RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 RMI2Q96E14 147 aa11.68□□□□□ -0.54
CCHCR1-228ENST00000509552 BCE1O60756 84 aa11.68□□□□□ -0.54
CCHCR1-228ENST00000509552 CYSTM1Q9H1C7 97 aa11.68□□□□□ -0.54
CCHCR1-228ENST00000509552 TMEM258P61165 79 aa11.65□□□□□ -0.54
CCHCR1-228ENST00000509552 TM2D3Q9BRN9 247 aa11.65□□□□□ -0.54
CCHCR1-228ENST00000509552 FLNBO75369 2602 aaKnown RBP11.65□□□□□ -0.55
CCHCR1-228ENST00000509552 PRB2P02812 416 aaPredicted RBP11.64□□□□□ -0.55
CCHCR1-228ENST00000509552 MAST4O15021 2626 aa11.64□□□□□ -0.55
CCHCR1-228ENST00000509552 DEFB105AQ8NG35 78 aa11.64□□□□□ -0.55
CCHCR1-228ENST00000509552 DHRS4-AS1Q9P1J3 65 aa11.64□□□□□ -0.55
CCHCR1-228ENST00000509552 CASC10Q5T4H9 136 aa11.63□□□□□ -0.55
CCHCR1-228ENST00000509552 IGLV5-37A0A075B6J1 123 aa11.63□□□□□ -0.55
CCHCR1-228ENST00000509552 PRYO14603 147 aa11.63□□□□□ -0.55
CCHCR1-228ENST00000509552 RPL37AP8A6NKH3 93 aa11.61□□□□□ -0.55
CCHCR1-228ENST00000509552 IGLV1-50A0A075B6I6 118 aa11.61□□□□□ -0.55
CCHCR1-228ENST00000509552 TRAV7A0A075B6U4 112 aa11.61□□□□□ -0.55
CCHCR1-228ENST00000509552 Q6ZRX8 168 aa11.61□□□□□ -0.55
CCHCR1-228ENST00000509552 NOTCH1P46531 2555 aa11.61□□□□□ -0.55
CCHCR1-228ENST00000509552 ETDCA0A1B0GVM5 59 aa11.6□□□□□ -0.55
CCHCR1-228ENST00000509552 FAM168BA1KXE4 195 aa11.6□□□□□ -0.55
CCHCR1-228ENST00000509552 J3KT08 172 aa11.6□□□□□ -0.55
CCHCR1-228ENST00000509552 SCXQ7RTU7 201 aa11.6□□□□□ -0.55
CCHCR1-228ENST00000509552 Q8N377 158 aa11.6□□□□□ -0.55
CCHCR1-228ENST00000509552 C20orf197Q8N268 126 aa11.58□□□□□ -0.56
CCHCR1-228ENST00000509552 NREPQ16612 68 aa11.58□□□□□ -0.56
CCHCR1-228ENST00000509552 LOC107984640A0A0U1RRK4 108 aa11.57□□□□□ -0.56
CCHCR1-228ENST00000509552 KRTAP4-16G5E9R7 235 aaPredicted RBP11.57□□□□□ -0.56
CCHCR1-228ENST00000509552 K7EIL1 84 aa11.57□□□□□ -0.56
CCHCR1-228ENST00000509552 SPRR1AP35321 89 aa11.57□□□□□ -0.56
CCHCR1-228ENST00000509552 RPS28P62857 69 aaKnown RBP11.57□□□□□ -0.56
CCHCR1-228ENST00000509552 IGLV5-48A0A075B6I7 105 aa11.56□□□□□ -0.56
CCHCR1-228ENST00000509552 MRPL55Q7Z7F7 128 aaKnown RBP11.55□□□□□ -0.56
CCHCR1-228ENST00000509552 Q9BRP9 147 aa11.55□□□□□ -0.56
CCHCR1-228ENST00000509552 FAM19A5Q7Z5A7 132 aaPredicted RBP11.55□□□□□ -0.56
CCHCR1-228ENST00000509552 KRTAP7-1Q8IUC3 87 aa11.53□□□□□ -0.56
CCHCR1-228ENST00000509552 C3orf84H3BNL1 204 aa11.53□□□□□ -0.56
CCHCR1-228ENST00000509552 SVIPQ8NHG7 77 aa11.53□□□□□ -0.56
CCHCR1-228ENST00000509552 DPH3Q96FX2 82 aa11.53□□□□□ -0.56
CCHCR1-228ENST00000509552 DNAH1Q9P2D7 4330 aa11.53□□□□□ -0.56
CCHCR1-228ENST00000509552 BAHCC1Q9P281 2608 aa11.52□□□□□ -0.57
CCHCR1-228ENST00000509552 FUSP35637 526 aaKnown RBP eCLIP11.52□□□□□ -0.57
CCHCR1-228ENST00000509552 A0A1B0GW54 56 aa11.51□□□□□ -0.57
CCHCR1-228ENST00000509552 BPY2O14599 106 aa11.5□□□□□ -0.57
CCHCR1-228ENST00000509552 HUWE1Q7Z6Z7 4374 aaKnown RBP11.49□□□□□ -0.57
CCHCR1-228ENST00000509552 UBE2BP63146 152 aa11.49□□□□□ -0.57
CCHCR1-228ENST00000509552 ST20-AS1Q8NBB2 130 aa11.49□□□□□ -0.57
CCHCR1-228ENST00000509552 NBEAL1Q6ZS30 2694 aa11.49□□□□□ -0.57
CCHCR1-228ENST00000509552 COL6A5A8TX70 2615 aa11.48□□□□□ -0.57
CCHCR1-228ENST00000509552 C1orf137Q5JT78 98 aa11.48□□□□□ -0.57
CCHCR1-228ENST00000509552 REG3GQ6UW15 175 aa11.48□□□□□ -0.57
CCHCR1-228ENST00000509552 IGKV4-1P06312 121 aa11.47□□□□□ -0.57
CCHCR1-228ENST00000509552 TNP2Q05952 138 aa11.47□□□□□ -0.57
CCHCR1-228ENST00000509552 KLKP1Q107X0 134 aa11.47□□□□□ -0.57
CCHCR1-228ENST00000509552 Q8N9L7 120 aa11.47□□□□□ -0.57
CCHCR1-228ENST00000509552 ERC2-IT1O76042 136 aa11.44□□□□□ -0.58
CCHCR1-228ENST00000509552 A0A1W2PNM2 257 aa11.44□□□□□ -0.58
CCHCR1-228ENST00000509552 PSCAO43653 123 aa11.43□□□□□ -0.58
CCHCR1-228ENST00000509552 Q8NBF4 154 aa11.43□□□□□ -0.58
CCHCR1-228ENST00000509552 H7BZZ5 65 aa11.42□□□□□ -0.58
CCHCR1-228ENST00000509552 SNURFQ9Y675 71 aa11.42□□□□□ -0.58
CCHCR1-228ENST00000509552 FAM236DA0A1B0GTK5 79 aa11.42□□□□□ -0.58
CCHCR1-228ENST00000509552 FAM236CP0DP71 79 aa11.42□□□□□ -0.58
CCHCR1-228ENST00000509552 C16orf90A8MZG2 172 aa11.41□□□□□ -0.58
CCHCR1-228ENST00000509552 UBE2DNLQ8IWF7 75 aa11.41□□□□□ -0.58
CCHCR1-228ENST00000509552 CNBPP62633 177 aaKnown RBP11.41□□□□□ -0.58
CCHCR1-228ENST00000509552 KRTAP1-5Q9BYS1 174 aa11.41□□□□□ -0.58
CCHCR1-228ENST00000509552 A0A096LNI7 61 aa11.4□□□□□ -0.58
CCHCR1-228ENST00000509552 IGKV2-24A0A0C4DH68 120 aa11.4□□□□□ -0.59
CCHCR1-228ENST00000509552 SPRR4Q96PI1 79 aa11.39□□□□□ -0.59
CCHCR1-228ENST00000509552 F8WEM9 126 aa11.38□□□□□ -0.59
CCHCR1-228ENST00000509552 NDUFC1O43677 76 aa11.37□□□□□ -0.59
CCHCR1-228ENST00000509552 C14orf177Q52M58 125 aa11.36□□□□□ -0.59
CCHCR1-228ENST00000509552 A0A1W2PNN7 141 aa11.35□□□□□ -0.59
CCHCR1-228ENST00000509552 SMIM29Q86T20 159 aa11.35□□□□□ -0.59
CCHCR1-228ENST00000509552 OXTP01178 125 aa11.35□□□□□ -0.59
CCHCR1-228ENST00000509552 TMEM254Q8TBM7 123 aa11.34□□□□□ -0.59
CCHCR1-228ENST00000509552 APLNQ9ULZ1 77 aa11.34□□□□□ -0.59
CCHCR1-228ENST00000509552 LINC00476Q8WZB0 136 aa11.34□□□□□ -0.59
CCHCR1-228ENST00000509552 OCR1Q9BZK8 76 aa11.33□□□□□ -0.6
CCHCR1-228ENST00000509552 MGAM2Q2M2H8 2515 aa11.33□□□□□ -0.6
CCHCR1-228ENST00000509552 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.32□□□□□ -0.6
CCHCR1-228ENST00000509552 PRLHP81277 87 aa11.32□□□□□ -0.6
CCHCR1-228ENST00000509552 HIGD2AQ9BW72 106 aa11.3□□□□□ -0.6
CCHCR1-228ENST00000509552 SERP1Q9Y6X1 66 aa11.3□□□□□ -0.6
CCHCR1-228ENST00000509552 STAB2Q8WWQ8 2551 aa11.29□□□□□ -0.6
CCHCR1-228ENST00000509552 DNAH10Q8IVF4 4471 aa11.28□□□□□ -0.6
CCHCR1-228ENST00000509552 IGFL1Q6UW32 110 aa11.27□□□□□ -0.6
CCHCR1-228ENST00000509552 DSCR10P59022 87 aa11.26□□□□□ -0.61
CCHCR1-228ENST00000509552 LYSTQ99698 3801 aa11.26□□□□□ -0.61
CCHCR1-228ENST00000509552 ATP5EP56381 51 aaPredicted RBP11.25□□□□□ -0.61
CCHCR1-228ENST00000509552 PKIGQ9Y2B9 76 aa11.25□□□□□ -0.61
CCHCR1-228ENST00000509552 IGLV8-61A0A075B6I0 122 aa11.25□□□□□ -0.61
CCHCR1-228ENST00000509552 CHTF8P0CG12 524 aa11.25□□□□□ -0.61
CCHCR1-228ENST00000509552 PHF5AQ7RTV0 110 aaKnown RBP11.25□□□□□ -0.61
CCHCR1-228ENST00000509552 A0A0U1RQV1 116 aa11.24□□□□□ -0.61
CCHCR1-228ENST00000509552 UBE2AP49459 152 aa11.24□□□□□ -0.61
CCHCR1-228ENST00000509552 EPM2AB3EWF7 344 aa11.23□□□□□ -0.61
CCHCR1-228ENST00000509552 K7EQZ3 153 aa11.23□□□□□ -0.61
CCHCR1-228ENST00000509552 B9D2Q9BPU9 175 aa11.23□□□□□ -0.61
CCHCR1-228ENST00000509552 FAM30AQ9NZY2 134 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 125.9 ms