RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 NOTCH1P46531 2555 aa1.69□□□□□ -2.14
CD44-229ENST00000528672 SHANK1Q9Y566 2161 aa1.69□□□□□ -2.14
CD44-229ENST00000528672 IGSF10Q6WRI0 2623 aa1.69□□□□□ -2.14
CD44-229ENST00000528672 A0A0G2JMZ2 1700 aa1.69□□□□□ -2.14
CD44-229ENST00000528672 LRRC37A2A6NM11 1700 aa1.69□□□□□ -2.14
CD44-229ENST00000528672 LRRC37AA6NMS7 1700 aa1.69□□□□□ -2.14
CD44-229ENST00000528672 C4BP0C0L5 1744 aa1.69□□□□□ -2.14
CD44-229ENST00000528672 NBDYA0A0U1RRE5 68 aa1.68□□□□□ -2.14
CD44-229ENST00000528672 DEFB114Q30KQ6 69 aa1.68□□□□□ -2.14
CD44-229ENST00000528672 PSORS1C2Q9UIG4 136 aa1.68□□□□□ -2.14
CD44-229ENST00000528672 COL5A1P20908 1838 aaPredicted RBP1.68□□□□□ -2.14
CD44-229ENST00000528672 CEP290O15078 2479 aa1.67□□□□□ -2.14
CD44-229ENST00000528672 SPTAN1Q13813 2472 aaKnown RBP1.67□□□□□ -2.14
CD44-229ENST00000528672 RYR3Q15413 4870 aa1.67□□□□□ -2.14
CD44-229ENST00000528672 RELNP78509 3460 aa1.67□□□□□ -2.14
CD44-229ENST00000528672 HYDINQ4G0P3 5121 aa1.67□□□□□ -2.14
CD44-229ENST00000528672 LOC110117498A0A087WWA1 95 aa1.67□□□□□ -2.14
CD44-229ENST00000528672 H0YGX0 51 aa1.67□□□□□ -2.14
CD44-229ENST00000528672 NDUFA4O00483 81 aa1.67□□□□□ -2.14
CD44-229ENST00000528672 DEFB112Q30KQ8 113 aa1.67□□□□□ -2.14
CD44-229ENST00000528672 COA5Q86WW8 74 aa1.67□□□□□ -2.14
CD44-229ENST00000528672 C4orf3Q8WVX3 66 aa1.67□□□□□ -2.14
CD44-229ENST00000528672 VWFP04275 2813 aa1.67□□□□□ -2.14
CD44-229ENST00000528672 ARFGEF3Q5TH69 2177 aa1.66□□□□□ -2.14
CD44-229ENST00000528672 ABCA4P78363 2273 aa1.66□□□□□ -2.14
CD44-229ENST00000528672 NCR3O14931 201 aa1.66□□□□□ -2.14
CD44-229ENST00000528672 RPL38P63173 70 aaKnown RBP1.66□□□□□ -2.14
CD44-229ENST00000528672 HAMPP81172 84 aa1.66□□□□□ -2.14
CD44-229ENST00000528672 TFF3Q07654 80 aa1.66□□□□□ -2.14
CD44-229ENST00000528672 Q6ZTI0 123 aa1.66□□□□□ -2.14
CD44-229ENST00000528672 Q96NJ1 140 aa1.66□□□□□ -2.14
CD44-229ENST00000528672 CCL26Q9Y258 94 aa1.66□□□□□ -2.14
CD44-229ENST00000528672 ASPMQ8IZT6 3477 aa1.66□□□□□ -2.14
CD44-229ENST00000528672 LAMA3Q16787 3333 aa1.66□□□□□ -2.14
CD44-229ENST00000528672 HTTP42858 3142 aa1.66□□□□□ -2.14
CD44-229ENST00000528672 TLN1Q9Y490 2541 aaKnown RBP1.66□□□□□ -2.14
CD44-229ENST00000528672 SDK1Q7Z5N4 2213 aa1.66□□□□□ -2.14
CD44-229ENST00000528672 PIEZO2Q9H5I5 2752 aa1.65□□□□□ -2.14
CD44-229ENST00000528672 DOCK10Q96BY6 2186 aa1.65□□□□□ -2.14
CD44-229ENST00000528672 COL4A5P29400 1685 aa1.65□□□□□ -2.15
CD44-229ENST00000528672 CEP250Q9BV73 2442 aa1.65□□□□□ -2.15
CD44-229ENST00000528672 IGKV2-40A0A087WW87 121 aaPredicted RBP1.65□□□□□ -2.15
CD44-229ENST00000528672 ETDCA0A1B0GVM5 59 aa1.65□□□□□ -2.15
CD44-229ENST00000528672 TRBV6-4A0A1B0GX49 114 aa1.65□□□□□ -2.15
CD44-229ENST00000528672 IGKV2D-40P01614 121 aaPredicted RBP1.65□□□□□ -2.15
CD44-229ENST00000528672 IGKV4-1P06312 121 aa1.65□□□□□ -2.15
CD44-229ENST00000528672 KCNQ1DNQ9H478 68 aa1.65□□□□□ -2.15
CD44-229ENST00000528672 RYR1P21817 5038 aa1.65□□□□□ -2.15
CD44-229ENST00000528672 PLXNB2O15031 1838 aa1.65□□□□□ -2.15
CD44-229ENST00000528672 PCNX1Q96RV3 2341 aa1.65□□□□□ -2.15
CD44-229ENST00000528672 NBEAL1Q6ZS30 2694 aa1.64□□□□□ -2.15
CD44-229ENST00000528672 FN1P02751 2386 aaKnown RBP1.64□□□□□ -2.15
CD44-229ENST00000528672 PRUNE2Q8WUY3 3088 aa1.64□□□□□ -2.15
CD44-229ENST00000528672 FREM1Q5H8C1 2179 aa1.64□□□□□ -2.15
CD44-229ENST00000528672 TRGV2A0A075B6R0 118 aa1.64□□□□□ -2.15
CD44-229ENST00000528672 CPSF4LA6NMK7 179 aaKnown RBP1.64□□□□□ -2.15
CD44-229ENST00000528672 IAPPP10997 89 aa1.64□□□□□ -2.15
CD44-229ENST00000528672 KRTAP10-10P60014 251 aa1.64□□□□□ -2.15
CD44-229ENST00000528672 TPRXLQ17RH7 258 aa1.64□□□□□ -2.15
CD44-229ENST00000528672 PP632Q6XCG6 107 aa1.64□□□□□ -2.15
CD44-229ENST00000528672 C5orf56Q8N8D9 126 aa1.64□□□□□ -2.15
CD44-229ENST00000528672 ARHGAP5-AS1Q96IT6 56 aa1.64□□□□□ -2.15
CD44-229ENST00000528672 SPAG17Q6Q759 2223 aa1.64□□□□□ -2.15
CD44-229ENST00000528672 FLNAP21333 2647 aaKnown RBP1.64□□□□□ -2.15
CD44-229ENST00000528672 RP1P56715 2156 aa1.64□□□□□ -2.15
CD44-229ENST00000528672 MUC2Q02817 5179 aa1.63□□□□□ -2.15
CD44-229ENST00000528672 ANKHD1Q8IWZ3 2542 aaKnown RBP1.63□□□□□ -2.15
CD44-229ENST00000528672 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.63□□□□□ -2.15
CD44-229ENST00000528672 TRGV1A0A0A0MS02 117 aa1.63□□□□□ -2.15
CD44-229ENST00000528672 A0A0G2JQZ4 141 aa1.63□□□□□ -2.15
CD44-229ENST00000528672 IGKV2-29A2NJV5 120 aaPredicted RBP1.63□□□□□ -2.15
CD44-229ENST00000528672 BRD3OSQ6XYD6 125 aa1.63□□□□□ -2.15
CD44-229ENST00000528672 STAB1Q9NY15 2570 aa1.63□□□□□ -2.15
CD44-229ENST00000528672 UNC13CQ8NB66 2214 aa1.63□□□□□ -2.15
CD44-229ENST00000528672 LRRK2Q5S007 2527 aa1.63□□□□□ -2.15
CD44-229ENST00000528672 COX7BP24311 80 aa1.62□□□□□ -2.15
CD44-229ENST00000528672 RPL37AP61513 92 aaKnown RBP1.62□□□□□ -2.15
CD44-229ENST00000528672 COX17Q14061 63 aa1.62□□□□□ -2.15
CD44-229ENST00000528672 SPACA4Q8TDM5 124 aa1.62□□□□□ -2.15
CD44-229ENST00000528672 TENM4Q6N022 2769 aa1.62□□□□□ -2.15
CD44-229ENST00000528672 CEP192Q8TEP8 1941 aa1.62□□□□□ -2.15
CD44-229ENST00000528672 NF1P21359 2839 aa1.61□□□□□ -2.15
CD44-229ENST00000528672 A0A1B0GU69 56 aa1.61□□□□□ -2.15
CD44-229ENST00000528672 CRIP1P50238 77 aa1.61□□□□□ -2.15
CD44-229ENST00000528672 FXYD4P59646 89 aa1.61□□□□□ -2.15
CD44-229ENST00000528672 LINC01590Q5TEZ4 76 aa1.61□□□□□ -2.15
CD44-229ENST00000528672 CNFNQ9BYD5 112 aa1.61□□□□□ -2.15
CD44-229ENST00000528672 TTTY10Q9BZA0 68 aa1.61□□□□□ -2.15
CD44-229ENST00000528672 FLNCQ14315 2725 aa1.61□□□□□ -2.15
CD44-229ENST00000528672 ATRQ13535 2644 aa1.61□□□□□ -2.15
CD44-229ENST00000528672 PTPRZ1P23471 2315 aaPredicted RBP1.61□□□□□ -2.15
CD44-229ENST00000528672 EPPK1P58107 5090 aaKnown RBP1.6□□□□□ -2.15
CD44-229ENST00000528672 LINC00308Q8TCZ7 52 aa1.6□□□□□ -2.15
CD44-229ENST00000528672 SMIM2Q9BVW6 85 aa1.6□□□□□ -2.15
CD44-229ENST00000528672 TNCP24821 2201 aa1.6□□□□□ -2.15
CD44-229ENST00000528672 GOLGA4Q13439 2230 aaKnown RBP1.6□□□□□ -2.15
CD44-229ENST00000528672 TNRC6CQ9HCJ0 1690 aaKnown RBP1.6□□□□□ -2.15
CD44-229ENST00000528672 NCOR1O75376 2440 aa1.6□□□□□ -2.15
CD44-229ENST00000528672 BOD1L1Q8NFC6 3051 aa1.59□□□□□ -2.16
CD44-229ENST00000528672 SPTA1P02549 2419 aa1.59□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms