RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 LST1O00453 97 aa13.65□□□□□ -0.22
SMC4-221ENST00000489573 PRYO14603 147 aa13.65□□□□□ -0.22
SMC4-221ENST00000489573 EPM2AB3EWF7 344 aa13.64□□□□□ -0.23
SMC4-221ENST00000489573 A0A087WYN8 130 aa13.63□□□□□ -0.23
SMC4-221ENST00000489573 PHF5AQ7RTV0 110 aaKnown RBP13.63□□□□□ -0.23
SMC4-221ENST00000489573 FAM218AQ96MZ4 157 aa13.63□□□□□ -0.23
SMC4-221ENST00000489573 FAT2Q9NYQ8 4349 aa13.63□□□□□ -0.23
SMC4-221ENST00000489573 DNAH11Q96DT5 4516 aa13.61□□□□□ -0.23
SMC4-221ENST00000489573 TRBV7-6A0A0J9YX20 115 aa13.61□□□□□ -0.23
SMC4-221ENST00000489573 PLAC8Q9NZF1 115 aa13.6□□□□□ -0.23
SMC4-221ENST00000489573 COX7BP24311 80 aa13.59□□□□□ -0.23
SMC4-221ENST00000489573 UBE2BP63146 152 aa13.59□□□□□ -0.23
SMC4-221ENST00000489573 TRACP01848 142 aa13.58□□□□□ -0.23
SMC4-221ENST00000489573 SPRR1AP35321 89 aa13.58□□□□□ -0.23
SMC4-221ENST00000489573 KRTAP10-1P60331 282 aa13.58□□□□□ -0.23
SMC4-221ENST00000489573 HECTD4Q9Y4D8 3996 aa13.58□□□□□ -0.24
SMC4-221ENST00000489573 ELOF1P60002 83 aaKnown RBP13.58□□□□□ -0.24
SMC4-221ENST00000489573 A0A1B0GVY2 172 aa13.57□□□□□ -0.24
SMC4-221ENST00000489573 REG3GQ6UW15 175 aa13.57□□□□□ -0.24
SMC4-221ENST00000489573 A0A1B0GX51 115 aa13.55□□□□□ -0.24
SMC4-221ENST00000489573 LINC00575Q6W349 94 aa13.55□□□□□ -0.24
SMC4-221ENST00000489573 C9JAW5 83 aa13.54□□□□□ -0.24
SMC4-221ENST00000489573 Q6ZSA8 131 aa13.54□□□□□ -0.24
SMC4-221ENST00000489573 MTURNQ8N3F0 131 aa13.54□□□□□ -0.24
SMC4-221ENST00000489573 FAM30AQ9NZY2 134 aa13.54□□□□□ -0.24
SMC4-221ENST00000489573 ETDCA0A1B0GVM5 59 aa13.54□□□□□ -0.24
SMC4-221ENST00000489573 KRTAP4-16G5E9R7 235 aaPredicted RBP13.54□□□□□ -0.24
SMC4-221ENST00000489573 PRO0461Q9UI25 63 aa13.54□□□□□ -0.24
SMC4-221ENST00000489573 KRTAP11-1Q8IUC1 163 aa13.53□□□□□ -0.24
SMC4-221ENST00000489573 LINC00528Q8N1L1 170 aa13.53□□□□□ -0.24
SMC4-221ENST00000489573 SNCGO76070 127 aa13.52□□□□□ -0.25
SMC4-221ENST00000489573 DNAL4O96015 105 aa13.52□□□□□ -0.25
SMC4-221ENST00000489573 F8W1H4 67 aa13.51□□□□□ -0.25
SMC4-221ENST00000489573 DNAH5Q8TE73 4624 aa13.51□□□□□ -0.25
SMC4-221ENST00000489573 hADV29S1A0JD25 119 aa13.5□□□□□ -0.25
SMC4-221ENST00000489573 B5MCH6 92 aa13.5□□□□□ -0.25
SMC4-221ENST00000489573 SLC25A20O43772 301 aa13.5□□□□□ -0.25
SMC4-221ENST00000489573 Q6ZRX8 168 aa13.49□□□□□ -0.25
SMC4-221ENST00000489573 PKD1P98161 4303 aa13.49□□□□□ -0.25
SMC4-221ENST00000489573 CIRBP-AS1Q8TBR5 109 aa13.48□□□□□ -0.25
SMC4-221ENST00000489573 SMCPP49901 116 aaPredicted RBP13.47□□□□□ -0.25
SMC4-221ENST00000489573 SCXQ7RTU7 201 aa13.47□□□□□ -0.25
SMC4-221ENST00000489573 INAFM2P0DMQ5 153 aa13.46□□□□□ -0.25
SMC4-221ENST00000489573 FAM19A1Q7Z5A9 133 aa13.45□□□□□ -0.26
SMC4-221ENST00000489573 H3BT86 120 aa13.45□□□□□ -0.26
SMC4-221ENST00000489573 ANKRD29Q8N6D5 301 aa13.45□□□□□ -0.26
SMC4-221ENST00000489573 DHRS4-AS1Q9P1J3 65 aa13.45□□□□□ -0.26
SMC4-221ENST00000489573 BCE1O60756 84 aa13.42□□□□□ -0.26
SMC4-221ENST00000489573 Q9BRP9 147 aa13.42□□□□□ -0.26
SMC4-221ENST00000489573 ORMDL1Q9P0S3 153 aa13.42□□□□□ -0.26
SMC4-221ENST00000489573 BAALC-AS2P0C853 105 aa13.41□□□□□ -0.26
SMC4-221ENST00000489573 PRLHP81277 87 aa13.41□□□□□ -0.26
SMC4-221ENST00000489573 LINC01600Q96MT4 127 aa13.41□□□□□ -0.26
SMC4-221ENST00000489573 DNAH8Q96JB1 4490 aa13.41□□□□□ -0.26
SMC4-221ENST00000489573 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.41□□□□□ -0.26
SMC4-221ENST00000489573 Q6ZQY7 126 aa13.41□□□□□ -0.26
SMC4-221ENST00000489573 HAMPP81172 84 aa13.39□□□□□ -0.27
SMC4-221ENST00000489573 PSORS1C2Q9UIG4 136 aa13.39□□□□□ -0.27
SMC4-221ENST00000489573 H0Y9J4 135 aa13.38□□□□□ -0.27
SMC4-221ENST00000489573 UBE2AP49459 152 aa13.38□□□□□ -0.27
SMC4-221ENST00000489573 SMCR5Q8TEV8 140 aa13.37□□□□□ -0.27
SMC4-221ENST00000489573 LCE2DQ5TA82 110 aaPredicted RBP13.37□□□□□ -0.27
SMC4-221ENST00000489573 OCIAD2Q56VL3 154 aa13.36□□□□□ -0.27
SMC4-221ENST00000489573 ETDBQ3ZM63 59 aa13.35□□□□□ -0.27
SMC4-221ENST00000489573 HIGD2AQ9BW72 106 aa13.34□□□□□ -0.27
SMC4-221ENST00000489573 H3BQ85 93 aa13.33□□□□□ -0.28
SMC4-221ENST00000489573 TMEM256-PLSCR3K7ERE1 68 aa13.33□□□□□ -0.28
SMC4-221ENST00000489573 ERC2-IT1O76042 136 aa13.33□□□□□ -0.28
SMC4-221ENST00000489573 C1orf137Q5JT78 98 aa13.33□□□□□ -0.28
SMC4-221ENST00000489573 KRTAP13-1Q8IUC0 172 aa13.33□□□□□ -0.28
SMC4-221ENST00000489573 GHRHP01286 108 aa13.32□□□□□ -0.28
SMC4-221ENST00000489573 TEN1Q86WV5 123 aa13.32□□□□□ -0.28
SMC4-221ENST00000489573 ST20-AS1Q8NBB2 130 aa13.28□□□□□ -0.28
SMC4-221ENST00000489573 LINC01547P58512 204 aaPredicted RBP13.26□□□□□ -0.29
SMC4-221ENST00000489573 DEFB105AQ8NG35 78 aa13.26□□□□□ -0.29
SMC4-221ENST00000489573 LRP1BQ9NZR2 4599 aa13.26□□□□□ -0.29
SMC4-221ENST00000489573 IGLV5-48A0A075B6I7 105 aa13.25□□□□□ -0.29
SMC4-221ENST00000489573 XGP55808 180 aa13.25□□□□□ -0.29
SMC4-221ENST00000489573 PPDPFLQ8WWR9 84 aa13.25□□□□□ -0.29
SMC4-221ENST00000489573 PKHD1P08F94 4074 aa13.25□□□□□ -0.29
SMC4-221ENST00000489573 ZNF861PO60384 105 aa13.24□□□□□ -0.29
SMC4-221ENST00000489573 IGLV7-43P04211 117 aa13.24□□□□□ -0.29
SMC4-221ENST00000489573 DYNC1H1Q14204 4646 aaKnown RBP13.24□□□□□ -0.29
SMC4-221ENST00000489573 Q8N377 158 aa13.24□□□□□ -0.29
SMC4-221ENST00000489573 TEX49A0A1B0GTD5 131 aa13.23□□□□□ -0.29
SMC4-221ENST00000489573 LAMTOR3Q9UHA4 124 aa13.21□□□□□ -0.29
SMC4-221ENST00000489573 HERC2O95714 4834 aa13.2□□□□□ -0.3
SMC4-221ENST00000489573 OBSCN-AS1Q96MR7 158 aa13.2□□□□□ -0.3
SMC4-221ENST00000489573 JMJD7-PLA2G4BH0Y9G9 81 aa13.19□□□□□ -0.3
SMC4-221ENST00000489573 NDUFV3P56181 108 aaKnown RBP13.19□□□□□ -0.3
SMC4-221ENST00000489573 A0A1B0GV72 72 aa13.17□□□□□ -0.3
SMC4-221ENST00000489573 KIAA1109Q2LD37 5005 aa13.14□□□□□ -0.31
SMC4-221ENST00000489573 SPRR1BP22528 89 aa13.14□□□□□ -0.31
SMC4-221ENST00000489573 GAGE2AQ6NT46 116 aa13.14□□□□□ -0.31
SMC4-221ENST00000489573 ZNF706Q9Y5V0 76 aaPredicted RBP13.14□□□□□ -0.31
SMC4-221ENST00000489573 RPL37AP61513 92 aaKnown RBP13.13□□□□□ -0.31
SMC4-221ENST00000489573 C3orf22Q8N5N4 141 aa13.13□□□□□ -0.31
SMC4-221ENST00000489573 C14orf132Q9NPU4 83 aa13.13□□□□□ -0.31
SMC4-221ENST00000489573 RBM3P98179 157 aaKnown RBP13.12□□□□□ -0.31
SMC4-221ENST00000489573 SPRR4Q96PI1 79 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms