RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 HRCT1Q6UXD1 115 aa6.08□□□□□ -1.44
LIMCH1-215ENST00000512632 SYCNQ0VAF6 134 aa6.08□□□□□ -1.44
LIMCH1-215ENST00000512632 F8WEM9 126 aa6.07□□□□□ -1.44
LIMCH1-215ENST00000512632 NREPQ16612 68 aa6.07□□□□□ -1.44
LIMCH1-215ENST00000512632 SERTAD4-AS1Q5TG53 156 aa6.07□□□□□ -1.44
LIMCH1-215ENST00000512632 NKAPP1Q8N9T2 125 aa6.07□□□□□ -1.44
LIMCH1-215ENST00000512632 TRBV7-6A0A0J9YX20 115 aa6.07□□□□□ -1.44
LIMCH1-215ENST00000512632 RPL37AP8A6NKH3 93 aa6.07□□□□□ -1.44
LIMCH1-215ENST00000512632 C5orf47Q569G3 176 aa6.07□□□□□ -1.44
LIMCH1-215ENST00000512632 BPY2O14599 106 aa6.06□□□□□ -1.44
LIMCH1-215ENST00000512632 KRTAP10-11P60412 298 aa6.06□□□□□ -1.44
LIMCH1-215ENST00000512632 C7orf33Q8WU49 177 aa6.06□□□□□ -1.44
LIMCH1-215ENST00000512632 DEFB131BA0A096LNP1 70 aa6.05□□□□□ -1.44
LIMCH1-215ENST00000512632 BCE1O60756 84 aa6.05□□□□□ -1.44
LIMCH1-215ENST00000512632 KLKP1Q107X0 134 aa6.05□□□□□ -1.44
LIMCH1-215ENST00000512632 Q5XG85 94 aa6.05□□□□□ -1.44
LIMCH1-215ENST00000512632 BAHCC1Q9P281 2608 aa6.04□□□□□ -1.44
LIMCH1-215ENST00000512632 Q8N377 158 aa6.04□□□□□ -1.44
LIMCH1-215ENST00000512632 FAM168BA1KXE4 195 aa6.03□□□□□ -1.44
LIMCH1-215ENST00000512632 H3BNG1 76 aa6.03□□□□□ -1.44
LIMCH1-215ENST00000512632 CASC10Q5T4H9 136 aa6.02□□□□□ -1.45
LIMCH1-215ENST00000512632 LINC01556Q5JQF7 62 aa6.02□□□□□ -1.45
LIMCH1-215ENST00000512632 IGKV4-1P06312 121 aa6.02□□□□□ -1.45
LIMCH1-215ENST00000512632 C11orf45Q8TAV5 145 aa6.02□□□□□ -1.45
LIMCH1-215ENST00000512632 ST20-AS1Q8NBB2 130 aa6.02□□□□□ -1.45
LIMCH1-215ENST00000512632 KCNQ1DNQ9H478 68 aa6.02□□□□□ -1.45
LIMCH1-215ENST00000512632 TMEM254Q8TBM7 123 aa6.01□□□□□ -1.45
LIMCH1-215ENST00000512632 SERP1Q9Y6X1 66 aa6.01□□□□□ -1.45
LIMCH1-215ENST00000512632 WIPF1O43516 503 aa6.01□□□□□ -1.45
LIMCH1-215ENST00000512632 FBN1P35555 2871 aaKnown RBP6□□□□□ -1.45
LIMCH1-215ENST00000512632 ETDCA0A1B0GVM5 59 aa6□□□□□ -1.45
LIMCH1-215ENST00000512632 COL6A5A8TX70 2615 aa5.99□□□□□ -1.45
LIMCH1-215ENST00000512632 PRB2P02812 416 aaPredicted RBP5.99□□□□□ -1.45
LIMCH1-215ENST00000512632 Q9BRP9 147 aa5.99□□□□□ -1.45
LIMCH1-215ENST00000512632 A0A1W2PNM2 257 aa5.99□□□□□ -1.45
LIMCH1-215ENST00000512632 KMT2BQ9UMN6 2715 aaPredicted RBP5.99□□□□□ -1.45
LIMCH1-215ENST00000512632 FUSP35637 526 aaKnown RBP eCLIP5.98□□□□□ -1.45
LIMCH1-215ENST00000512632 ERC2-IT1O76042 136 aa5.98□□□□□ -1.45
LIMCH1-215ENST00000512632 A0A0G2JQZ4 141 aa5.98□□□□□ -1.45
LIMCH1-215ENST00000512632 A0A1W2PNN7 141 aa5.98□□□□□ -1.45
LIMCH1-215ENST00000512632 C1orf137Q5JT78 98 aa5.98□□□□□ -1.45
LIMCH1-215ENST00000512632 LINC00474Q9P2X8 69 aa5.98□□□□□ -1.45
LIMCH1-215ENST00000512632 Q6ZRX8 168 aa5.97□□□□□ -1.45
LIMCH1-215ENST00000512632 IGLV5-48A0A075B6I7 105 aa5.97□□□□□ -1.45
LIMCH1-215ENST00000512632 FAM30AQ9NZY2 134 aa5.97□□□□□ -1.45
LIMCH1-215ENST00000512632 UBE2BP63146 152 aa5.97□□□□□ -1.45
LIMCH1-215ENST00000512632 HIGD2AQ9BW72 106 aa5.97□□□□□ -1.45
LIMCH1-215ENST00000512632 OCR1Q9BZK8 76 aa5.97□□□□□ -1.45
LIMCH1-215ENST00000512632 DNAH10OSP0CZ25 163 aa5.96□□□□□ -1.46
LIMCH1-215ENST00000512632 KRTAP7-1Q8IUC3 87 aa5.96□□□□□ -1.46
LIMCH1-215ENST00000512632 DHRS4-AS1Q9P1J3 65 aa5.96□□□□□ -1.46
LIMCH1-215ENST00000512632 LINC00588Q9Y4M8 146 aa5.96□□□□□ -1.46
LIMCH1-215ENST00000512632 IGLV1-50A0A075B6I6 118 aa5.96□□□□□ -1.46
LIMCH1-215ENST00000512632 NDUFC1O43677 76 aa5.96□□□□□ -1.46
LIMCH1-215ENST00000512632 EPM2AB3EWF7 344 aa5.95□□□□□ -1.46
LIMCH1-215ENST00000512632 FP248Q71RG6 208 aaPredicted RBP5.95□□□□□ -1.46
LIMCH1-215ENST00000512632 SMIM29Q86T20 159 aa5.95□□□□□ -1.46
LIMCH1-215ENST00000512632 NBEAL1Q6ZS30 2694 aa5.95□□□□□ -1.46
LIMCH1-215ENST00000512632 MRAPQ8TCY5 172 aa5.95□□□□□ -1.46
LIMCH1-215ENST00000512632 KRTAP4-16G5E9R7 235 aaPredicted RBP5.94□□□□□ -1.46
LIMCH1-215ENST00000512632 SMIM26A0A096LP01 95 aa5.94□□□□□ -1.46
LIMCH1-215ENST00000512632 F8WDY8 70 aa5.94□□□□□ -1.46
LIMCH1-215ENST00000512632 PRYO14603 147 aa5.94□□□□□ -1.46
LIMCH1-215ENST00000512632 MRPL55Q7Z7F7 128 aaKnown RBP5.93□□□□□ -1.46
LIMCH1-215ENST00000512632 Q8NBF4 154 aa5.93□□□□□ -1.46
LIMCH1-215ENST00000512632 A0A0U1RQV1 116 aa5.93□□□□□ -1.46
LIMCH1-215ENST00000512632 DEFB116Q30KQ4 102 aa5.93□□□□□ -1.46
LIMCH1-215ENST00000512632 TLX1NBP0CAT3 122 aa5.93□□□□□ -1.46
LIMCH1-215ENST00000512632 LINC00336Q6ZUF6 198 aa5.93□□□□□ -1.46
LIMCH1-215ENST00000512632 IGKV2-24A0A0C4DH68 120 aa5.92□□□□□ -1.46
LIMCH1-215ENST00000512632 KRTAP24-1Q3LI83 254 aa5.92□□□□□ -1.46
LIMCH1-215ENST00000512632 MGAM2Q2M2H8 2515 aa5.92□□□□□ -1.46
LIMCH1-215ENST00000512632 SPRR1AP35321 89 aa5.92□□□□□ -1.46
LIMCH1-215ENST00000512632 TNP2Q05952 138 aa5.92□□□□□ -1.46
LIMCH1-215ENST00000512632 MPLKIPQ8TAP9 179 aa5.92□□□□□ -1.46
LIMCH1-215ENST00000512632 K7EQZ3 153 aa5.91□□□□□ -1.46
LIMCH1-215ENST00000512632 FAM229BQ4G0N7 80 aa5.91□□□□□ -1.46
LIMCH1-215ENST00000512632 ANK2Q01484 3957 aa5.91□□□□□ -1.46
LIMCH1-215ENST00000512632 PLA2G2DQ9UNK4 145 aa5.91□□□□□ -1.46
LIMCH1-215ENST00000512632 DSCR10P59022 87 aa5.9□□□□□ -1.46
LIMCH1-215ENST00000512632 PRLHP81277 87 aa5.9□□□□□ -1.47
LIMCH1-215ENST00000512632 LINC00476Q8WZB0 136 aa5.89□□□□□ -1.47
LIMCH1-215ENST00000512632 LRCOL1A6NCL2 159 aa5.89□□□□□ -1.47
LIMCH1-215ENST00000512632 REG3GQ6UW15 175 aa5.89□□□□□ -1.47
LIMCH1-215ENST00000512632 IGLV5-37A0A075B6J1 123 aa5.89□□□□□ -1.47
LIMCH1-215ENST00000512632 ATP5EP56381 51 aaPredicted RBP5.88□□□□□ -1.47
LIMCH1-215ENST00000512632 STAB2Q8WWQ8 2551 aa5.88□□□□□ -1.47
LIMCH1-215ENST00000512632 SPRR4Q96PI1 79 aa5.87□□□□□ -1.47
LIMCH1-215ENST00000512632 SRRM2Q9UQ35 2752 aaKnown RBP5.87□□□□□ -1.47
LIMCH1-215ENST00000512632 PRR4Q16378 134 aa5.87□□□□□ -1.47
LIMCH1-215ENST00000512632 WFDC13Q8IUB5 93 aa5.86□□□□□ -1.47
LIMCH1-215ENST00000512632 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.86□□□□□ -1.47
LIMCH1-215ENST00000512632 A0A087WSZ3 146 aa5.86□□□□□ -1.47
LIMCH1-215ENST00000512632 A0A096LNI7 61 aa5.86□□□□□ -1.47
LIMCH1-215ENST00000512632 IGFL1Q6UW32 110 aa5.86□□□□□ -1.47
LIMCH1-215ENST00000512632 A0A1B0GW54 56 aa5.85□□□□□ -1.47
LIMCH1-215ENST00000512632 PSCAO43653 123 aa5.85□□□□□ -1.47
LIMCH1-215ENST00000512632 RPL37AP61513 92 aaKnown RBP5.84□□□□□ -1.47
LIMCH1-215ENST00000512632 CHTF8P0CG12 524 aa5.83□□□□□ -1.48
LIMCH1-215ENST00000512632 KRTAP1-5Q9BYS1 174 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms