RNA–Protein interactions for RNA: ENST00000509009.5

PDPN-208, Transcript of podoplanin, humanhuman

TSL 4 BASIC

Gene PDPN, Length 571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-208ENST00000509009 IGLV6-57P01721 117 aa7.06□□□□□ -1.28
PDPN-208ENST00000509009 LGALS3P17931 250 aaKnown RBP7.06□□□□□ -1.28
PDPN-208ENST00000509009 HERVK_113P61574 105 aa7.06□□□□□ -1.28
PDPN-208ENST00000509009 SSBP3-AS1Q7Z2R9 100 aa7.06□□□□□ -1.28
PDPN-208ENST00000509009 EIF4EBP3O60516 100 aaPredicted RBP7.05□□□□□ -1.28
PDPN-208ENST00000509009 NDUFC2O95298 119 aa7.05□□□□□ -1.28
PDPN-208ENST00000509009 KRTAP13-3Q3SY46 172 aa7.05□□□□□ -1.28
PDPN-208ENST00000509009 ADAMTSL4-AS1Q5T5F5 129 aa7.05□□□□□ -1.28
PDPN-208ENST00000509009 SPANXB1Q9NS25 103 aaPredicted RBP7.05□□□□□ -1.28
PDPN-208ENST00000509009 IGLV9-49A0A0B4J1Y8 123 aa7.04□□□□□ -1.28
PDPN-208ENST00000509009 S100A7L2Q5SY68 101 aa7.04□□□□□ -1.28
PDPN-208ENST00000509009 SOSTDC1Q6X4U4 206 aa7.04□□□□□ -1.28
PDPN-208ENST00000509009 Q6ZRX8 168 aa7.04□□□□□ -1.28
PDPN-208ENST00000509009 MIEN1Q9BRT3 115 aa7.04□□□□□ -1.28
PDPN-208ENST00000509009 A0A0J9YXY3 114 aa7.03□□□□□ -1.28
PDPN-208ENST00000509009 MOBPQ13875 183 aa7.03□□□□□ -1.28
PDPN-208ENST00000509009 HIST3H2BBQ8N257 126 aa7.03□□□□□ -1.28
PDPN-208ENST00000509009 E9PLD3 99 aa7.01□□□□□ -1.29
PDPN-208ENST00000509009 NPC2P61916 151 aa7.01□□□□□ -1.29
PDPN-208ENST00000509009 RPS29P62273 56 aaKnown RBP7.01□□□□□ -1.29
PDPN-208ENST00000509009 KRTAP9-2Q9BYQ4 174 aa7.01□□□□□ -1.29
PDPN-208ENST00000509009 TRAV23DV6A0A075B6W5 121 aa7□□□□□ -1.29
PDPN-208ENST00000509009 JOSD1Q15040 202 aaPredicted RBP7□□□□□ -1.29
PDPN-208ENST00000509009 ASB16-AS1Q495Z4 193 aa7□□□□□ -1.29
PDPN-208ENST00000509009 Q8N377 158 aa7□□□□□ -1.29
PDPN-208ENST00000509009 ZNF73O43830 326 aaPredicted RBP6.99□□□□□ -1.29
PDPN-208ENST00000509009 HIST1H2BLQ99880 126 aa6.99□□□□□ -1.29
PDPN-208ENST00000509009 SYS1-DBNDD2H3BUS1 97 aa6.98□□□□□ -1.29
PDPN-208ENST00000509009 SLC25A20O43772 301 aa6.98□□□□□ -1.29
PDPN-208ENST00000509009 ST20-AS1Q8NBB2 130 aa6.98□□□□□ -1.29
PDPN-208ENST00000509009 LITAFQ99732 161 aa6.98□□□□□ -1.29
PDPN-208ENST00000509009 S100A2P29034 98 aa6.97□□□□□ -1.29
PDPN-208ENST00000509009 LINC00308Q8TCZ7 52 aa6.97□□□□□ -1.29
PDPN-208ENST00000509009 HINT1P49773 126 aaPredicted RBP6.96□□□□□ -1.3
PDPN-208ENST00000509009 KRTAP4-1Q9BYQ7 146 aa6.96□□□□□ -1.3
PDPN-208ENST00000509009 TIMM17BO60830 172 aa6.95□□□□□ -1.3
PDPN-208ENST00000509009 SEC61BP60468 96 aaKnown RBP6.95□□□□□ -1.3
PDPN-208ENST00000509009 C9orf153Q5TBE3 101 aa6.95□□□□□ -1.3
PDPN-208ENST00000509009 LINC01545Q5VT33 79 aa6.95□□□□□ -1.3
PDPN-208ENST00000509009 OR13C6PQ8NH95 151 aa6.95□□□□□ -1.3
PDPN-208ENST00000509009 SPANXCQ9NY87 97 aa6.95□□□□□ -1.3
PDPN-208ENST00000509009 CBY1Q9Y3M2 126 aa6.95□□□□□ -1.3
PDPN-208ENST00000509009 AKR1D1P51857 326 aa6.94□□□□□ -1.3
PDPN-208ENST00000509009 SPRR1BP22528 89 aa6.93□□□□□ -1.3
PDPN-208ENST00000509009 PET117Q6UWS5 81 aa6.93□□□□□ -1.3
PDPN-208ENST00000509009 TTTY13Q9BZ97 58 aa6.92□□□□□ -1.3
PDPN-208ENST00000509009 DHRS4-AS1Q9P1J3 65 aa6.92□□□□□ -1.3
PDPN-208ENST00000509009 ZNF815PA8K554 130 aa6.91□□□□□ -1.3
PDPN-208ENST00000509009 XP32Q5T750 250 aa6.91□□□□□ -1.3
PDPN-208ENST00000509009 LINC00518Q8N0U6 118 aa6.91□□□□□ -1.3
PDPN-208ENST00000509009 SPANXDQ9BXN6 97 aa6.91□□□□□ -1.3
PDPN-208ENST00000509009 C3orf79P0CE67 100 aa6.9□□□□□ -1.3
PDPN-208ENST00000509009 SMIM6P0DI80 62 aa6.9□□□□□ -1.3
PDPN-208ENST00000509009 PYY3Q5JQD4 70 aa6.9□□□□□ -1.3
PDPN-208ENST00000509009 SLC25A34Q6PIV7 304 aa6.89□□□□□ -1.31
PDPN-208ENST00000509009 COX7BP24311 80 aa6.88□□□□□ -1.31
PDPN-208ENST00000509009 LINC01547P58512 204 aaPredicted RBP6.88□□□□□ -1.31
PDPN-208ENST00000509009 ELOF1P60002 83 aaKnown RBP6.88□□□□□ -1.31
PDPN-208ENST00000509009 LAMTOR3Q9UHA4 124 aa6.88□□□□□ -1.31
PDPN-208ENST00000509009 C6orf99Q4VX62 202 aa6.87□□□□□ -1.31
PDPN-208ENST00000509009 HRCT1Q6UXD1 115 aa6.87□□□□□ -1.31
PDPN-208ENST00000509009 TAL2Q16559 108 aa6.86□□□□□ -1.31
PDPN-208ENST00000509009 C12orf57Q99622 126 aa6.86□□□□□ -1.31
PDPN-208ENST00000509009 TRBV7-6A0A0J9YX20 115 aa6.85□□□□□ -1.31
PDPN-208ENST00000509009 KRTDAPP60985 99 aa6.85□□□□□ -1.31
PDPN-208ENST00000509009 DEFB105AQ8NG35 78 aa6.85□□□□□ -1.31
PDPN-208ENST00000509009 LIMD2Q9BT23 127 aa6.85□□□□□ -1.31
PDPN-208ENST00000509009 TEX49A0A1B0GTD5 131 aa6.83□□□□□ -1.32
PDPN-208ENST00000509009 SCGB1D1O95968 90 aa6.83□□□□□ -1.32
PDPN-208ENST00000509009 CD164Q04900 197 aa6.83□□□□□ -1.32
PDPN-208ENST00000509009 Q1RN00 199 aa6.83□□□□□ -1.32
PDPN-208ENST00000509009 ANKRD39Q53RE8 183 aa6.83□□□□□ -1.32
PDPN-208ENST00000509009 SCGB1D4Q6XE38 83 aa6.83□□□□□ -1.32
PDPN-208ENST00000509009 SMIM29Q86T20 159 aa6.83□□□□□ -1.32
PDPN-208ENST00000509009 PRO1933Q9H354 126 aa6.83□□□□□ -1.32
PDPN-208ENST00000509009 IFITM1P13164 125 aa6.82□□□□□ -1.32
PDPN-208ENST00000509009 LCE2CQ5TA81 110 aa6.81□□□□□ -1.32
PDPN-208ENST00000509009 Q6ZVH6 145 aa6.81□□□□□ -1.32
PDPN-208ENST00000509009 MUSTN1Q8IVN3 82 aa6.81□□□□□ -1.32
PDPN-208ENST00000509009 COPS9Q8WXC6 57 aa6.81□□□□□ -1.32
PDPN-208ENST00000509009 KRTAP9-6A0A140TA67 174 aa6.8□□□□□ -1.32
PDPN-208ENST00000509009 A0A1B0GWB2 263 aa6.8□□□□□ -1.32
PDPN-208ENST00000509009 C20orf202A1L168 122 aa6.8□□□□□ -1.32
PDPN-208ENST00000509009 A6NDN8 102 aa6.8□□□□□ -1.32
PDPN-208ENST00000509009 C9orf92A6NGG3 77 aa6.8□□□□□ -1.32
PDPN-208ENST00000509009 PCP2Q8IVA1 136 aa6.8□□□□□ -1.32
PDPN-208ENST00000509009 ATOH7Q8N100 152 aa6.8□□□□□ -1.32
PDPN-208ENST00000509009 IGLV5-48A0A075B6I7 105 aa6.79□□□□□ -1.32
PDPN-208ENST00000509009 H7C2G1 150 aa6.79□□□□□ -1.32
PDPN-208ENST00000509009 PCOTHQ58A44 107 aa6.79□□□□□ -1.32
PDPN-208ENST00000509009 Q5XG85 94 aa6.79□□□□□ -1.32
PDPN-208ENST00000509009 A0A0G2JQZ4 141 aa6.78□□□□□ -1.32
PDPN-208ENST00000509009 KRTAP19-2Q3LHN2 52 aa6.77□□□□□ -1.33
PDPN-208ENST00000509009 C1orf195Q5TG92 126 aa6.77□□□□□ -1.33
PDPN-208ENST00000509009 IGLV8-61A0A075B6I0 122 aa6.76□□□□□ -1.33
PDPN-208ENST00000509009 A4D1N5 150 aa6.76□□□□□ -1.33
PDPN-208ENST00000509009 LCE2DQ5TA82 110 aaPredicted RBP6.76□□□□□ -1.33
PDPN-208ENST00000509009 SMIM11BQ8TCY0 68 aa6.76□□□□□ -1.33
PDPN-208ENST00000509009 TRAV13-2A0A0B4J235 113 aa6.75□□□□□ -1.33
PDPN-208ENST00000509009 VAMP8Q9BV40 100 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms