RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ST20-AS1Q8NBB2 130 aa0.91□□□□□ -2.26
NUP54-208ENST00000508604 COX14Q96I36 57 aa0.91□□□□□ -2.26
NUP54-208ENST00000508604 F5P12259 2224 aa0.9□□□□□ -2.26
NUP54-208ENST00000508604 CADP27708 2225 aa0.9□□□□□ -2.26
NUP54-208ENST00000508604 USP24Q9UPU5 2620 aa0.9□□□□□ -2.27
NUP54-208ENST00000508604 I3L2K1 104 aa0.9□□□□□ -2.27
NUP54-208ENST00000508604 K7EIM0 57 aa0.9□□□□□ -2.27
NUP54-208ENST00000508604 M0R2N4 97 aa0.9□□□□□ -2.27
NUP54-208ENST00000508604 DEFB132Q7Z7B7 95 aa0.9□□□□□ -2.27
NUP54-208ENST00000508604 PATE1Q8WXA2 126 aa0.9□□□□□ -2.27
NUP54-208ENST00000508604 LINC00472Q9H8W2 130 aa0.9□□□□□ -2.27
NUP54-208ENST00000508604 PCLOQ9Y6V0 5065 aa0.9□□□□□ -2.27
NUP54-208ENST00000508604 RP1P56715 2156 aa0.89□□□□□ -2.27
NUP54-208ENST00000508604 IGLV5-48A0A075B6I7 105 aa0.89□□□□□ -2.27
NUP54-208ENST00000508604 A0A087WTM6 91 aa0.89□□□□□ -2.27
NUP54-208ENST00000508604 DEFB108AA8MXU0 73 aa0.89□□□□□ -2.27
NUP54-208ENST00000508604 H0YGG7 62 aa0.89□□□□□ -2.27
NUP54-208ENST00000508604 ACYP2P14621 99 aa0.89□□□□□ -2.27
NUP54-208ENST00000508604 SPINT4Q6UDR6 99 aa0.89□□□□□ -2.27
NUP54-208ENST00000508604 LEAP2Q969E1 77 aa0.89□□□□□ -2.27
NUP54-208ENST00000508604 TP53AIP1Q9HCN2 124 aa0.89□□□□□ -2.27
NUP54-208ENST00000508604 ZFHX3Q15911 3703 aa0.88□□□□□ -2.27
NUP54-208ENST00000508604 LYNX1G3V0Z9 82 aa0.88□□□□□ -2.27
NUP54-208ENST00000508604 STATHP02808 62 aa0.88□□□□□ -2.27
NUP54-208ENST00000508604 PRB1P04280 392 aa0.88□□□□□ -2.27
NUP54-208ENST00000508604 HRES1P13985 223 aa0.88□□□□□ -2.27
NUP54-208ENST00000508604 COX6A2Q02221 97 aa0.88□□□□□ -2.27
NUP54-208ENST00000508604 PSORS1C2Q9UIG4 136 aa0.88□□□□□ -2.27
NUP54-208ENST00000508604 CCL26Q9Y258 94 aa0.88□□□□□ -2.27
NUP54-208ENST00000508604 SDK1Q7Z5N4 2213 aa0.88□□□□□ -2.27
NUP54-208ENST00000508604 NBDYA0A0U1RRE5 68 aa0.88□□□□□ -2.27
NUP54-208ENST00000508604 IGLV6-57P01721 117 aa0.88□□□□□ -2.27
NUP54-208ENST00000508604 ANGP03950 147 aaKnown RBP0.88□□□□□ -2.27
NUP54-208ENST00000508604 PRB3Q04118 309 aaPredicted RBP0.88□□□□□ -2.27
NUP54-208ENST00000508604 KLK9Q2XQG4 91 aa0.88□□□□□ -2.27
NUP54-208ENST00000508604 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.88□□□□□ -2.27
NUP54-208ENST00000508604 Q96NJ1 140 aa0.88□□□□□ -2.27
NUP54-208ENST00000508604 PDE4DIPQ5VU43 2346 aa0.87□□□□□ -2.27
NUP54-208ENST00000508604 ABCA4P78363 2273 aa0.87□□□□□ -2.27
NUP54-208ENST00000508604 MED13LQ71F56 2210 aa0.87□□□□□ -2.27
NUP54-208ENST00000508604 SORL1Q92673 2214 aa0.87□□□□□ -2.27
NUP54-208ENST00000508604 A0A0G2JQZ4 141 aa0.87□□□□□ -2.27
NUP54-208ENST00000508604 A0A1W2PNN7 141 aa0.87□□□□□ -2.27
NUP54-208ENST00000508604 K7EQZ3 153 aa0.87□□□□□ -2.27
NUP54-208ENST00000508604 LY6G6CO95867 125 aa0.87□□□□□ -2.27
NUP54-208ENST00000508604 CCL19Q99731 98 aa0.87□□□□□ -2.27
NUP54-208ENST00000508604 PRO2289Q9P1D8 64 aa0.87□□□□□ -2.27
NUP54-208ENST00000508604 RTTNQ86VV8 2226 aa0.86□□□□□ -2.27
NUP54-208ENST00000508604 SPTY2D1-AS1A0A0U1RR47 76 aa0.86□□□□□ -2.27
NUP54-208ENST00000508604 C10orf55Q5SWW7 151 aa0.86□□□□□ -2.27
NUP54-208ENST00000508604 C5orf56Q8N8D9 126 aa0.86□□□□□ -2.27
NUP54-208ENST00000508604 PRO3102Q9H379 93 aa0.86□□□□□ -2.27
NUP54-208ENST00000508604 NEBP20929 6669 aa0.86□□□□□ -2.27
NUP54-208ENST00000508604 UBR4Q5T4S7 5183 aa0.86□□□□□ -2.27
NUP54-208ENST00000508604 URB1O60287 2271 aaKnown RBP0.86□□□□□ -2.27
NUP54-208ENST00000508604 PTPRQQ9UMZ3 2332 aa0.86□□□□□ -2.27
NUP54-208ENST00000508604 RPL37AP61513 92 aaKnown RBP0.85□□□□□ -2.27
NUP54-208ENST00000508604 MINOS1Q5TGZ0 78 aa0.85□□□□□ -2.27
NUP54-208ENST00000508604 TOMM7Q9P0U1 55 aa0.85□□□□□ -2.27
NUP54-208ENST00000508604 C6orf48Q9UBA6 75 aa0.85□□□□□ -2.27
NUP54-208ENST00000508604 ASXL3Q9C0F0 2248 aa0.85□□□□□ -2.27
NUP54-208ENST00000508604 MUC16Q8WXI7 14507 aa0.85□□□□□ -2.27
NUP54-208ENST00000508604 DEFB131AP59861 70 aa0.84□□□□□ -2.27
NUP54-208ENST00000508604 KRTAP5-10Q6L8G5 202 aa0.84□□□□□ -2.27
NUP54-208ENST00000508604 SSBP3-AS1Q7Z2R9 100 aa0.84□□□□□ -2.27
NUP54-208ENST00000508604 WFDC10BQ8IUB3 73 aa0.84□□□□□ -2.27
NUP54-208ENST00000508604 WFDC13Q8IUB5 93 aa0.84□□□□□ -2.27
NUP54-208ENST00000508604 KAAG1Q9UBP8 84 aa0.84□□□□□ -2.27
NUP54-208ENST00000508604 ASCC3Q8N3C0 2202 aaKnown RBP0.84□□□□□ -2.27
NUP54-208ENST00000508604 MUC5ACP98088 5654 aa0.84□□□□□ -2.28
NUP54-208ENST00000508604 GVQW2A0A096LPI5 108 aaPredicted RBP0.84□□□□□ -2.28
NUP54-208ENST00000508604 PCOTHQ58A44 107 aa0.84□□□□□ -2.28
NUP54-208ENST00000508604 COX6B2Q6YFQ2 88 aa0.84□□□□□ -2.28
NUP54-208ENST00000508604 DEFB104AQ8WTQ1 72 aa0.84□□□□□ -2.28
NUP54-208ENST00000508604 TECTAO75443 2155 aa0.83□□□□□ -2.28
NUP54-208ENST00000508604 MRPL34Q9BQ48 92 aaKnown RBP0.83□□□□□ -2.28
NUP54-208ENST00000508604 R4GN34 69 aa0.83□□□□□ -2.28
NUP54-208ENST00000508604 CNTRLQ7Z7A1 2325 aa0.82□□□□□ -2.28
NUP54-208ENST00000508604 MMP24-AS1A0A0U1RRL7 71 aa0.82□□□□□ -2.28
NUP54-208ENST00000508604 A8MTW9 85 aa0.82□□□□□ -2.28
NUP54-208ENST00000508604 G3V318 75 aa0.82□□□□□ -2.28
NUP54-208ENST00000508604 INE1O15225 51 aa0.82□□□□□ -2.28
NUP54-208ENST00000508604 APELAP0DMC3 54 aa0.82□□□□□ -2.28
NUP54-208ENST00000508604 DEFB110Q30KQ9 67 aa0.82□□□□□ -2.28
NUP54-208ENST00000508604 Q6ZRX8 168 aa0.82□□□□□ -2.28
NUP54-208ENST00000508604 PLAC4Q8WY50 150 aa0.82□□□□□ -2.28
NUP54-208ENST00000508604 CRIPTQ9P021 101 aa0.82□□□□□ -2.28
NUP54-208ENST00000508604 Q9Y3F1 56 aa0.82□□□□□ -2.28
NUP54-208ENST00000508604 DOPEY2Q9Y3R5 2298 aa0.82□□□□□ -2.28
NUP54-208ENST00000508604 NAV3Q8IVL0 2385 aa0.82□□□□□ -2.28
NUP54-208ENST00000508604 H0YAA0 97 aa0.81□□□□□ -2.28
NUP54-208ENST00000508604 CLPSL2Q6UWE3 100 aa0.81□□□□□ -2.28
NUP54-208ENST00000508604 H3BUA1 57 aa0.81□□□□□ -2.28
NUP54-208ENST00000508604 TPRXLQ17RH7 258 aa0.81□□□□□ -2.28
NUP54-208ENST00000508604 DEFB109BQ30KR1 87 aa0.81□□□□□ -2.28
NUP54-208ENST00000508604 C10orf99Q6UWK7 81 aa0.81□□□□□ -2.28
NUP54-208ENST00000508604 Q6ZSA8 131 aa0.81□□□□□ -2.28
NUP54-208ENST00000508604 SPACA4Q8TDM5 124 aa0.81□□□□□ -2.28
NUP54-208ENST00000508604 USMG5Q96IX5 58 aa0.81□□□□□ -2.28
NUP54-208ENST00000508604 ICE1Q9Y2F5 2266 aa0.81□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms