RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 C4orf3Q8WVX3 66 aa2.66□□□□□ -1.98
CD44-220ENST00000525688 Q9BRP9 147 aa2.66□□□□□ -1.98
CD44-220ENST00000525688 FXYD6Q9H0Q3 95 aa2.66□□□□□ -1.98
CD44-220ENST00000525688 CDC42SE1Q9NRR8 79 aa2.66□□□□□ -1.98
CD44-220ENST00000525688 NBEAL2Q6ZNJ1 2754 aa2.65□□□□□ -1.99
CD44-220ENST00000525688 MUC21A0A140T8X8 626 aa2.65□□□□□ -1.99
CD44-220ENST00000525688 H3BUA1 57 aa2.65□□□□□ -1.99
CD44-220ENST00000525688 MOBPQ13875 183 aa2.65□□□□□ -1.99
CD44-220ENST00000525688 WFDC2Q14508 124 aa2.65□□□□□ -1.99
CD44-220ENST00000525688 KLK9Q2XQG4 91 aa2.65□□□□□ -1.99
CD44-220ENST00000525688 DEFB136Q30KP8 78 aa2.65□□□□□ -1.99
CD44-220ENST00000525688 NMSQ5H8A3 153 aa2.65□□□□□ -1.99
CD44-220ENST00000525688 C10orf55Q5SWW7 151 aa2.65□□□□□ -1.99
CD44-220ENST00000525688 LYPD5Q6UWN5 251 aa2.65□□□□□ -1.99
CD44-220ENST00000525688 CMTM2Q8TAZ6 248 aa2.65□□□□□ -1.99
CD44-220ENST00000525688 PRO0461Q9UI25 63 aa2.65□□□□□ -1.99
CD44-220ENST00000525688 KLK9Q9UKQ9 250 aa2.65□□□□□ -1.99
CD44-220ENST00000525688 V9GYH0 126 aa2.65□□□□□ -1.99
CD44-220ENST00000525688 DNAH9Q9NYC9 4486 aa2.65□□□□□ -1.99
CD44-220ENST00000525688 TRBV7-1A0A0A6YYK4 115 aa2.64□□□□□ -1.99
CD44-220ENST00000525688 A0A1W2PNM2 257 aa2.64□□□□□ -1.99
CD44-220ENST00000525688 C2orf70A6NJV1 201 aa2.64□□□□□ -1.99
CD44-220ENST00000525688 APELAP0DMC3 54 aa2.64□□□□□ -1.99
CD44-220ENST00000525688 USMG5Q96IX5 58 aa2.64□□□□□ -1.99
CD44-220ENST00000525688 NXT2Q9NPJ8 142 aaKnown RBP2.64□□□□□ -1.99
CD44-220ENST00000525688 TMEM14BQ9NUH8 114 aa2.64□□□□□ -1.99
CD44-220ENST00000525688 PRO2289Q9P1D8 64 aa2.64□□□□□ -1.99
CD44-220ENST00000525688 C22orf24Q9Y442 160 aa2.64□□□□□ -1.99
CD44-220ENST00000525688 FAM223BA6NKX1 122 aa2.63□□□□□ -1.99
CD44-220ENST00000525688 H7BZZ5 65 aa2.63□□□□□ -1.99
CD44-220ENST00000525688 SIX6O95475 246 aa2.63□□□□□ -1.99
CD44-220ENST00000525688 PRH1P02810 166 aa2.63□□□□□ -1.99
CD44-220ENST00000525688 WT1-ASQ06250 92 aa2.63□□□□□ -1.99
CD44-220ENST00000525688 PYDC2Q56P42 97 aa2.63□□□□□ -1.99
CD44-220ENST00000525688 CYP2G1PQ6ZSU1 146 aa2.63□□□□□ -1.99
CD44-220ENST00000525688 FAM223AQ8IWN6 122 aa2.63□□□□□ -1.99
CD44-220ENST00000525688 LINC01600Q96MT4 127 aa2.63□□□□□ -1.99
CD44-220ENST00000525688 NDUFA4L2Q9NRX3 87 aa2.63□□□□□ -1.99
CD44-220ENST00000525688 TENM3Q9P273 2699 aa2.62□□□□□ -1.99
CD44-220ENST00000525688 IGHV3-33P01772 117 aa2.62□□□□□ -1.99
CD44-220ENST00000525688 PDE6HQ13956 83 aa2.62□□□□□ -1.99
CD44-220ENST00000525688 TOMM5Q8N4H5 51 aa2.62□□□□□ -1.99
CD44-220ENST00000525688 HIGD1BQ9P298 99 aa2.62□□□□□ -1.99
CD44-220ENST00000525688 STAB2Q8WWQ8 2551 aa2.62□□□□□ -1.99
CD44-220ENST00000525688 SORL1Q92673 2214 aa2.61□□□□□ -1.99
CD44-220ENST00000525688 KANTRA0A1W2PQU2 76 aa2.61□□□□□ -1.99
CD44-220ENST00000525688 H3BUT2 72 aa2.61□□□□□ -1.99
CD44-220ENST00000525688 K7EIL1 84 aa2.61□□□□□ -1.99
CD44-220ENST00000525688 K7EIM0 57 aa2.61□□□□□ -1.99
CD44-220ENST00000525688 UBE2D3P61077 147 aa2.61□□□□□ -1.99
CD44-220ENST00000525688 UBE2D2P62837 147 aa2.61□□□□□ -1.99
CD44-220ENST00000525688 PRCDQ00LT1 54 aa2.61□□□□□ -1.99
CD44-220ENST00000525688 SPATA45Q537H7 98 aa2.61□□□□□ -1.99
CD44-220ENST00000525688 LYPD1Q8N2G4 141 aa2.61□□□□□ -1.99
CD44-220ENST00000525688 C18orf32Q8TCD1 76 aa2.61□□□□□ -1.99
CD44-220ENST00000525688 FAM167A-AS1Q96KT0 104 aa2.61□□□□□ -1.99
CD44-220ENST00000525688 ODF3Q96PU9 254 aa2.61□□□□□ -1.99
CD44-220ENST00000525688 TIMM21Q9BVV7 248 aa2.61□□□□□ -1.99
CD44-220ENST00000525688 KMT2CQ8NEZ4 4911 aaKnown RBP2.61□□□□□ -1.99
CD44-220ENST00000525688 HUWE1Q7Z6Z7 4374 aaKnown RBP2.61□□□□□ -1.99
CD44-220ENST00000525688 TRAV12-3A0A0B4J271 114 aa2.6□□□□□ -1.99
CD44-220ENST00000525688 I3L2K1 104 aa2.6□□□□□ -1.99
CD44-220ENST00000525688 BCE1O60756 84 aa2.6□□□□□ -1.99
CD44-220ENST00000525688 HRES1P13985 223 aa2.6□□□□□ -1.99
CD44-220ENST00000525688 CNBPP62633 177 aaKnown RBP2.6□□□□□ -1.99
CD44-220ENST00000525688 SPINK9Q5DT21 86 aa2.6□□□□□ -1.99
CD44-220ENST00000525688 Q6ZTI0 123 aa2.6□□□□□ -1.99
CD44-220ENST00000525688 IFI27L1Q96BM0 104 aa2.6□□□□□ -1.99
CD44-220ENST00000525688 MANBALQ9NQG1 85 aa2.6□□□□□ -1.99
CD44-220ENST00000525688 TRBV10-1A0A0K0K1A3 114 aa2.59□□□□□ -1.99
CD44-220ENST00000525688 F2Z2F3 143 aa2.59□□□□□ -1.99
CD44-220ENST00000525688 CTSGP08311 255 aa2.59□□□□□ -1.99
CD44-220ENST00000525688 KLKP1Q107X0 134 aa2.59□□□□□ -1.99
CD44-220ENST00000525688 DEFB114Q30KQ6 69 aa2.59□□□□□ -1.99
CD44-220ENST00000525688 C1orf137Q5JT78 98 aa2.59□□□□□ -1.99
CD44-220ENST00000525688 MRPL36Q9P0J6 103 aaKnown RBP2.59□□□□□ -1.99
CD44-220ENST00000525688 PRO1854Q9UHT4 67 aa2.59□□□□□ -1.99
CD44-220ENST00000525688 RYR3Q15413 4870 aa2.58□□□□□ -2
CD44-220ENST00000525688 TRBV7-3A0A075B6L6 115 aa2.58□□□□□ -2
CD44-220ENST00000525688 TRAV23DV6A0A075B6W5 121 aa2.58□□□□□ -2
CD44-220ENST00000525688 CEBPZOSA8MTT3 80 aa2.58□□□□□ -2
CD44-220ENST00000525688 NDUFA4O00483 81 aa2.58□□□□□ -2
CD44-220ENST00000525688 RTL8CO15255 209 aa2.58□□□□□ -2
CD44-220ENST00000525688 PMCHL1Q16048 86 aa2.58□□□□□ -2
CD44-220ENST00000525688 DEFB121Q5J5C9 76 aa2.58□□□□□ -2
CD44-220ENST00000525688 CSAG1Q6PB30 78 aa2.58□□□□□ -2
CD44-220ENST00000525688 DNAH7Q8WXX0 4024 aa2.58□□□□□ -2
CD44-220ENST00000525688 TRAV22A0A0B4J277 110 aa2.57□□□□□ -2
CD44-220ENST00000525688 TEX49A0A1B0GTD5 131 aa2.57□□□□□ -2
CD44-220ENST00000525688 SPRR5A0A1B0GTR4 108 aa2.57□□□□□ -2
CD44-220ENST00000525688 IGKV1-17P01599 117 aa2.57□□□□□ -2
CD44-220ENST00000525688 UBE2D1P51668 147 aa2.57□□□□□ -2
CD44-220ENST00000525688 CFAP126Q5VTH2 177 aa2.57□□□□□ -2
CD44-220ENST00000525688 Q5VV11 94 aa2.57□□□□□ -2
CD44-220ENST00000525688 LINC00322Q6ZN03 302 aaPredicted RBP2.57□□□□□ -2
CD44-220ENST00000525688 TENM2Q9NT68 2774 aa2.57□□□□□ -2
CD44-220ENST00000525688 STARD9Q9P2P6 4700 aa2.57□□□□□ -2
CD44-220ENST00000525688 RYR2Q92736 4967 aa2.57□□□□□ -2
CD44-220ENST00000525688 PLECQ15149 4684 aaKnown RBP2.56□□□□□ -2
CD44-220ENST00000525688 ACYP1P07311 99 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms