RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 FLNAP21333 2647 aaKnown RBP3.91□□□□□ -1.78
VPS41-214ENST00000490924 TRAV23DV6A0A075B6W5 121 aa3.9□□□□□ -1.79
VPS41-214ENST00000490924 IGKV3D-7A0A0C4DH55 119 aa3.9□□□□□ -1.79
VPS41-214ENST00000490924 ATRQ13535 2644 aa3.9□□□□□ -1.79
VPS41-214ENST00000490924 SONP18583 2426 aaKnown RBP3.89□□□□□ -1.79
VPS41-214ENST00000490924 M0R378 163 aa3.89□□□□□ -1.79
VPS41-214ENST00000490924 ZNF73O43830 326 aaPredicted RBP3.89□□□□□ -1.79
VPS41-214ENST00000490924 LINC01547P58512 204 aaPredicted RBP3.89□□□□□ -1.79
VPS41-214ENST00000490924 C5orf47Q569G3 176 aa3.89□□□□□ -1.79
VPS41-214ENST00000490924 ANK2Q01484 3957 aa3.88□□□□□ -1.79
VPS41-214ENST00000490924 A0A087WVE0 104 aa3.88□□□□□ -1.79
VPS41-214ENST00000490924 A0A096LPF7 62 aa3.88□□□□□ -1.79
VPS41-214ENST00000490924 COX7BP24311 80 aa3.88□□□□□ -1.79
VPS41-214ENST00000490924 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.88□□□□□ -1.79
VPS41-214ENST00000490924 ENHOQ6UWT2 76 aa3.88□□□□□ -1.79
VPS41-214ENST00000490924 Q6ZQY7 126 aa3.88□□□□□ -1.79
VPS41-214ENST00000490924 Q6ZVQ6 151 aa3.88□□□□□ -1.79
VPS41-214ENST00000490924 FAM19A5Q7Z5A7 132 aaPredicted RBP3.88□□□□□ -1.79
VPS41-214ENST00000490924 C11orf68Q9H3H3 251 aaKnown RBP3.88□□□□□ -1.79
VPS41-214ENST00000490924 LAMTOR3Q9UHA4 124 aa3.88□□□□□ -1.79
VPS41-214ENST00000490924 TLX1NBP0CAT3 122 aa3.87□□□□□ -1.79
VPS41-214ENST00000490924 VPREB1P12018 145 aa3.87□□□□□ -1.79
VPS41-214ENST00000490924 UNQ6190/PRO20217Q6UXQ8 127 aa3.87□□□□□ -1.79
VPS41-214ENST00000490924 Q8NDZ9 215 aa3.87□□□□□ -1.79
VPS41-214ENST00000490924 SMR3AQ99954 134 aa3.87□□□□□ -1.79
VPS41-214ENST00000490924 C6orf48Q9UBA6 75 aa3.87□□□□□ -1.79
VPS41-214ENST00000490924 SERP1Q9Y6X1 66 aa3.87□□□□□ -1.79
VPS41-214ENST00000490924 HIVEP2P31629 2446 aa3.87□□□□□ -1.79
VPS41-214ENST00000490924 ANK3Q12955 4377 aaKnown RBP3.86□□□□□ -1.79
VPS41-214ENST00000490924 CUBNO60494 3623 aa3.86□□□□□ -1.79
VPS41-214ENST00000490924 COL6A5A8TX70 2615 aa3.86□□□□□ -1.79
VPS41-214ENST00000490924 IGLV5-37A0A075B6J1 123 aa3.86□□□□□ -1.79
VPS41-214ENST00000490924 FAM236DA0A1B0GTK5 79 aa3.86□□□□□ -1.79
VPS41-214ENST00000490924 H7BZZ5 65 aa3.86□□□□□ -1.79
VPS41-214ENST00000490924 FAM236CP0DP71 79 aa3.86□□□□□ -1.79
VPS41-214ENST00000490924 KRTAP10-3P60369 221 aa3.86□□□□□ -1.79
VPS41-214ENST00000490924 PRR3P79522 188 aaKnown RBP3.86□□□□□ -1.79
VPS41-214ENST00000490924 DEFB135Q30KP9 77 aa3.86□□□□□ -1.79
VPS41-214ENST00000490924 LINC01556Q5JQF7 62 aa3.86□□□□□ -1.79
VPS41-214ENST00000490924 C10orf25Q5T742 122 aa3.86□□□□□ -1.79
VPS41-214ENST00000490924 KRTAP26-1Q6PEX3 210 aa3.86□□□□□ -1.79
VPS41-214ENST00000490924 KCNQ1DNQ9H478 68 aa3.86□□□□□ -1.79
VPS41-214ENST00000490924 IGLV10-54A0A075B6I4 117 aa3.85□□□□□ -1.79
VPS41-214ENST00000490924 IGLV5-48A0A075B6I7 105 aa3.85□□□□□ -1.79
VPS41-214ENST00000490924 C9orf116Q5BN46 136 aaPredicted RBP3.85□□□□□ -1.79
VPS41-214ENST00000490924 CLPSL2Q6UWE3 100 aa3.85□□□□□ -1.79
VPS41-214ENST00000490924 FAM19A1Q7Z5A9 133 aa3.85□□□□□ -1.79
VPS41-214ENST00000490924 DHRS4-AS1Q9P1J3 65 aa3.85□□□□□ -1.79
VPS41-214ENST00000490924 MEGF8Q7Z7M0 2845 aa3.85□□□□□ -1.79
VPS41-214ENST00000490924 CAMK2N2Q96S95 79 aa3.84□□□□□ -1.79
VPS41-214ENST00000490924 KLK12Q9UKR0 248 aa3.84□□□□□ -1.79
VPS41-214ENST00000490924 PRYO14603 147 aa3.83□□□□□ -1.8
VPS41-214ENST00000490924 C20orf197Q8N268 126 aa3.83□□□□□ -1.8
VPS41-214ENST00000490924 C3orf56Q8N813 242 aa3.83□□□□□ -1.8
VPS41-214ENST00000490924 CYSTM1Q9H1C7 97 aa3.83□□□□□ -1.8
VPS41-214ENST00000490924 NSD1Q96L73 2696 aaPredicted RBP3.83□□□□□ -1.8
VPS41-214ENST00000490924 FN1P02751 2386 aaKnown RBP3.82□□□□□ -1.8
VPS41-214ENST00000490924 DNAH10OSP0CZ25 163 aa3.82□□□□□ -1.8
VPS41-214ENST00000490924 SPRR1AP35321 89 aa3.82□□□□□ -1.8
VPS41-214ENST00000490924 HAMPP81172 84 aa3.82□□□□□ -1.8
VPS41-214ENST00000490924 C15orf56Q8N910 161 aa3.82□□□□□ -1.8
VPS41-214ENST00000490924 MRAPQ8TCY5 172 aa3.82□□□□□ -1.8
VPS41-214ENST00000490924 C1orf43Q9BWL3 253 aa3.82□□□□□ -1.8
VPS41-214ENST00000490924 KRTAP2-2Q9BYT5 123 aa3.82□□□□□ -1.8
VPS41-214ENST00000490924 SMIM26A0A096LP01 95 aa3.81□□□□□ -1.8
VPS41-214ENST00000490924 LCE6AA0A183 80 aa3.81□□□□□ -1.8
VPS41-214ENST00000490924 HIGD2BQ4VC39 106 aa3.81□□□□□ -1.8
VPS41-214ENST00000490924 KPRPQ5T749 579 aaPredicted RBP3.81□□□□□ -1.8
VPS41-214ENST00000490924 KRTAP5-11Q6L8G4 156 aa3.81□□□□□ -1.8
VPS41-214ENST00000490924 ACANP16112 2415 aa3.81□□□□□ -1.8
VPS41-214ENST00000490924 RPL37AP8A6NKH3 93 aa3.8□□□□□ -1.8
VPS41-214ENST00000490924 KRTAP4-16G5E9R7 235 aaPredicted RBP3.8□□□□□ -1.8
VPS41-214ENST00000490924 BPY2O14599 106 aa3.8□□□□□ -1.8
VPS41-214ENST00000490924 FUSP35637 526 aaKnown RBP eCLIP3.8□□□□□ -1.8
VPS41-214ENST00000490924 SYCNQ0VAF6 134 aa3.8□□□□□ -1.8
VPS41-214ENST00000490924 NREPQ16612 68 aa3.8□□□□□ -1.8
VPS41-214ENST00000490924 Q5XG85 94 aa3.8□□□□□ -1.8
VPS41-214ENST00000490924 Q6ZRU5 148 aa3.8□□□□□ -1.8
VPS41-214ENST00000490924 TMEM254Q8TBM7 123 aa3.8□□□□□ -1.8
VPS41-214ENST00000490924 RMI2Q96E14 147 aa3.8□□□□□ -1.8
VPS41-214ENST00000490924 SPRR4Q96PI1 79 aa3.8□□□□□ -1.8
VPS41-214ENST00000490924 OCR1Q9BZK8 76 aa3.8□□□□□ -1.8
VPS41-214ENST00000490924 INAFM1C9JVW0 142 aa3.79□□□□□ -1.8
VPS41-214ENST00000490924 IGKV4-1P06312 121 aa3.79□□□□□ -1.8
VPS41-214ENST00000490924 Q6ZRX8 168 aa3.79□□□□□ -1.8
VPS41-214ENST00000490924 NKAPP1Q8N9T2 125 aa3.79□□□□□ -1.8
VPS41-214ENST00000490924 XAGE1AQ9HD64 81 aa3.79□□□□□ -1.8
VPS41-214ENST00000490924 TRAV10A0A0B4J240 114 aa3.78□□□□□ -1.8
VPS41-214ENST00000490924 A0A0U1RQV1 116 aa3.78□□□□□ -1.8
VPS41-214ENST00000490924 M0R2N4 97 aa3.78□□□□□ -1.8
VPS41-214ENST00000490924 OXTP01178 125 aa3.78□□□□□ -1.8
VPS41-214ENST00000490924 LCE1EQ5T753 118 aa3.78□□□□□ -1.8
VPS41-214ENST00000490924 Q6ZRP5 223 aa3.78□□□□□ -1.8
VPS41-214ENST00000490924 WFDC10BQ8IUB3 73 aa3.78□□□□□ -1.8
VPS41-214ENST00000490924 Q8NBF4 154 aa3.78□□□□□ -1.8
VPS41-214ENST00000490924 IGLV8-61A0A075B6I0 122 aa3.77□□□□□ -1.81
VPS41-214ENST00000490924 IGLV1-50A0A075B6I6 118 aa3.77□□□□□ -1.81
VPS41-214ENST00000490924 DEFB4AO15263 64 aa3.77□□□□□ -1.81
VPS41-214ENST00000490924 Q8N377 158 aa3.77□□□□□ -1.81
VPS41-214ENST00000490924 PKIGQ9Y2B9 76 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms