RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 WDFY3Q8IZQ1 3526 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 NOTCH1P46531 2555 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 IGHV1-18A0A0C4DH31 117 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 NBDYA0A0U1RRE5 68 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 NUPR2A6NF83 97 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 LOC730098B7Z3J9 87 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 H7C2G1 150 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 NDUFA3O95167 84 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 IGLV3-1P01715 115 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 COX6CP09669 75 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 PLNP26678 52 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 CRIP1P50238 77 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 CCL18P55774 89 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 SMIM11AP58511 58 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 ARHGAP5-AS1Q96IT6 56 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 CNFNQ9BYD5 112 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 TMEM14CQ9P0S9 112 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 TIMM8BQ9Y5J9 83 aaPredicted RBP0.49□□□□□ -2.33
SMC4-220ENST00000488017 LENEPQ9Y5L5 61 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 BOD1L1Q8NFC6 3051 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 PKHD1L1Q86WI1 4243 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 NBEAQ8NFP9 2946 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 BRWD1Q9NSI6 2320 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 TENM2Q9NT68 2774 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 VPS13AQ96RL7 3174 aa0.49□□□□□ -2.33
SMC4-220ENST00000488017 CUL9Q8IWT3 2517 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 AHCTF1Q8WYP5 2266 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 ANKRD17O75179 2603 aaKnown RBP0.48□□□□□ -2.33
SMC4-220ENST00000488017 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.48□□□□□ -2.33
SMC4-220ENST00000488017 IGKV2-40A0A087WW87 121 aaPredicted RBP0.48□□□□□ -2.33
SMC4-220ENST00000488017 LOC110117498A0A087WWA1 95 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 A0A096LNT2 108 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 TRBV10-1A0A0K0K1A3 114 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 TRBV6-1A0A0K0K1D8 114 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 A0A1B0GUT8 65 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 CPSF4LA6NMK7 179 aaKnown RBP0.48□□□□□ -2.33
SMC4-220ENST00000488017 H3BSH0 61 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 NCR3O14931 201 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 DNAL4O96015 105 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 IGKV2D-40P01614 121 aaPredicted RBP0.48□□□□□ -2.33
SMC4-220ENST00000488017 IAPPP10997 89 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 CCL3L1P16619 93 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 PDE6GP18545 87 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 PRB3Q04118 309 aaPredicted RBP0.48□□□□□ -2.33
SMC4-220ENST00000488017 SPAG11BQ08648 103 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 SPAG11AQ6PDA7 123 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 UNQ6190/PRO20217Q6UXQ8 127 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 DEFB132Q7Z7B7 95 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 Q86TA4 180 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 COX7B2Q8TF08 81 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 LINC00208Q96KT6 92 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 Q96NJ1 140 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 ASH1LQ9NR48 2969 aaKnown RBP0.48□□□□□ -2.33
SMC4-220ENST00000488017 ORMDL1Q9P0S3 153 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 KLK9Q9UKQ9 250 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 CELSR3Q9NYQ7 3312 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 PDE4DIPQ5VU43 2346 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 PRKDCP78527 4128 aaKnown RBP0.48□□□□□ -2.33
SMC4-220ENST00000488017 LAMA3Q16787 3333 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 VPS13BQ7Z7G8 4022 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 CELSR2Q9HCU4 2923 aa0.48□□□□□ -2.33
SMC4-220ENST00000488017 CUBNO60494 3623 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 LOC400499M0QZD8 3231 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 CSMD1Q96PZ7 3565 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 DNAH14Q0VDD8 3507 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 ASPMQ8IZT6 3477 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 PRUNE2Q8WUY3 3088 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 NAV3Q8IVL0 2385 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 MUC3AQ02505 3323 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 KMT2AQ03164 3969 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 TRBV6-4A0A1B0GX49 114 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 H0Y9P7 68 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 I3L2K1 104 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 NDUFA4O00483 81 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 CCL22O00626 93 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 PPP1R17O96001 155 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 PDE6HQ13956 83 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 DEFB114Q30KQ6 69 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 SPANXN5Q5MJ07 72 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 C10orf113Q5VZT2 155 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 PATE1Q8WXA2 126 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 PRO3102Q9H379 93 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 KCNQ1DNQ9H478 68 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 TMEM167BQ9NRX6 74 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 MRPL36Q9P0J6 103 aaKnown RBP0.47□□□□□ -2.33
SMC4-220ENST00000488017 DNAH7Q8WXX0 4024 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 CNOT1A5YKK6 2376 aaKnown RBP0.47□□□□□ -2.33
SMC4-220ENST00000488017 MYO15AQ9UKN7 3530 aa0.47□□□□□ -2.33
SMC4-220ENST00000488017 IGF2RP11717 2491 aa0.46□□□□□ -2.34
SMC4-220ENST00000488017 DNAH1Q9P2D7 4330 aa0.46□□□□□ -2.34
SMC4-220ENST00000488017 CSMD2Q7Z408 3487 aa0.46□□□□□ -2.34
SMC4-220ENST00000488017 HTTP42858 3142 aa0.46□□□□□ -2.34
SMC4-220ENST00000488017 PIGBOS1A0A0B4J2F0 54 aa0.46□□□□□ -2.34
SMC4-220ENST00000488017 RNASE3P12724 160 aaKnown RBP0.46□□□□□ -2.34
SMC4-220ENST00000488017 RPS27P42677 84 aaKnown RBP0.46□□□□□ -2.34
SMC4-220ENST00000488017 FXYD4P59646 89 aa0.46□□□□□ -2.34
SMC4-220ENST00000488017 DEFB112Q30KQ8 113 aa0.46□□□□□ -2.34
SMC4-220ENST00000488017 SMIM11BQ8TCY0 68 aa0.46□□□□□ -2.34
SMC4-220ENST00000488017 LINC00308Q8TCZ7 52 aa0.46□□□□□ -2.34
SMC4-220ENST00000488017 DMAC1Q96GE9 116 aa0.46□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms