RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 COX17Q14061 63 aa4.67□□□□□ -1.66
NUP54-204ENST00000506098 C10orf25Q5T742 122 aa4.67□□□□□ -1.66
NUP54-204ENST00000506098 C9orf163Q8N9P6 203 aa4.67□□□□□ -1.66
NUP54-204ENST00000506098 TTTY13Q9BZ97 58 aa4.67□□□□□ -1.66
NUP54-204ENST00000506098 C6orf48Q9UBA6 75 aa4.67□□□□□ -1.66
NUP54-204ENST00000506098 TP73-AS1Q9UF72 201 aa4.67□□□□□ -1.66
NUP54-204ENST00000506098 A0A0J9YXY3 114 aa4.66□□□□□ -1.66
NUP54-204ENST00000506098 A0A1B0GVY2 172 aa4.66□□□□□ -1.66
NUP54-204ENST00000506098 ZNF815PA8K554 130 aa4.66□□□□□ -1.66
NUP54-204ENST00000506098 OXTP01178 125 aa4.66□□□□□ -1.66
NUP54-204ENST00000506098 TLX1NBP0CAT3 122 aa4.66□□□□□ -1.66
NUP54-204ENST00000506098 LORP23490 312 aaPredicted RBP4.66□□□□□ -1.66
NUP54-204ENST00000506098 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.65□□□□□ -1.67
NUP54-204ENST00000506098 EIF4EBP3O60516 100 aaPredicted RBP4.65□□□□□ -1.67
NUP54-204ENST00000506098 TIMM17BO60830 172 aa4.65□□□□□ -1.67
NUP54-204ENST00000506098 TCL1BO95988 128 aa4.65□□□□□ -1.67
NUP54-204ENST00000506098 PSMB2P49721 201 aa4.65□□□□□ -1.67
NUP54-204ENST00000506098 DNAH5Q8TE73 4624 aa4.65□□□□□ -1.67
NUP54-204ENST00000506098 TRBV10-2A0A0K0K1G8 114 aa4.64□□□□□ -1.67
NUP54-204ENST00000506098 K7ERJ3 54 aa4.64□□□□□ -1.67
NUP54-204ENST00000506098 KRTAP10-2P60368 255 aa4.64□□□□□ -1.67
NUP54-204ENST00000506098 RPL18AQ02543 176 aaKnown RBP4.64□□□□□ -1.67
NUP54-204ENST00000506098 C9orf116Q5BN46 136 aaPredicted RBP4.64□□□□□ -1.67
NUP54-204ENST00000506098 LITAFQ99732 161 aa4.64□□□□□ -1.67
NUP54-204ENST00000506098 PKHD1P08F94 4074 aa4.63□□□□□ -1.67
NUP54-204ENST00000506098 IGLV5-52A0A0A0MRZ9 124 aa4.63□□□□□ -1.67
NUP54-204ENST00000506098 LOC107984156A0A0G2JMH3 177 aa4.63□□□□□ -1.67
NUP54-204ENST00000506098 hADV29S1A0JD25 119 aa4.63□□□□□ -1.67
NUP54-204ENST00000506098 CIRBPQ14011 172 aaKnown RBP4.63□□□□□ -1.67
NUP54-204ENST00000506098 ATXN8Q156A1 80 aa4.63□□□□□ -1.67
NUP54-204ENST00000506098 ARL17AQ8IVW1 177 aa4.63□□□□□ -1.67
NUP54-204ENST00000506098 HIST1H4GQ99525 98 aa4.63□□□□□ -1.67
NUP54-204ENST00000506098 DNAH8Q96JB1 4490 aa4.63□□□□□ -1.67
NUP54-204ENST00000506098 RYR3Q15413 4870 aa4.62□□□□□ -1.67
NUP54-204ENST00000506098 LINC00158P58513 81 aa4.62□□□□□ -1.67
NUP54-204ENST00000506098 ADAMTSL4-AS1Q5T5F5 129 aa4.62□□□□□ -1.67
NUP54-204ENST00000506098 SCGB1D4Q6XE38 83 aa4.62□□□□□ -1.67
NUP54-204ENST00000506098 Q6ZRP5 223 aa4.62□□□□□ -1.67
NUP54-204ENST00000506098 DSCR8Q96T75 97 aa4.62□□□□□ -1.67
NUP54-204ENST00000506098 C16orf90A8MZG2 172 aa4.61□□□□□ -1.67
NUP54-204ENST00000506098 NDUFC1O43677 76 aa4.61□□□□□ -1.67
NUP54-204ENST00000506098 MIR7-3HGQ8N6C7 128 aa4.61□□□□□ -1.67
NUP54-204ENST00000506098 A0A096LNI7 61 aa4.6□□□□□ -1.67
NUP54-204ENST00000506098 FUSP35637 526 aaKnown RBP eCLIP4.6□□□□□ -1.67
NUP54-204ENST00000506098 SERTAD4-AS1Q5TG53 156 aa4.6□□□□□ -1.67
NUP54-204ENST00000506098 BRK1Q8WUW1 75 aa4.6□□□□□ -1.67
NUP54-204ENST00000506098 SND1-IT1Q9HBX3 110 aa4.6□□□□□ -1.67
NUP54-204ENST00000506098 PLA2G2DQ9UNK4 145 aa4.6□□□□□ -1.67
NUP54-204ENST00000506098 A0A0B4J2C4 111 aa4.59□□□□□ -1.67
NUP54-204ENST00000506098 C9orf129Q5T035 196 aaKnown RBP4.59□□□□□ -1.67
NUP54-204ENST00000506098 SOSTDC1Q6X4U4 206 aa4.59□□□□□ -1.67
NUP54-204ENST00000506098 Q6ZSA8 131 aa4.59□□□□□ -1.67
NUP54-204ENST00000506098 DAND5Q8N907 189 aa4.59□□□□□ -1.67
NUP54-204ENST00000506098 LINC00308Q8TCZ7 52 aa4.59□□□□□ -1.67
NUP54-204ENST00000506098 LINC00474Q9P2X8 69 aa4.59□□□□□ -1.67
NUP54-204ENST00000506098 NDUFS5O43920 106 aa4.58□□□□□ -1.68
NUP54-204ENST00000506098 MUSTN1Q8IVN3 82 aa4.58□□□□□ -1.68
NUP54-204ENST00000506098 SPACA4Q8TDM5 124 aa4.58□□□□□ -1.68
NUP54-204ENST00000506098 IGLV5-37A0A075B6J1 123 aa4.57□□□□□ -1.68
NUP54-204ENST00000506098 PANO1I0J062 215 aa4.57□□□□□ -1.68
NUP54-204ENST00000506098 KRTAP10-1P60331 282 aa4.57□□□□□ -1.68
NUP54-204ENST00000506098 KRTAP7-1Q8IUC3 87 aa4.57□□□□□ -1.68
NUP54-204ENST00000506098 XAGE1AQ9HD64 81 aa4.57□□□□□ -1.68
NUP54-204ENST00000506098 PRO1854Q9UHT4 67 aa4.57□□□□□ -1.68
NUP54-204ENST00000506098 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.57□□□□□ -1.68
NUP54-204ENST00000506098 DYNC1H1Q14204 4646 aaKnown RBP4.57□□□□□ -1.68
NUP54-204ENST00000506098 IGKV2-24A0A0C4DH68 120 aa4.56□□□□□ -1.68
NUP54-204ENST00000506098 CHTF8P0CG12 524 aa4.56□□□□□ -1.68
NUP54-204ENST00000506098 Q8NDZ9 215 aa4.56□□□□□ -1.68
NUP54-204ENST00000506098 LRP1BQ9NZR2 4599 aa4.55□□□□□ -1.68
NUP54-204ENST00000506098 A0A1W2PNN7 141 aa4.55□□□□□ -1.68
NUP54-204ENST00000506098 Q6JHZ5 121 aa4.55□□□□□ -1.68
NUP54-204ENST00000506098 FP248Q71RG6 208 aaPredicted RBP4.55□□□□□ -1.68
NUP54-204ENST00000506098 KTN1-AS1Q86SY8 53 aa4.55□□□□□ -1.68
NUP54-204ENST00000506098 PLAC8Q9NZF1 115 aa4.55□□□□□ -1.68
NUP54-204ENST00000506098 FAM30AQ9NZY2 134 aa4.55□□□□□ -1.68
NUP54-204ENST00000506098 A0A087WYN8 130 aa4.54□□□□□ -1.68
NUP54-204ENST00000506098 FAM168BA1KXE4 195 aa4.54□□□□□ -1.68
NUP54-204ENST00000506098 COX6CP09669 75 aa4.54□□□□□ -1.68
NUP54-204ENST00000506098 INAFM2P0DMQ5 153 aa4.54□□□□□ -1.68
NUP54-204ENST00000506098 ATP5EP2Q5VTU8 51 aa4.54□□□□□ -1.68
NUP54-204ENST00000506098 IGKV2-28A0A075B6P5 120 aa4.53□□□□□ -1.68
NUP54-204ENST00000506098 TEX49A0A1B0GTD5 131 aa4.53□□□□□ -1.68
NUP54-204ENST00000506098 M0R378 163 aa4.53□□□□□ -1.68
NUP54-204ENST00000506098 IGKV2D-28P01615 120 aa4.53□□□□□ -1.68
NUP54-204ENST00000506098 CFC1BP0CG36 223 aa4.53□□□□□ -1.68
NUP54-204ENST00000506098 CFC1P0CG37 223 aa4.53□□□□□ -1.68
NUP54-204ENST00000506098 KLKP1Q107X0 134 aa4.53□□□□□ -1.68
NUP54-204ENST00000506098 C22orf24Q9Y442 160 aa4.53□□□□□ -1.68
NUP54-204ENST00000506098 TRBV10-3A0A0K0K1G6 114 aa4.52□□□□□ -1.69
NUP54-204ENST00000506098 H3BS24 57 aa4.52□□□□□ -1.69
NUP54-204ENST00000506098 PRR3P79522 188 aaKnown RBP4.52□□□□□ -1.69
NUP54-204ENST00000506098 LINC00337Q8N6G1 96 aa4.52□□□□□ -1.69
NUP54-204ENST00000506098 NKAPP1Q8N9T2 125 aa4.52□□□□□ -1.69
NUP54-204ENST00000506098 CIRBP-AS1Q8TBR5 109 aa4.52□□□□□ -1.69
NUP54-204ENST00000506098 RBM12B-AS1Q9P1G2 102 aa4.52□□□□□ -1.69
NUP54-204ENST00000506098 APOBP04114 4563 aaKnown RBP4.51□□□□□ -1.69
NUP54-204ENST00000506098 TRAV13-2A0A0B4J235 113 aa4.51□□□□□ -1.69
NUP54-204ENST00000506098 IGLV6-57P01721 117 aa4.51□□□□□ -1.69
NUP54-204ENST00000506098 CCKP06307 115 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms