RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 COX7BP24311 80 aa10.9□□□□□ -0.66
CCDC88B-210ENST00000494566 GVQW2A0A096LPI5 108 aaPredicted RBP10.89□□□□□ -0.67
CCDC88B-210ENST00000494566 TMEM258P61165 79 aa10.89□□□□□ -0.67
CCDC88B-210ENST00000494566 H3BNG1 76 aa10.89□□□□□ -0.67
CCDC88B-210ENST00000494566 TM2D3Q9BRN9 247 aa10.88□□□□□ -0.67
CCDC88B-210ENST00000494566 COL7A1Q02388 2944 aa10.88□□□□□ -0.67
CCDC88B-210ENST00000494566 DNAH10Q8IVF4 4471 aa10.87□□□□□ -0.67
CCDC88B-210ENST00000494566 SRRM2Q9UQ35 2752 aaKnown RBP10.87□□□□□ -0.67
CCDC88B-210ENST00000494566 Q6ZRP5 223 aa10.87□□□□□ -0.67
CCDC88B-210ENST00000494566 RPL37AP8A6NKH3 93 aa10.86□□□□□ -0.67
CCDC88B-210ENST00000494566 VPREB1P12018 145 aa10.86□□□□□ -0.67
CCDC88B-210ENST00000494566 STAB2Q8WWQ8 2551 aa10.85□□□□□ -0.67
CCDC88B-210ENST00000494566 BPY2O14599 106 aa10.85□□□□□ -0.67
CCDC88B-210ENST00000494566 CASC10Q5T4H9 136 aa10.85□□□□□ -0.67
CCDC88B-210ENST00000494566 LINC01556Q5JQF7 62 aa10.84□□□□□ -0.67
CCDC88B-210ENST00000494566 TENM2Q9NT68 2774 aa10.83□□□□□ -0.68
CCDC88B-210ENST00000494566 ATP5EP2Q5VTU8 51 aa10.83□□□□□ -0.68
CCDC88B-210ENST00000494566 DNAH1Q9P2D7 4330 aa10.82□□□□□ -0.68
CCDC88B-210ENST00000494566 NDUFC2-KCTD14E9PQ53 114 aa10.82□□□□□ -0.68
CCDC88B-210ENST00000494566 F8WEM9 126 aa10.82□□□□□ -0.68
CCDC88B-210ENST00000494566 LOC110117498A0A087WWA1 95 aa10.81□□□□□ -0.68
CCDC88B-210ENST00000494566 LINC00588Q9Y4M8 146 aa10.81□□□□□ -0.68
CCDC88B-210ENST00000494566 FAM236DA0A1B0GTK5 79 aa10.8□□□□□ -0.68
CCDC88B-210ENST00000494566 FAM168BA1KXE4 195 aa10.8□□□□□ -0.68
CCDC88B-210ENST00000494566 FAM236CP0DP71 79 aa10.8□□□□□ -0.68
CCDC88B-210ENST00000494566 A0A0G2JQZ4 141 aa10.8□□□□□ -0.68
CCDC88B-210ENST00000494566 A0A1W2PNN7 141 aa10.8□□□□□ -0.68
CCDC88B-210ENST00000494566 SYCNQ0VAF6 134 aa10.79□□□□□ -0.68
CCDC88B-210ENST00000494566 ELOF1P60002 83 aaKnown RBP10.79□□□□□ -0.68
CCDC88B-210ENST00000494566 SERTAD4-AS1Q5TG53 156 aa10.79□□□□□ -0.68
CCDC88B-210ENST00000494566 H7BZZ5 65 aa10.78□□□□□ -0.68
CCDC88B-210ENST00000494566 M0R378 163 aa10.77□□□□□ -0.69
CCDC88B-210ENST00000494566 TRAV7A0A075B6U4 112 aa10.77□□□□□ -0.69
CCDC88B-210ENST00000494566 DNAH9Q9NYC9 4486 aa10.77□□□□□ -0.69
CCDC88B-210ENST00000494566 K7EIL1 84 aa10.76□□□□□ -0.69
CCDC88B-210ENST00000494566 DNAH10OSP0CZ25 163 aa10.75□□□□□ -0.69
CCDC88B-210ENST00000494566 Q5XG85 94 aa10.75□□□□□ -0.69
CCDC88B-210ENST00000494566 TRBV7-4A0A0J9YYF1 115 aa10.75□□□□□ -0.69
CCDC88B-210ENST00000494566 NKAPP1Q8N9T2 125 aa10.74□□□□□ -0.69
CCDC88B-210ENST00000494566 RPS28P62857 69 aaKnown RBP10.74□□□□□ -0.69
CCDC88B-210ENST00000494566 ST20-AS1Q8NBB2 130 aa10.74□□□□□ -0.69
CCDC88B-210ENST00000494566 C5orf47Q569G3 176 aa10.74□□□□□ -0.69
CCDC88B-210ENST00000494566 NREPQ16612 68 aa10.73□□□□□ -0.69
CCDC88B-210ENST00000494566 LINC00528Q8N1L1 170 aa10.72□□□□□ -0.69
CCDC88B-210ENST00000494566 LINC00474Q9P2X8 69 aa10.72□□□□□ -0.69
CCDC88B-210ENST00000494566 DNAH7Q8WXX0 4024 aa10.71□□□□□ -0.69
CCDC88B-210ENST00000494566 C7orf33Q8WU49 177 aa10.71□□□□□ -0.7
CCDC88B-210ENST00000494566 DEFB116Q30KQ4 102 aa10.69□□□□□ -0.7
CCDC88B-210ENST00000494566 FAM30AQ9NZY2 134 aa10.69□□□□□ -0.7
CCDC88B-210ENST00000494566 CXCL6P80162 114 aa10.68□□□□□ -0.7
CCDC88B-210ENST00000494566 Q8N377 158 aa10.68□□□□□ -0.7
CCDC88B-210ENST00000494566 LRCOL1A6NCL2 159 aa10.67□□□□□ -0.7
CCDC88B-210ENST00000494566 MPLKIPQ8TAP9 179 aa10.66□□□□□ -0.7
CCDC88B-210ENST00000494566 PDE6GP18545 87 aa10.65□□□□□ -0.7
CCDC88B-210ENST00000494566 HIGD2AQ9BW72 106 aa10.65□□□□□ -0.7
CCDC88B-210ENST00000494566 IGKV4-1P06312 121 aa10.64□□□□□ -0.71
CCDC88B-210ENST00000494566 KRTAP7-1Q8IUC3 87 aa10.64□□□□□ -0.71
CCDC88B-210ENST00000494566 ERC2-IT1O76042 136 aa10.64□□□□□ -0.71
CCDC88B-210ENST00000494566 TMEM254Q8TBM7 123 aa10.64□□□□□ -0.71
CCDC88B-210ENST00000494566 TRBV7-6A0A0J9YX20 115 aa10.62□□□□□ -0.71
CCDC88B-210ENST00000494566 PRR4Q16378 134 aa10.62□□□□□ -0.71
CCDC88B-210ENST00000494566 KRTAP1-5Q9BYS1 174 aa10.62□□□□□ -0.71
CCDC88B-210ENST00000494566 Q9BRP9 147 aa10.62□□□□□ -0.71
CCDC88B-210ENST00000494566 UBE2BP63146 152 aa10.61□□□□□ -0.71
CCDC88B-210ENST00000494566 KLKP1Q107X0 134 aa10.61□□□□□ -0.71
CCDC88B-210ENST00000494566 FAM229BQ4G0N7 80 aa10.61□□□□□ -0.71
CCDC88B-210ENST00000494566 SMIM29Q86T20 159 aa10.61□□□□□ -0.71
CCDC88B-210ENST00000494566 KCNQ1DNQ9H478 68 aa10.61□□□□□ -0.71
CCDC88B-210ENST00000494566 PLECQ15149 4684 aaKnown RBP10.61□□□□□ -0.71
CCDC88B-210ENST00000494566 IGKV2-24A0A0C4DH68 120 aa10.6□□□□□ -0.71
CCDC88B-210ENST00000494566 ETDCA0A1B0GVM5 59 aa10.6□□□□□ -0.71
CCDC88B-210ENST00000494566 LINC00336Q6ZUF6 198 aa10.59□□□□□ -0.71
CCDC88B-210ENST00000494566 FP248Q71RG6 208 aaPredicted RBP10.59□□□□□ -0.71
CCDC88B-210ENST00000494566 A0A1W2PNM2 257 aa10.58□□□□□ -0.72
CCDC88B-210ENST00000494566 SERP1Q9Y6X1 66 aa10.58□□□□□ -0.72
CCDC88B-210ENST00000494566 F8WDY8 70 aa10.57□□□□□ -0.72
CCDC88B-210ENST00000494566 TLX1NBP0CAT3 122 aa10.57□□□□□ -0.72
CCDC88B-210ENST00000494566 C1orf137Q5JT78 98 aa10.57□□□□□ -0.72
CCDC88B-210ENST00000494566 IGLV1-50A0A075B6I6 118 aa10.56□□□□□ -0.72
CCDC88B-210ENST00000494566 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.55□□□□□ -0.72
CCDC88B-210ENST00000494566 H3BQ85 93 aa10.55□□□□□ -0.72
CCDC88B-210ENST00000494566 Q6ZRX8 168 aa10.54□□□□□ -0.72
CCDC88B-210ENST00000494566 FUSP35637 526 aaKnown RBP eCLIP10.54□□□□□ -0.72
CCDC88B-210ENST00000494566 PRLHP81277 87 aa10.54□□□□□ -0.72
CCDC88B-210ENST00000494566 MRPL55Q7Z7F7 128 aaKnown RBP10.53□□□□□ -0.72
CCDC88B-210ENST00000494566 A0A096LNI7 61 aa10.53□□□□□ -0.72
CCDC88B-210ENST00000494566 KRTAP4-16G5E9R7 235 aaPredicted RBP10.52□□□□□ -0.72
CCDC88B-210ENST00000494566 K7EQZ3 153 aa10.51□□□□□ -0.73
CCDC88B-210ENST00000494566 PRYO14603 147 aa10.51□□□□□ -0.73
CCDC88B-210ENST00000494566 OCR1Q9BZK8 76 aa10.51□□□□□ -0.73
CCDC88B-210ENST00000494566 PSCAO43653 123 aa10.51□□□□□ -0.73
CCDC88B-210ENST00000494566 UBE2DNLQ8IWF7 75 aa10.51□□□□□ -0.73
CCDC88B-210ENST00000494566 MDFIQ99750 246 aa10.51□□□□□ -0.73
CCDC88B-210ENST00000494566 A0A0U1RQV1 116 aa10.5□□□□□ -0.73
CCDC88B-210ENST00000494566 EPM2AB3EWF7 344 aa10.5□□□□□ -0.73
CCDC88B-210ENST00000494566 PLA2G2DQ9UNK4 145 aa10.5□□□□□ -0.73
CCDC88B-210ENST00000494566 WFDC13Q8IUB5 93 aa10.49□□□□□ -0.73
CCDC88B-210ENST00000494566 PKIGQ9Y2B9 76 aa10.49□□□□□ -0.73
CCDC88B-210ENST00000494566 RPL37AP61513 92 aaKnown RBP10.48□□□□□ -0.73
CCDC88B-210ENST00000494566 BRK1Q8WUW1 75 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms