□□□□□ -1.21
VPS28-211ENST00000530790 HIST1H2BLQ99880 126 aa7.51□□□□□ -1.21
VPS28-211ENST00000530790 SPRR1BP22528 89 aa7.5□□□□□ -1.21
VPS28-211ENST00000530790 KRTAP13-3Q3SY46 172 aa7.5□□□□□ -1.21
VPS28-211ENST00000530790 A6NDN8 102 aa7.49□□□□□ -1.21
VPS28-211ENST00000530790 S100A2P29034 98 aa7.49□□□□□ -1.21
VPS28-211ENST00000530790 LAMTOR3Q9UHA4 124 aa7.49□□□□□ -1.21
VPS28-211ENST00000530790 TRBV7-6A0A0J9YX20 115 aa7.48□□□□□ -1.21
VPS28-211ENST00000530790 A0A1B0GWB2 263 aa7.47□□□□□ -1.21
VPS28-211ENST00000530790 MUSTN1Q8IVN3 82 aa7.47□□□□□ -1.21
VPS28-211ENST00000530790 HSBP1L1C9JCN9 74 aa7.46□□□□□ -1.22
VPS28-211ENST00000530790 TAL2Q16559 108 aa7.46□□□□□ -1.22
VPS28-211ENST00000530790 LIMD2Q9BT23 127 aa7.46□□□□□ -1.22
VPS28-211ENST00000530790 TRAV13-2A0A0B4J235 113 aa7.45□□□□□ -1.22
VPS28-211ENST00000530790 DEFB105AQ8NG35 78 aa7.45□□□□□ -1.22
VPS28-211ENST00000530790 TEX49A0A1B0GTD5 131 aa7.44□□□□□ -1.22
VPS28-211ENST00000530790 Q1RN00 199 aa7.44□□□□□ -1.22
VPS28-211ENST00000530790 A4D1N5 150 aa7.43□□□□□ -1.22
VPS28-211ENST00000530790 HRCT1Q6UXD1 115 aa7.43□□□□□ -1.22
VPS28-211ENST00000530790 MUC17Q685J3 4493 aa7.43□□□□□ -1.22
VPS28-211ENST00000530790 NHP2Q9NX24 153 aaKnown RBP7.42□□□□□ -1.22
VPS28-211ENST00000530790 ASB16-AS1Q495Z4 193 aa7.41□□□□□ -1.22
VPS28-211ENST00000530790 SMIM11BQ8TCY0 68 aa7.41□□□□□ -1.22
VPS28-211ENST00000530790 PRO1933Q9H354 126 aa7.41□□□□□ -1.22
VPS28-211ENST00000530790 IGLV5-48A0A075B6I7 105 aa7.4□□□□□ -1.22
VPS28-211ENST00000530790 SEC61BP60468 96 aaKnown RBP7.4□□□□□ -1.22
VPS28-211ENST00000530790 LOC105371267A0A1B0GV96 52 aa7.39□□□□□ -1.23
VPS28-211ENST00000530790 CD164Q04900 197 aa7.39□□□□□ -1.23
VPS28-211ENST00000530790 LINC01547P58512 204 aaPredicted RBP7.38□□□□□ -1.23
VPS28-211ENST00000530790 H7C2G1 150 aa7.37□□□□□ -1.23
VPS28-211ENST00000530790 VAMP3Q15836 100 aa7.37□□□□□ -1.23
VPS28-211ENST00000530790 SMIM29Q86T20 159 aa7.37□□□□□ -1.23
VPS28-211ENST00000530790 FAT4Q6V0I7 4981 aa7.37□□□□□ -1.23
VPS28-211ENST00000530790 SCGB1D1O95968 90 aa7.36□□□□□ -1.23
VPS28-211ENST00000530790 XP32Q5T750 250 aa7.36□□□□□ -1.23
VPS28-211ENST00000530790 LCE2AQ5TA79 106 aaPredicted RBP7.36□□□□□ -1.23
VPS28-211ENST00000530790 PYY3Q5JQD4 70 aa7.35□□□□□ -1.23
VPS28-211ENST00000530790 F8WEM9 126 aa7.33□□□□□ -1.24
VPS28-211ENST00000530790 LINC00575Q6W349 94 aa7.33□□□□□ -1.24
VPS28-211ENST00000530790 HIST1H4GQ99525 98 aa7.33□□□□□ -1.24
VPS28-211ENST00000530790 Q5XG85 94 aa7.32□□□□□ -1.24
VPS28-211ENST00000530790 C12orf57Q99622 126 aa7.32□□□□□ -1.24
VPS28-211ENST00000530790 A0A0G2JQZ4 141 aa7.31□□□□□ -1.24
VPS28-211ENST00000530790 hADV29S1A0JD25 119 aa7.31□□□□□ -1.24
VPS28-211ENST00000530790 COX8AP10176 69 aa7.31□□□□□ -1.24
VPS28-211ENST00000530790 Q6ZQY7 126 aa7.31□□□□□ -1.24
VPS28-211ENST00000530790 C9orf92A6NGG3 77 aa7.3□□□□□ -1.24
VPS28-211ENST00000530790 BVES-AS1Q5T3Y7 98 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms