RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 PRR4Q16378 134 aa3.86□□□□□ -1.79
CD44-225ENST00000527326 C18orf65Q6ZTR6 163 aa3.86□□□□□ -1.79
CD44-225ENST00000527326 C5orf56Q8N8D9 126 aa3.86□□□□□ -1.79
CD44-225ENST00000527326 SPTBN1Q01082 2364 aaKnown RBP3.86□□□□□ -1.79
CD44-225ENST00000527326 LRRK2Q5S007 2527 aa3.86□□□□□ -1.79
CD44-225ENST00000527326 SETD2Q9BYW2 2564 aaPredicted RBP3.86□□□□□ -1.79
CD44-225ENST00000527326 ICE1Q9Y2F5 2266 aa3.86□□□□□ -1.79
CD44-225ENST00000527326 MED13Q9UHV7 2174 aa3.85□□□□□ -1.79
CD44-225ENST00000527326 IGHV4-28A0A0C4DH34 117 aa3.85□□□□□ -1.79
CD44-225ENST00000527326 C10orf25Q5T742 122 aa3.85□□□□□ -1.79
CD44-225ENST00000527326 ITPR2Q14571 2701 aa3.85□□□□□ -1.79
CD44-225ENST00000527326 DNAJC13O75165 2243 aa3.85□□□□□ -1.79
CD44-225ENST00000527326 IGHV4-61A0A0C4DH41 118 aa3.84□□□□□ -1.79
CD44-225ENST00000527326 CNBPP62633 177 aaKnown RBP3.84□□□□□ -1.79
CD44-225ENST00000527326 PRR3P79522 188 aaKnown RBP3.84□□□□□ -1.79
CD44-225ENST00000527326 SPAG11BQ08648 103 aa3.84□□□□□ -1.79
CD44-225ENST00000527326 COA5Q86WW8 74 aa3.84□□□□□ -1.79
CD44-225ENST00000527326 ST20-AS1Q8NBB2 130 aa3.84□□□□□ -1.79
CD44-225ENST00000527326 USP9YO00507 2555 aaPredicted RBP3.84□□□□□ -1.8
CD44-225ENST00000527326 TRGV4A0A0C4DH28 118 aa3.83□□□□□ -1.8
CD44-225ENST00000527326 A0A1W2PNU3 283 aaPredicted RBP3.83□□□□□ -1.8
CD44-225ENST00000527326 INSP01308 110 aa3.83□□□□□ -1.8
CD44-225ENST00000527326 PRAC1Q96KF2 57 aa3.83□□□□□ -1.8
CD44-225ENST00000527326 CENPEQ02224 2701 aa3.83□□□□□ -1.8
CD44-225ENST00000527326 LRBAP50851 2863 aa3.83□□□□□ -1.8
CD44-225ENST00000527326 BOD1L1Q8NFC6 3051 aa3.82□□□□□ -1.8
CD44-225ENST00000527326 FBN3Q75N90 2809 aa3.82□□□□□ -1.8
CD44-225ENST00000527326 TLN1Q9Y490 2541 aaKnown RBP3.82□□□□□ -1.8
CD44-225ENST00000527326 LINC00959A0A1B0GUT2 108 aa3.82□□□□□ -1.8
CD44-225ENST00000527326 PRB2P02812 416 aaPredicted RBP3.82□□□□□ -1.8
CD44-225ENST00000527326 HTN1P15515 57 aa3.82□□□□□ -1.8
CD44-225ENST00000527326 DSCR9P59020 149 aa3.82□□□□□ -1.8
CD44-225ENST00000527326 KRTAP21-3Q3LHN1 58 aa3.82□□□□□ -1.8
CD44-225ENST00000527326 KLK12Q9UKR0 248 aa3.82□□□□□ -1.8
CD44-225ENST00000527326 NBASA2RRP1 2371 aa3.81□□□□□ -1.8
CD44-225ENST00000527326 AKAP9Q99996 3911 aa3.81□□□□□ -1.8
CD44-225ENST00000527326 DEFB109BQ30KR1 87 aa3.81□□□□□ -1.8
CD44-225ENST00000527326 ODF3L2Q3SX64 289 aa3.81□□□□□ -1.8
CD44-225ENST00000527326 RETNLBQ9BQ08 111 aa3.81□□□□□ -1.8
CD44-225ENST00000527326 RP1L1Q8IWN7 2480 aaPredicted RBP3.81□□□□□ -1.8
CD44-225ENST00000527326 IGLV5-48A0A075B6I7 105 aa3.8□□□□□ -1.8
CD44-225ENST00000527326 IGLV7-46A0A075B6I9 117 aa3.8□□□□□ -1.8
CD44-225ENST00000527326 IGKV3OR2-268A0A0C4DH90 116 aa3.8□□□□□ -1.8
CD44-225ENST00000527326 C9orf163Q8N9P6 203 aa3.8□□□□□ -1.8
CD44-225ENST00000527326 ZNF706Q9Y5V0 76 aaPredicted RBP3.8□□□□□ -1.8
CD44-225ENST00000527326 NF1P21359 2839 aa3.8□□□□□ -1.8
CD44-225ENST00000527326 HIVEP3Q5T1R4 2406 aa3.79□□□□□ -1.8
CD44-225ENST00000527326 LYNX1G3V0Z9 82 aa3.79□□□□□ -1.8
CD44-225ENST00000527326 H0Y9P7 68 aa3.79□□□□□ -1.8
CD44-225ENST00000527326 LYNX1P0DP58 116 aa3.79□□□□□ -1.8
CD44-225ENST00000527326 SPINK7P58062 85 aa3.79□□□□□ -1.8
CD44-225ENST00000527326 DSCR10P59022 87 aa3.79□□□□□ -1.8
CD44-225ENST00000527326 FBXL19-AS1Q494R0 122 aa3.79□□□□□ -1.8
CD44-225ENST00000527326 PLCE1Q9P212 2302 aa3.78□□□□□ -1.8
CD44-225ENST00000527326 TRGV1A0A0A0MS02 117 aa3.78□□□□□ -1.8
CD44-225ENST00000527326 A0A1B0GUV1 79 aa3.78□□□□□ -1.8
CD44-225ENST00000527326 K7EQZ3 153 aa3.78□□□□□ -1.8
CD44-225ENST00000527326 RTL8CO15255 209 aa3.78□□□□□ -1.8
CD44-225ENST00000527326 DEFB112Q30KQ8 113 aa3.78□□□□□ -1.8
CD44-225ENST00000527326 KPRPQ5T749 579 aaPredicted RBP3.78□□□□□ -1.8
CD44-225ENST00000527326 Q8NAQ8 132 aa3.78□□□□□ -1.8
CD44-225ENST00000527326 Q8NBF4 154 aa3.78□□□□□ -1.8
CD44-225ENST00000527326 Q8NDZ9 215 aa3.78□□□□□ -1.8
CD44-225ENST00000527326 MAP6D1Q9H9H5 199 aa3.78□□□□□ -1.8
CD44-225ENST00000527326 MED13LQ71F56 2210 aa3.78□□□□□ -1.8
CD44-225ENST00000527326 F8P00451 2351 aa3.77□□□□□ -1.81
CD44-225ENST00000527326 IGKV2D-24A0A075B6R9 120 aa3.77□□□□□ -1.81
CD44-225ENST00000527326 IGHV6-1A0A0B4J1U7 121 aa3.77□□□□□ -1.81
CD44-225ENST00000527326 IGLV1-51P01701 117 aa3.77□□□□□ -1.81
CD44-225ENST00000527326 SPRR4Q96PI1 79 aa3.77□□□□□ -1.81
CD44-225ENST00000527326 GVQW2A0A096LPI5 108 aaPredicted RBP3.76□□□□□ -1.81
CD44-225ENST00000527326 A0A0J9YWU9 116 aa3.76□□□□□ -1.81
CD44-225ENST00000527326 A0A1W2PNM2 257 aa3.76□□□□□ -1.81
CD44-225ENST00000527326 DEFB131AP59861 70 aa3.76□□□□□ -1.81
CD44-225ENST00000527326 ATP1A1-AS1Q5TC04 95 aa3.76□□□□□ -1.81
CD44-225ENST00000527326 CRYBG3Q68DQ2 2970 aa3.76□□□□□ -1.81
CD44-225ENST00000527326 CELSR1Q9NYQ6 3014 aa3.76□□□□□ -1.81
CD44-225ENST00000527326 CELSR2Q9HCU4 2923 aa3.75□□□□□ -1.81
CD44-225ENST00000527326 MTORP42345 2549 aa3.75□□□□□ -1.81
CD44-225ENST00000527326 B4DSR2 109 aa3.75□□□□□ -1.81
CD44-225ENST00000527326 KRTAP10-11P60412 298 aa3.75□□□□□ -1.81
CD44-225ENST00000527326 SPAG11AQ6PDA7 123 aa3.75□□□□□ -1.81
CD44-225ENST00000527326 ADM2Q7Z4H4 148 aa3.75□□□□□ -1.81
CD44-225ENST00000527326 ZNF702PQ9H963 129 aa3.75□□□□□ -1.81
CD44-225ENST00000527326 CSMD2Q7Z408 3487 aa3.75□□□□□ -1.81
CD44-225ENST00000527326 PCNX1Q96RV3 2341 aa3.75□□□□□ -1.81
CD44-225ENST00000527326 OTOGQ6ZRI0 2925 aa3.74□□□□□ -1.81
CD44-225ENST00000527326 ADGRG4Q8IZF6 3080 aa3.74□□□□□ -1.81
CD44-225ENST00000527326 NOTCH2NLQ7Z3S9 236 aa3.74□□□□□ -1.81
CD44-225ENST00000527326 KRTAP29-1A8MX34 341 aaPredicted RBP3.73□□□□□ -1.81
CD44-225ENST00000527326 C1orf137Q5JT78 98 aa3.73□□□□□ -1.81
CD44-225ENST00000527326 SPG11Q96JI7 2443 aa3.73□□□□□ -1.81
CD44-225ENST00000527326 HIVEP1P15822 2718 aa3.72□□□□□ -1.81
CD44-225ENST00000527326 PDZD2O15018 2839 aa3.72□□□□□ -1.81
CD44-225ENST00000527326 ABCA4P78363 2273 aa3.72□□□□□ -1.81
CD44-225ENST00000527326 A6NDX4 124 aa3.72□□□□□ -1.81
CD44-225ENST00000527326 DNAJC9-AS1A6NH13 148 aa3.72□□□□□ -1.81
CD44-225ENST00000527326 WFDC13Q8IUB5 93 aa3.72□□□□□ -1.81
CD44-225ENST00000527326 CHCHD10Q8WYQ3 142 aaPredicted RBP3.72□□□□□ -1.81
CD44-225ENST00000527326 C16orf74Q96GX8 76 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms