RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 AVPP01185 164 aa6.11□□□□□ -1.43
LIMCH1-218ENST00000513024 C6orf223Q8N319 242 aa6.11□□□□□ -1.43
LIMCH1-218ENST00000513024 FAM218AQ96MZ4 157 aa6.11□□□□□ -1.43
LIMCH1-218ENST00000513024 KIAA0087Q14695 138 aa6.1□□□□□ -1.43
LIMCH1-218ENST00000513024 SMCR5Q8TEV8 140 aa6.1□□□□□ -1.43
LIMCH1-218ENST00000513024 C16orf90A8MZG2 172 aa6.1□□□□□ -1.43
LIMCH1-218ENST00000513024 LUZP6Q538Z0 58 aa6.09□□□□□ -1.43
LIMCH1-218ENST00000513024 SPTBN4Q9H254 2564 aa6.09□□□□□ -1.43
LIMCH1-218ENST00000513024 KRTAP24-1Q3LI83 254 aa6.09□□□□□ -1.43
LIMCH1-218ENST00000513024 CDC42SE1Q9NRR8 79 aa6.09□□□□□ -1.43
LIMCH1-218ENST00000513024 CDSNQ15517 529 aa6.08□□□□□ -1.44
LIMCH1-218ENST00000513024 IGLV5-39A0A0G2JS06 123 aa6.08□□□□□ -1.44
LIMCH1-218ENST00000513024 BOD1L1Q8NFC6 3051 aa6.08□□□□□ -1.44
LIMCH1-218ENST00000513024 Q8NBF4 154 aa6.07□□□□□ -1.44
LIMCH1-218ENST00000513024 ACANP16112 2415 aa6.07□□□□□ -1.44
LIMCH1-218ENST00000513024 FHL3Q13643 280 aa6.07□□□□□ -1.44
LIMCH1-218ENST00000513024 KIF25-AS1Q9Y6Z4 181 aa6.06□□□□□ -1.44
LIMCH1-218ENST00000513024 LINC01546A6NGU7 62 aa6.05□□□□□ -1.44
LIMCH1-218ENST00000513024 DMXL2Q8TDJ6 3036 aa6.05□□□□□ -1.44
LIMCH1-218ENST00000513024 TRBV7-4A0A0J9YYF1 115 aa6.05□□□□□ -1.44
LIMCH1-218ENST00000513024 POLQO75417 2590 aa6.04□□□□□ -1.44
LIMCH1-218ENST00000513024 ADGRG4Q8IZF6 3080 aa6.04□□□□□ -1.44
LIMCH1-218ENST00000513024 A0A1B0GUV1 79 aa6.04□□□□□ -1.44
LIMCH1-218ENST00000513024 BRI3O95415 125 aa6.03□□□□□ -1.44
LIMCH1-218ENST00000513024 RAI1Q7Z5J4 1906 aaPredicted RBP6.03□□□□□ -1.44
LIMCH1-218ENST00000513024 COL27A1Q8IZC6 1860 aaPredicted RBP6.02□□□□□ -1.45
LIMCH1-218ENST00000513024 ZZEF1O43149 2961 aa6.02□□□□□ -1.45
LIMCH1-218ENST00000513024 A0A0A0MQY5 61 aa6.02□□□□□ -1.45
LIMCH1-218ENST00000513024 LINC00315P59091 139 aa6.01□□□□□ -1.45
LIMCH1-218ENST00000513024 Q6ZRU5 148 aa6.01□□□□□ -1.45
LIMCH1-218ENST00000513024 SPENQ96T58 3664 aaKnown RBP6.01□□□□□ -1.45
LIMCH1-218ENST00000513024 AKAP13Q12802 2813 aa6.01□□□□□ -1.45
LIMCH1-218ENST00000513024 IGHV3OR16-9A0A0B4J2B5 98 aa6□□□□□ -1.45
LIMCH1-218ENST00000513024 A8MWP4 228 aa6□□□□□ -1.45
LIMCH1-218ENST00000513024 FASNP49327 2511 aaKnown RBP6□□□□□ -1.45
LIMCH1-218ENST00000513024 MOBPQ13875 183 aa6□□□□□ -1.45
LIMCH1-218ENST00000513024 A0A1W2PPR1 153 aa5.99□□□□□ -1.45
LIMCH1-218ENST00000513024 LYPD5Q6UWN5 251 aa5.99□□□□□ -1.45
LIMCH1-218ENST00000513024 ATMQ13315 3056 aa5.99□□□□□ -1.45
LIMCH1-218ENST00000513024 Q1T7F1 81 aa5.98□□□□□ -1.45
LIMCH1-218ENST00000513024 LINC01556Q5JQF7 62 aa5.98□□□□□ -1.45
LIMCH1-218ENST00000513024 C9orf129Q5T035 196 aaKnown RBP5.98□□□□□ -1.45
LIMCH1-218ENST00000513024 APLNQ9ULZ1 77 aa5.98□□□□□ -1.45
LIMCH1-218ENST00000513024 IGLV5-45A0A087WSX0 123 aa5.98□□□□□ -1.45
LIMCH1-218ENST00000513024 LINC00476Q8WZB0 136 aa5.98□□□□□ -1.45
LIMCH1-218ENST00000513024 TACC2O95359 2948 aa5.97□□□□□ -1.45
LIMCH1-218ENST00000513024 C22orf24Q9Y442 160 aa5.97□□□□□ -1.45
LIMCH1-218ENST00000513024 EPM2AB3EWF7 344 aa5.97□□□□□ -1.45
LIMCH1-218ENST00000513024 K7EQZ3 153 aa5.97□□□□□ -1.45
LIMCH1-218ENST00000513024 USP24Q9UPU5 2620 aa5.97□□□□□ -1.45
LIMCH1-218ENST00000513024 RPL37AP61513 92 aaKnown RBP5.95□□□□□ -1.46
LIMCH1-218ENST00000513024 SPANXA2-OT1Q8N9U9 137 aa5.94□□□□□ -1.46
LIMCH1-218ENST00000513024 KALRNO60229 2985 aa5.94□□□□□ -1.46
LIMCH1-218ENST00000513024 LINC00313P59037 77 aa5.93□□□□□ -1.46
LIMCH1-218ENST00000513024 MRPL34Q9BQ48 92 aaKnown RBP5.93□□□□□ -1.46
LIMCH1-218ENST00000513024 H3BNG1 76 aa5.92□□□□□ -1.46
LIMCH1-218ENST00000513024 NBDYA0A0U1RRE5 68 aa5.92□□□□□ -1.46
LIMCH1-218ENST00000513024 Q5XG85 94 aa5.92□□□□□ -1.46
LIMCH1-218ENST00000513024 LINC00167Q96N53 147 aa5.92□□□□□ -1.46
LIMCH1-218ENST00000513024 Q6ZRX8 168 aa5.92□□□□□ -1.46
LIMCH1-218ENST00000513024 SMG1Q96Q15 3661 aaKnown RBP5.91□□□□□ -1.46
LIMCH1-218ENST00000513024 LITAFQ99732 161 aa5.91□□□□□ -1.46
LIMCH1-218ENST00000513024 COX6B2Q6YFQ2 88 aa5.9□□□□□ -1.46
LIMCH1-218ENST00000513024 Q6ZRP5 223 aa5.9□□□□□ -1.47
LIMCH1-218ENST00000513024 PRAC1Q96KF2 57 aa5.89□□□□□ -1.47
LIMCH1-218ENST00000513024 SPACA4Q8TDM5 124 aa5.89□□□□□ -1.47
LIMCH1-218ENST00000513024 BSNQ9UPA5 3926 aa5.89□□□□□ -1.47
LIMCH1-218ENST00000513024 MAP1AP78559 2803 aaPredicted RBP5.88□□□□□ -1.47
LIMCH1-218ENST00000513024 Q75L30 129 aa5.88□□□□□ -1.47
LIMCH1-218ENST00000513024 ZNF575Q86XF7 245 aa5.87□□□□□ -1.47
LIMCH1-218ENST00000513024 EIF4EBP3O60516 100 aaPredicted RBP5.86□□□□□ -1.47
LIMCH1-218ENST00000513024 DMAC1Q96GE9 116 aa5.86□□□□□ -1.47
LIMCH1-218ENST00000513024 RTL8CO15255 209 aa5.86□□□□□ -1.47
LIMCH1-218ENST00000513024 ST20-AS1Q8NBB2 130 aa5.86□□□□□ -1.47
LIMCH1-218ENST00000513024 CSNK1G2-AS1Q8NCQ2 148 aa5.86□□□□□ -1.47
LIMCH1-218ENST00000513024 RELNP78509 3460 aa5.85□□□□□ -1.47
LIMCH1-218ENST00000513024 ATRQ13535 2644 aa5.85□□□□□ -1.47
LIMCH1-218ENST00000513024 FAM104AQ969W3 186 aa5.84□□□□□ -1.47
LIMCH1-218ENST00000513024 MGAM2Q2M2H8 2515 aa5.84□□□□□ -1.47
LIMCH1-218ENST00000513024 LRBAP50851 2863 aa5.84□□□□□ -1.47
LIMCH1-218ENST00000513024 ANKRD17O75179 2603 aaKnown RBP5.84□□□□□ -1.48
LIMCH1-218ENST00000513024 FP248Q71RG6 208 aaPredicted RBP5.83□□□□□ -1.48
LIMCH1-218ENST00000513024 EPG5Q9HCE0 2579 aa5.83□□□□□ -1.48
LIMCH1-218ENST00000513024 IGLV6-57P01721 117 aa5.83□□□□□ -1.48
LIMCH1-218ENST00000513024 C8orf17Q9NRJ1 99 aa5.83□□□□□ -1.48
LIMCH1-218ENST00000513024 ITPR1Q14643 2758 aa5.83□□□□□ -1.48
LIMCH1-218ENST00000513024 TYMSOSQ8TAI1 123 aa5.83□□□□□ -1.48
LIMCH1-218ENST00000513024 C9orf163Q8N9P6 203 aa5.82□□□□□ -1.48
LIMCH1-218ENST00000513024 KRTAP16-1A8MUX0 517 aa5.82□□□□□ -1.48
LIMCH1-218ENST00000513024 LINC00588Q9Y4M8 146 aa5.82□□□□□ -1.48
LIMCH1-218ENST00000513024 CSAG1Q6PB30 78 aa5.81□□□□□ -1.48
LIMCH1-218ENST00000513024 COL12A1Q99715 3063 aa5.81□□□□□ -1.48
LIMCH1-218ENST00000513024 PRR26Q8N8Z3 221 aa5.81□□□□□ -1.48
LIMCH1-218ENST00000513024 Q96NJ1 140 aa5.8□□□□□ -1.48
LIMCH1-218ENST00000513024 PHF5AQ7RTV0 110 aaKnown RBP5.79□□□□□ -1.48
LIMCH1-218ENST00000513024 A0A0D9SG42 100 aa5.79□□□□□ -1.48
LIMCH1-218ENST00000513024 KLK9Q2XQG4 91 aa5.79□□□□□ -1.48
LIMCH1-218ENST00000513024 Q8N9P0 234 aaPredicted RBP5.79□□□□□ -1.48
LIMCH1-218ENST00000513024 K7EIL1 84 aa5.78□□□□□ -1.48
LIMCH1-218ENST00000513024 OCR1Q9BZK8 76 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms