RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 CHTF8P0CG12 524 aa6.08□□□□□ -1.44
USP54-214ENST00000492357 INAFM2P0DMQ5 153 aa6.08□□□□□ -1.44
USP54-214ENST00000492357 UBE2V1Q13404 147 aa6.08□□□□□ -1.44
USP54-214ENST00000492357 GTF2H5Q6ZYL4 71 aa6.08□□□□□ -1.44
USP54-214ENST00000492357 DPH3Q96FX2 82 aa6.08□□□□□ -1.44
USP54-214ENST00000492357 H0Y9J4 135 aa6.07□□□□□ -1.44
USP54-214ENST00000492357 LINC01620Q4KN68 170 aa6.07□□□□□ -1.44
USP54-214ENST00000492357 H3BQ85 93 aa6.06□□□□□ -1.44
USP54-214ENST00000492357 H7C2G1 150 aa6.06□□□□□ -1.44
USP54-214ENST00000492357 PANO1I0J062 215 aa6.06□□□□□ -1.44
USP54-214ENST00000492357 TRACP01848 142 aa6.06□□□□□ -1.44
USP54-214ENST00000492357 SCGB1C2P0DMR2 95 aa6.06□□□□□ -1.44
USP54-214ENST00000492357 ELOF1P60002 83 aaKnown RBP6.06□□□□□ -1.44
USP54-214ENST00000492357 C6orf99Q4VX62 202 aa6.06□□□□□ -1.44
USP54-214ENST00000492357 REG3GQ6UW15 175 aa6.06□□□□□ -1.44
USP54-214ENST00000492357 KRTAP4-16G5E9R7 235 aaPredicted RBP6.05□□□□□ -1.44
USP54-214ENST00000492357 LST1O00453 97 aa6.05□□□□□ -1.44
USP54-214ENST00000492357 COX7BP24311 80 aa6.05□□□□□ -1.44
USP54-214ENST00000492357 KRTAP10-1P60331 282 aa6.05□□□□□ -1.44
USP54-214ENST00000492357 UBE2BP63146 152 aa6.05□□□□□ -1.44
USP54-214ENST00000492357 ATXN8Q156A1 80 aa6.05□□□□□ -1.44
USP54-214ENST00000492357 DHRS4-AS1Q9P1J3 65 aa6.05□□□□□ -1.44
USP54-214ENST00000492357 KMT2CQ8NEZ4 4911 aaKnown RBP6.05□□□□□ -1.44
USP54-214ENST00000492357 ETDCA0A1B0GVM5 59 aa6.04□□□□□ -1.44
USP54-214ENST00000492357 K7EP34 96 aa6.04□□□□□ -1.44
USP54-214ENST00000492357 SLC25A20O43772 301 aa6.04□□□□□ -1.44
USP54-214ENST00000492357 OCIAD2Q56VL3 154 aa6.04□□□□□ -1.44
USP54-214ENST00000492357 Q6ZRX8 168 aa6.04□□□□□ -1.44
USP54-214ENST00000492357 SPCS1Q9Y6A9 102 aa6.04□□□□□ -1.44
USP54-214ENST00000492357 HECTD4Q9Y4D8 3996 aa6.04□□□□□ -1.44
USP54-214ENST00000492357 GAGE10A6NGK3 116 aa6.03□□□□□ -1.44
USP54-214ENST00000492357 SCXQ7RTU7 201 aa6.03□□□□□ -1.44
USP54-214ENST00000492357 CIRBP-AS1Q8TBR5 109 aa6.03□□□□□ -1.44
USP54-214ENST00000492357 FAT2Q9NYQ8 4349 aa6.03□□□□□ -1.44
USP54-214ENST00000492357 BCE1O60756 84 aa6.02□□□□□ -1.45
USP54-214ENST00000492357 LINC00575Q6W349 94 aa6.02□□□□□ -1.45
USP54-214ENST00000492357 PHF5AQ7RTV0 110 aaKnown RBP6.02□□□□□ -1.45
USP54-214ENST00000492357 PPDPFLQ8WWR9 84 aa6.02□□□□□ -1.45
USP54-214ENST00000492357 NAA38Q9BRA0 125 aaKnown RBP6.02□□□□□ -1.45
USP54-214ENST00000492357 RPL37AP8A6NKH3 93 aa6.01□□□□□ -1.45
USP54-214ENST00000492357 B5MCH6 92 aa6.01□□□□□ -1.45
USP54-214ENST00000492357 TCL1BO95988 128 aa6.01□□□□□ -1.45
USP54-214ENST00000492357 DNAL4O96015 105 aa6.01□□□□□ -1.45
USP54-214ENST00000492357 LINC01600Q96MT4 127 aa6.01□□□□□ -1.45
USP54-214ENST00000492357 FAM30AQ9NZY2 134 aa6.01□□□□□ -1.45
USP54-214ENST00000492357 PKD1P98161 4303 aa6.01□□□□□ -1.45
USP54-214ENST00000492357 hADV29S1A0JD25 119 aa6□□□□□ -1.45
USP54-214ENST00000492357 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6□□□□□ -1.45
USP54-214ENST00000492357 DNAH11Q96DT5 4516 aa6□□□□□ -1.45
USP54-214ENST00000492357 H3BS24 57 aa5.99□□□□□ -1.45
USP54-214ENST00000492357 H3BT86 120 aa5.99□□□□□ -1.45
USP54-214ENST00000492357 CDK2AP2O75956 126 aa5.99□□□□□ -1.45
USP54-214ENST00000492357 FUSP35637 526 aaKnown RBP eCLIP5.99□□□□□ -1.45
USP54-214ENST00000492357 F8W1H4 67 aa5.98□□□□□ -1.45
USP54-214ENST00000492357 FAM19A1Q7Z5A9 133 aa5.98□□□□□ -1.45
USP54-214ENST00000492357 KRTAP13-1Q8IUC0 172 aa5.98□□□□□ -1.45
USP54-214ENST00000492357 CLEC2BQ92478 149 aa5.98□□□□□ -1.45
USP54-214ENST00000492357 PSORS1C2Q9UIG4 136 aa5.97□□□□□ -1.45
USP54-214ENST00000492357 H3BMG7 143 aa5.96□□□□□ -1.46
USP54-214ENST00000492357 TMEM256-PLSCR3K7ERE1 68 aa5.96□□□□□ -1.46
USP54-214ENST00000492357 UBE2AP49459 152 aa5.96□□□□□ -1.46
USP54-214ENST00000492357 C21orf62-AS1Q17RA5 79 aa5.96□□□□□ -1.46
USP54-214ENST00000492357 FAM218AQ96MZ4 157 aa5.96□□□□□ -1.46
USP54-214ENST00000492357 ORMDL1Q9P0S3 153 aa5.96□□□□□ -1.46
USP54-214ENST00000492357 ZNF861PO60384 105 aa5.95□□□□□ -1.46
USP54-214ENST00000492357 XGP55808 180 aa5.95□□□□□ -1.46
USP54-214ENST00000492357 KRTAP11-1Q8IUC1 163 aa5.95□□□□□ -1.46
USP54-214ENST00000492357 PRO0461Q9UI25 63 aa5.95□□□□□ -1.46
USP54-214ENST00000492357 ZNF706Q9Y5V0 76 aaPredicted RBP5.95□□□□□ -1.46
USP54-214ENST00000492357 DNAH5Q8TE73 4624 aa5.95□□□□□ -1.46
USP54-214ENST00000492357 IGLV5-48A0A075B6I7 105 aa5.94□□□□□ -1.46
USP54-214ENST00000492357 IGLV7-43P04211 117 aa5.94□□□□□ -1.46
USP54-214ENST00000492357 C1orf137Q5JT78 98 aa5.94□□□□□ -1.46
USP54-214ENST00000492357 SMCR5Q8TEV8 140 aa5.94□□□□□ -1.46
USP54-214ENST00000492357 Q9BRP9 147 aa5.94□□□□□ -1.46
USP54-214ENST00000492357 DNAH8Q96JB1 4490 aa5.94□□□□□ -1.46
USP54-214ENST00000492357 C9JAW5 83 aa5.93□□□□□ -1.46
USP54-214ENST00000492357 SPRR1BP22528 89 aa5.93□□□□□ -1.46
USP54-214ENST00000492357 Q6ZQY7 126 aa5.93□□□□□ -1.46
USP54-214ENST00000492357 ANKRD29Q8N6D5 301 aa5.93□□□□□ -1.46
USP54-214ENST00000492357 PRLHP81277 87 aa5.92□□□□□ -1.46
USP54-214ENST00000492357 RYR3Q15413 4870 aa5.92□□□□□ -1.46
USP54-214ENST00000492357 TEX49A0A1B0GTD5 131 aa5.91□□□□□ -1.46
USP54-214ENST00000492357 JMJD7-PLA2G4BH0Y9G9 81 aa5.91□□□□□ -1.46
USP54-214ENST00000492357 BAALC-AS2P0C853 105 aa5.91□□□□□ -1.46
USP54-214ENST00000492357 HIGD2AQ9BW72 106 aa5.91□□□□□ -1.46
USP54-214ENST00000492357 RPL37AP61513 92 aaKnown RBP5.9□□□□□ -1.46
USP54-214ENST00000492357 PLA2G1BP04054 148 aaKnown RBP5.89□□□□□ -1.47
USP54-214ENST00000492357 SPINK6Q6UWN8 80 aa5.89□□□□□ -1.47
USP54-214ENST00000492357 TEN1Q86WV5 123 aa5.89□□□□□ -1.47
USP54-214ENST00000492357 DYNC1H1Q14204 4646 aaKnown RBP5.88□□□□□ -1.47
USP54-214ENST00000492357 PDE6GP18545 87 aa5.88□□□□□ -1.47
USP54-214ENST00000492357 LINC01547P58512 204 aaPredicted RBP5.88□□□□□ -1.47
USP54-214ENST00000492357 LINC00483Q53H64 154 aa5.88□□□□□ -1.47
USP54-214ENST00000492357 ERC2-IT1O76042 136 aa5.87□□□□□ -1.47
USP54-214ENST00000492357 SPRR4Q96PI1 79 aa5.87□□□□□ -1.47
USP54-214ENST00000492357 PKHD1P08F94 4074 aa5.86□□□□□ -1.47
USP54-214ENST00000492357 NDUFV3P56181 108 aaKnown RBP5.86□□□□□ -1.47
USP54-214ENST00000492357 FAM229BQ4G0N7 80 aa5.86□□□□□ -1.47
USP54-214ENST00000492357 Q8N377 158 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms