RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 SLC25A20O43772 301 aa6.58□□□□□ -1.36
COL6A3-213ENST00000493475 PLNP26678 52 aa6.58□□□□□ -1.36
COL6A3-213ENST00000493475 DDTP30046 118 aa6.58□□□□□ -1.36
COL6A3-213ENST00000493475 HINT1P49773 126 aaPredicted RBP6.58□□□□□ -1.36
COL6A3-213ENST00000493475 LINC00483Q53H64 154 aa6.58□□□□□ -1.36
COL6A3-213ENST00000493475 S100A7L2Q5SY68 101 aa6.58□□□□□ -1.36
COL6A3-213ENST00000493475 YPEL4Q96NS1 127 aa6.58□□□□□ -1.36
COL6A3-213ENST00000493475 IGLV9-49A0A0B4J1Y8 123 aa6.57□□□□□ -1.36
COL6A3-213ENST00000493475 TRBV10-2A0A0K0K1G8 114 aa6.57□□□□□ -1.36
COL6A3-213ENST00000493475 LINC00310P59036 64 aa6.57□□□□□ -1.36
COL6A3-213ENST00000493475 MOBPQ13875 183 aa6.57□□□□□ -1.36
COL6A3-213ENST00000493475 ASB16-AS1Q495Z4 193 aa6.57□□□□□ -1.36
COL6A3-213ENST00000493475 SPANXB1Q9NS25 103 aaPredicted RBP6.57□□□□□ -1.36
COL6A3-213ENST00000493475 H0Y8G0 127 aa6.56□□□□□ -1.36
COL6A3-213ENST00000493475 NMUP48645 174 aa6.56□□□□□ -1.36
COL6A3-213ENST00000493475 KRTAP13-3Q3SY46 172 aa6.56□□□□□ -1.36
COL6A3-213ENST00000493475 LEPROTO15243 131 aa6.55□□□□□ -1.36
COL6A3-213ENST00000493475 LGALS3P17931 250 aaKnown RBP6.55□□□□□ -1.36
COL6A3-213ENST00000493475 C9orf153Q5TBE3 101 aa6.55□□□□□ -1.36
COL6A3-213ENST00000493475 COLCA2A8K830 154 aa6.54□□□□□ -1.36
COL6A3-213ENST00000493475 B5MCH6 92 aa6.54□□□□□ -1.36
COL6A3-213ENST00000493475 KRTAP4-16G5E9R7 235 aaPredicted RBP6.54□□□□□ -1.36
COL6A3-213ENST00000493475 LEPROTL1O95214 131 aa6.54□□□□□ -1.36
COL6A3-213ENST00000493475 SLC25A34Q6PIV7 304 aa6.54□□□□□ -1.36
COL6A3-213ENST00000493475 Q6ZRX8 168 aa6.54□□□□□ -1.36
COL6A3-213ENST00000493475 HSPB8Q9UJY1 196 aa6.54□□□□□ -1.36
COL6A3-213ENST00000493475 LOC107984156A0A0G2JMH3 177 aa6.53□□□□□ -1.36
COL6A3-213ENST00000493475 ARL17AQ8IVW1 177 aa6.53□□□□□ -1.36
COL6A3-213ENST00000493475 TRAV23DV6A0A075B6W5 121 aa6.52□□□□□ -1.37
COL6A3-213ENST00000493475 C5orf52A6NGY3 159 aa6.52□□□□□ -1.37
COL6A3-213ENST00000493475 J3QQQ9 107 aa6.52□□□□□ -1.37
COL6A3-213ENST00000493475 NDUFC2O95298 119 aa6.52□□□□□ -1.37
COL6A3-213ENST00000493475 TMEM238LA0A1B0GVL6 79 aa6.51□□□□□ -1.37
COL6A3-213ENST00000493475 DPM2O94777 84 aa6.51□□□□□ -1.37
COL6A3-213ENST00000493475 LIMD2Q9BT23 127 aa6.51□□□□□ -1.37
COL6A3-213ENST00000493475 MUC17Q685J3 4493 aa6.5□□□□□ -1.37
COL6A3-213ENST00000493475 Q8N377 158 aa6.5□□□□□ -1.37
COL6A3-213ENST00000493475 ZNF73O43830 326 aaPredicted RBP6.49□□□□□ -1.37
COL6A3-213ENST00000493475 IGLV6-57P01721 117 aa6.49□□□□□ -1.37
COL6A3-213ENST00000493475 IGKCP01834 107 aa6.49□□□□□ -1.37
COL6A3-213ENST00000493475 TRGC2P03986 189 aa6.49□□□□□ -1.37
COL6A3-213ENST00000493475 Q9BRP9 147 aa6.48□□□□□ -1.37
COL6A3-213ENST00000493475 ERC2-IT1O76042 136 aa6.47□□□□□ -1.37
COL6A3-213ENST00000493475 TSPEAR-AS2P59090 65 aa6.46□□□□□ -1.38
COL6A3-213ENST00000493475 DHRS4-AS1Q9P1J3 65 aa6.46□□□□□ -1.38
COL6A3-213ENST00000493475 H3BS24 57 aa6.45□□□□□ -1.38
COL6A3-213ENST00000493475 SERF1AO75920 110 aa6.45□□□□□ -1.38
COL6A3-213ENST00000493475 FABP4P15090 132 aa6.45□□□□□ -1.38
COL6A3-213ENST00000493475 OR13C6PQ8NH95 151 aa6.45□□□□□ -1.38
COL6A3-213ENST00000493475 LAMTOR3Q9UHA4 124 aa6.45□□□□□ -1.38
COL6A3-213ENST00000493475 SPANXCQ9NY87 97 aa6.44□□□□□ -1.38
COL6A3-213ENST00000493475 NPC2P61916 151 aa6.43□□□□□ -1.38
COL6A3-213ENST00000493475 A0A0J9YXY3 114 aa6.42□□□□□ -1.38
COL6A3-213ENST00000493475 E9PLD3 99 aa6.42□□□□□ -1.38
COL6A3-213ENST00000493475 COPS9Q8WXC6 57 aa6.42□□□□□ -1.38
COL6A3-213ENST00000493475 LINC00518Q8N0U6 118 aa6.41□□□□□ -1.38
COL6A3-213ENST00000493475 PMCHL2Q9BQD1 86 aa6.41□□□□□ -1.38
COL6A3-213ENST00000493475 SPANXDQ9BXN6 97 aa6.41□□□□□ -1.38
COL6A3-213ENST00000493475 HIST1H2BKO60814 126 aa6.4□□□□□ -1.38
COL6A3-213ENST00000493475 TIMM17BO60830 172 aa6.4□□□□□ -1.38
COL6A3-213ENST00000493475 HIST1H2BJP06899 126 aa6.4□□□□□ -1.38
COL6A3-213ENST00000493475 HIST1H2BOP23527 126 aa6.4□□□□□ -1.38
COL6A3-213ENST00000493475 HIST1H2BBP33778 126 aa6.4□□□□□ -1.38
COL6A3-213ENST00000493475 HIST1H2BDP58876 126 aa6.4□□□□□ -1.38
COL6A3-213ENST00000493475 HIST1H2BCP62807 126 aa6.4□□□□□ -1.38
COL6A3-213ENST00000493475 TAL2Q16559 108 aa6.4□□□□□ -1.38
COL6A3-213ENST00000493475 HIST2H2BEQ16778 126 aa6.4□□□□□ -1.38
COL6A3-213ENST00000493475 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.4□□□□□ -1.38
COL6A3-213ENST00000493475 ST20-AS1Q8NBB2 130 aa6.4□□□□□ -1.38
COL6A3-213ENST00000493475 HIST1H2BHQ93079 126 aa6.4□□□□□ -1.38
COL6A3-213ENST00000493475 HIST1H2BNQ99877 126 aa6.4□□□□□ -1.38
COL6A3-213ENST00000493475 HIST1H2BMQ99879 126 aa6.4□□□□□ -1.38
COL6A3-213ENST00000493475 SPRR1BP22528 89 aa6.39□□□□□ -1.39
COL6A3-213ENST00000493475 PRO1933Q9H354 126 aa6.39□□□□□ -1.39
COL6A3-213ENST00000493475 CFC1BP0CG36 223 aa6.38□□□□□ -1.39
COL6A3-213ENST00000493475 COX7BP24311 80 aa6.38□□□□□ -1.39
COL6A3-213ENST00000493475 CD164Q04900 197 aa6.38□□□□□ -1.39
COL6A3-213ENST00000493475 HRCT1Q6UXD1 115 aa6.38□□□□□ -1.39
COL6A3-213ENST00000493475 LINC00308Q8TCZ7 52 aa6.38□□□□□ -1.39
COL6A3-213ENST00000493475 H7C2G1 150 aa6.37□□□□□ -1.39
COL6A3-213ENST00000493475 ADAMTSL4-AS1Q5T5F5 129 aa6.37□□□□□ -1.39
COL6A3-213ENST00000493475 SOSTDC1Q6X4U4 206 aa6.37□□□□□ -1.39
COL6A3-213ENST00000493475 IGLV8-61A0A075B6I0 122 aa6.36□□□□□ -1.39
COL6A3-213ENST00000493475 TEX49A0A1B0GTD5 131 aa6.36□□□□□ -1.39
COL6A3-213ENST00000493475 ZNF815PA8K554 130 aa6.36□□□□□ -1.39
COL6A3-213ENST00000493475 ELOF1P60002 83 aaKnown RBP6.36□□□□□ -1.39
COL6A3-213ENST00000493475 SYS1-DBNDD2H3BUS1 97 aa6.35□□□□□ -1.39
COL6A3-213ENST00000493475 AKR1D1P51857 326 aa6.35□□□□□ -1.39
COL6A3-213ENST00000493475 KRTAP4-1Q9BYQ7 146 aa6.35□□□□□ -1.39
COL6A3-213ENST00000493475 FSIP2Q5CZC0 6907 aa6.35□□□□□ -1.39
COL6A3-213ENST00000493475 TRBV7-6A0A0J9YX20 115 aa6.34□□□□□ -1.39
COL6A3-213ENST00000493475 C9orf92A6NGG3 77 aa6.34□□□□□ -1.39
COL6A3-213ENST00000493475 C6orf99Q4VX62 202 aa6.34□□□□□ -1.39
COL6A3-213ENST00000493475 PCOTHQ58A44 107 aa6.34□□□□□ -1.39
COL6A3-213ENST00000493475 COA6Q5JTJ3 125 aaKnown RBP6.34□□□□□ -1.39
COL6A3-213ENST00000493475 SCGB1D4Q6XE38 83 aa6.34□□□□□ -1.39
COL6A3-213ENST00000493475 DEFB105AQ8NG35 78 aa6.34□□□□□ -1.39
COL6A3-213ENST00000493475 NHP2Q9NX24 153 aaKnown RBP6.34□□□□□ -1.39
COL6A3-213ENST00000493475 A0A1B0GWB2 263 aa6.33□□□□□ -1.4
COL6A3-213ENST00000493475 A4D1N5 150 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms