RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 SVIPQ8NHG7 77 aa11.69□□□□□ -0.54
VIM-206ENST00000487938 DNAH3Q8TD57 4116 aa11.68□□□□□ -0.54
VIM-206ENST00000487938 RPL37AP8A6NKH3 93 aa11.68□□□□□ -0.54
VIM-206ENST00000487938 CXCL6P80162 114 aa11.68□□□□□ -0.54
VIM-206ENST00000487938 KCNQ1DNQ9H478 68 aa11.68□□□□□ -0.54
VIM-206ENST00000487938 LINC00588Q9Y4M8 146 aa11.68□□□□□ -0.54
VIM-206ENST00000487938 FAM168BA1KXE4 195 aa11.67□□□□□ -0.54
VIM-206ENST00000487938 TMEM258P61165 79 aa11.67□□□□□ -0.54
VIM-206ENST00000487938 C20orf197Q8N268 126 aa11.67□□□□□ -0.54
VIM-206ENST00000487938 MAST4O15021 2626 aa11.66□□□□□ -0.54
VIM-206ENST00000487938 J3KT08 172 aa11.65□□□□□ -0.54
VIM-206ENST00000487938 NOTCH1P46531 2555 aa11.65□□□□□ -0.54
VIM-206ENST00000487938 Q8N377 158 aa11.63□□□□□ -0.55
VIM-206ENST00000487938 MRAPQ8TCY5 172 aa11.63□□□□□ -0.55
VIM-206ENST00000487938 DPH3Q96FX2 82 aa11.63□□□□□ -0.55
VIM-206ENST00000487938 TRAV7A0A075B6U4 112 aa11.62□□□□□ -0.55
VIM-206ENST00000487938 TLX1NBP0CAT3 122 aa11.61□□□□□ -0.55
VIM-206ENST00000487938 DNAH1Q9P2D7 4330 aa11.61□□□□□ -0.55
VIM-206ENST00000487938 C3orf84H3BNL1 204 aa11.6□□□□□ -0.55
VIM-206ENST00000487938 Q8N9L7 120 aa11.6□□□□□ -0.55
VIM-206ENST00000487938 RPS28P62857 69 aaKnown RBP11.59□□□□□ -0.55
VIM-206ENST00000487938 KRTAP7-1Q8IUC3 87 aa11.59□□□□□ -0.55
VIM-206ENST00000487938 Q9BRP9 147 aa11.59□□□□□ -0.55
VIM-206ENST00000487938 BCE1O60756 84 aa11.58□□□□□ -0.55
VIM-206ENST00000487938 IGLV1-50A0A075B6I6 118 aa11.58□□□□□ -0.56
VIM-206ENST00000487938 NREPQ16612 68 aa11.57□□□□□ -0.56
VIM-206ENST00000487938 FAM19A5Q7Z5A7 132 aaPredicted RBP11.57□□□□□ -0.56
VIM-206ENST00000487938 PLA2G2DQ9UNK4 145 aa11.57□□□□□ -0.56
VIM-206ENST00000487938 Q6ZRX8 168 aa11.57□□□□□ -0.56
VIM-206ENST00000487938 ST20-AS1Q8NBB2 130 aa11.56□□□□□ -0.56
VIM-206ENST00000487938 HUWE1Q7Z6Z7 4374 aaKnown RBP11.56□□□□□ -0.56
VIM-206ENST00000487938 ETDCA0A1B0GVM5 59 aa11.56□□□□□ -0.56
VIM-206ENST00000487938 KRTAP4-16G5E9R7 235 aaPredicted RBP11.56□□□□□ -0.56
VIM-206ENST00000487938 TM2D3Q9BRN9 247 aa11.56□□□□□ -0.56
VIM-206ENST00000487938 SNURFQ9Y675 71 aa11.56□□□□□ -0.56
VIM-206ENST00000487938 DHRS4-AS1Q9P1J3 65 aa11.55□□□□□ -0.56
VIM-206ENST00000487938 OXTP01178 125 aa11.55□□□□□ -0.56
VIM-206ENST00000487938 PRYO14603 147 aa11.53□□□□□ -0.56
VIM-206ENST00000487938 COL6A5A8TX70 2615 aa11.53□□□□□ -0.56
VIM-206ENST00000487938 IGLV5-48A0A075B6I7 105 aa11.53□□□□□ -0.56
VIM-206ENST00000487938 IGLV5-37A0A075B6J1 123 aa11.52□□□□□ -0.56
VIM-206ENST00000487938 BPY2O14599 106 aa11.52□□□□□ -0.56
VIM-206ENST00000487938 SPRR1AP35321 89 aa11.52□□□□□ -0.57
VIM-206ENST00000487938 RMI2Q96E14 147 aa11.52□□□□□ -0.57
VIM-206ENST00000487938 BAHCC1Q9P281 2608 aa11.51□□□□□ -0.57
VIM-206ENST00000487938 ERC2-IT1O76042 136 aa11.51□□□□□ -0.57
VIM-206ENST00000487938 MRPL55Q7Z7F7 128 aaKnown RBP11.51□□□□□ -0.57
VIM-206ENST00000487938 H7BZZ5 65 aa11.51□□□□□ -0.57
VIM-206ENST00000487938 K7EIL1 84 aa11.51□□□□□ -0.57
VIM-206ENST00000487938 IGKV4-1P06312 121 aa11.51□□□□□ -0.57
VIM-206ENST00000487938 NBEAL1Q6ZS30 2694 aa11.49□□□□□ -0.57
VIM-206ENST00000487938 A0A1W2PNM2 257 aa11.48□□□□□ -0.57
VIM-206ENST00000487938 UBE2BP63146 152 aa11.48□□□□□ -0.57
VIM-206ENST00000487938 KLKP1Q107X0 134 aa11.48□□□□□ -0.57
VIM-206ENST00000487938 C1orf137Q5JT78 98 aa11.47□□□□□ -0.57
VIM-206ENST00000487938 LYSTQ99698 3801 aa11.47□□□□□ -0.57
VIM-206ENST00000487938 FUSP35637 526 aaKnown RBP eCLIP11.47□□□□□ -0.57
VIM-206ENST00000487938 DNAH10Q8IVF4 4471 aa11.47□□□□□ -0.57
VIM-206ENST00000487938 FAM236DA0A1B0GTK5 79 aa11.46□□□□□ -0.57
VIM-206ENST00000487938 FAM236CP0DP71 79 aa11.46□□□□□ -0.57
VIM-206ENST00000487938 TNP2Q05952 138 aa11.45□□□□□ -0.58
VIM-206ENST00000487938 F8WEM9 126 aa11.43□□□□□ -0.58
VIM-206ENST00000487938 REG3GQ6UW15 175 aa11.43□□□□□ -0.58
VIM-206ENST00000487938 KRTAP1-5Q9BYS1 174 aa11.42□□□□□ -0.58
VIM-206ENST00000487938 IGKV2-24A0A0C4DH68 120 aa11.42□□□□□ -0.58
VIM-206ENST00000487938 Q8NBF4 154 aa11.4□□□□□ -0.58
VIM-206ENST00000487938 A0A096LNI7 61 aa11.39□□□□□ -0.59
VIM-206ENST00000487938 A0A0G2JQZ4 141 aa11.39□□□□□ -0.59
VIM-206ENST00000487938 A0A1W2PNN7 141 aa11.39□□□□□ -0.59
VIM-206ENST00000487938 DNAH9Q9NYC9 4486 aa11.38□□□□□ -0.59
VIM-206ENST00000487938 TMEM254Q8TBM7 123 aa11.38□□□□□ -0.59
VIM-206ENST00000487938 SMIM29Q86T20 159 aa11.37□□□□□ -0.59
VIM-206ENST00000487938 OCR1Q9BZK8 76 aa11.37□□□□□ -0.59
VIM-206ENST00000487938 PRLHP81277 87 aa11.37□□□□□ -0.59
VIM-206ENST00000487938 PSCAO43653 123 aa11.36□□□□□ -0.59
VIM-206ENST00000487938 SPRR4Q96PI1 79 aa11.35□□□□□ -0.59
VIM-206ENST00000487938 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.35□□□□□ -0.59
VIM-206ENST00000487938 A0A1B0GW54 56 aa11.35□□□□□ -0.59
VIM-206ENST00000487938 C4orf26Q17RF5 130 aa11.34□□□□□ -0.59
VIM-206ENST00000487938 MGAM2Q2M2H8 2515 aa11.34□□□□□ -0.59
VIM-206ENST00000487938 LINC00476Q8WZB0 136 aa11.34□□□□□ -0.59
VIM-206ENST00000487938 C16orf90A8MZG2 172 aa11.33□□□□□ -0.6
VIM-206ENST00000487938 Q5XG85 94 aa11.33□□□□□ -0.6
VIM-206ENST00000487938 COL7A1Q02388 2944 aa11.33□□□□□ -0.6
VIM-206ENST00000487938 FAM30AQ9NZY2 134 aa11.33□□□□□ -0.6
VIM-206ENST00000487938 SERP1Q9Y6X1 66 aa11.33□□□□□ -0.6
VIM-206ENST00000487938 NDUFC1O43677 76 aa11.32□□□□□ -0.6
VIM-206ENST00000487938 UBE2DNLQ8IWF7 75 aa11.32□□□□□ -0.6
VIM-206ENST00000487938 DSCR10P59022 87 aa11.31□□□□□ -0.6
VIM-206ENST00000487938 HIGD2AQ9BW72 106 aa11.31□□□□□ -0.6
VIM-206ENST00000487938 EPM2AB3EWF7 344 aa11.3□□□□□ -0.6
VIM-206ENST00000487938 CNBPP62633 177 aaKnown RBP11.3□□□□□ -0.6
VIM-206ENST00000487938 CHTF8P0CG12 524 aa11.29□□□□□ -0.6
VIM-206ENST00000487938 K7EQZ3 153 aa11.29□□□□□ -0.6
VIM-206ENST00000487938 IGFL1Q6UW32 110 aa11.29□□□□□ -0.6
VIM-206ENST00000487938 CSMD3Q7Z407 3707 aa11.28□□□□□ -0.6
VIM-206ENST00000487938 A0A0U1RQV1 116 aa11.28□□□□□ -0.6
VIM-206ENST00000487938 DEFB116Q30KQ4 102 aa11.28□□□□□ -0.6
VIM-206ENST00000487938 KRTAP11-1Q8IUC1 163 aa11.28□□□□□ -0.6
VIM-206ENST00000487938 STAB2Q8WWQ8 2551 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms