RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 MT1HL1P0DM35 61 aa-0.67□□□□□ -2.52
VPS50-216ENST00000484954 MRPL34Q9BQ48 92 aaKnown RBP-0.67□□□□□ -2.52
VPS50-216ENST00000484954 S4R3F8 94 aa-0.67□□□□□ -2.52
VPS50-216ENST00000484954 DOCK2Q92608 1830 aa-0.67□□□□□ -2.52
VPS50-216ENST00000484954 NCOA3Q9Y6Q9 1424 aa-0.67□□□□□ -2.52
VPS50-216ENST00000484954 C1orf167Q5SNV9 1468 aa-0.67□□□□□ -2.52
VPS50-216ENST00000484954 MAP3K1Q13233 1512 aa-0.68□□□□□ -2.52
VPS50-216ENST00000484954 I3L3M4 83 aa-0.68□□□□□ -2.52
VPS50-216ENST00000484954 K7EP34 96 aa-0.68□□□□□ -2.52
VPS50-216ENST00000484954 MT1EP04732 61 aa-0.68□□□□□ -2.52
VPS50-216ENST00000484954 ATP5EP56381 51 aaPredicted RBP-0.68□□□□□ -2.52
VPS50-216ENST00000484954 HEPN1Q6WQI6 88 aa-0.68□□□□□ -2.52
VPS50-216ENST00000484954 PRO1933Q9H354 126 aa-0.68□□□□□ -2.52
VPS50-216ENST00000484954 HIGD1BQ9P298 99 aa-0.68□□□□□ -2.52
VPS50-216ENST00000484954 CDKN2A-AS1Q9UH64 79 aa-0.68□□□□□ -2.52
VPS50-216ENST00000484954 PRO1854Q9UHT4 67 aa-0.68□□□□□ -2.52
VPS50-216ENST00000484954 ANKRD50Q9ULJ7 1429 aa-0.68□□□□□ -2.52
VPS50-216ENST00000484954 SHROOM2Q13796 1616 aa-0.68□□□□□ -2.52
VPS50-216ENST00000484954 PLEKHH2Q8IVE3 1493 aa-0.68□□□□□ -2.52
VPS50-216ENST00000484954 EHBP1L1Q8N3D4 1523 aa-0.69□□□□□ -2.52
VPS50-216ENST00000484954 A0A1B0GU69 56 aa-0.69□□□□□ -2.52
VPS50-216ENST00000484954 COX6CP09669 75 aa-0.69□□□□□ -2.52
VPS50-216ENST00000484954 TRAPPC2P0DI81 140 aa-0.69□□□□□ -2.52
VPS50-216ENST00000484954 TRAPPC2BP0DI82 140 aa-0.69□□□□□ -2.52
VPS50-216ENST00000484954 SAA2P0DJI9 122 aaPredicted RBP-0.69□□□□□ -2.52
VPS50-216ENST00000484954 SEC11AP67812 179 aa-0.69□□□□□ -2.52
VPS50-216ENST00000484954 DEFB110Q30KQ9 67 aa-0.69□□□□□ -2.52
VPS50-216ENST00000484954 A0A0G2JMZ2 1700 aa-0.69□□□□□ -2.52
VPS50-216ENST00000484954 MYH7P12883 1935 aa-0.7□□□□□ -2.52
VPS50-216ENST00000484954 TRAV30A0A087WSZ9 112 aa-0.7□□□□□ -2.52
VPS50-216ENST00000484954 EFCAB10A6NFE3 127 aa-0.7□□□□□ -2.52
VPS50-216ENST00000484954 NAP1L6A6NFF2 107 aa-0.7□□□□□ -2.52
VPS50-216ENST00000484954 H3BQ15 152 aa-0.7□□□□□ -2.52
VPS50-216ENST00000484954 CCL22O00626 93 aa-0.7□□□□□ -2.52
VPS50-216ENST00000484954 MT1GP13640 62 aa-0.7□□□□□ -2.52
VPS50-216ENST00000484954 GNG4P50150 75 aa-0.7□□□□□ -2.52
VPS50-216ENST00000484954 PPP3R1P63098 170 aa-0.7□□□□□ -2.52
VPS50-216ENST00000484954 MT1LQ93083 61 aa-0.7□□□□□ -2.52
VPS50-216ENST00000484954 XRN1Q8IZH2 1706 aaKnown RBP-0.7□□□□□ -2.52
VPS50-216ENST00000484954 CLIP1P30622 1438 aa-0.71□□□□□ -2.52
VPS50-216ENST00000484954 MYOM2P54296 1465 aa-0.71□□□□□ -2.52
VPS50-216ENST00000484954 CCDC141Q6ZP82 1450 aa-0.71□□□□□ -2.52
VPS50-216ENST00000484954 NLRP1Q9C000 1473 aa-0.71□□□□□ -2.52
VPS50-216ENST00000484954 hADV29S1A0JD25 119 aa-0.71□□□□□ -2.52
VPS50-216ENST00000484954 NDUFA3O95167 84 aa-0.71□□□□□ -2.52
VPS50-216ENST00000484954 SNCAP37840 140 aa-0.71□□□□□ -2.52
VPS50-216ENST00000484954 HSD52Q0P140 79 aa-0.71□□□□□ -2.52
VPS50-216ENST00000484954 C6orf201Q7Z4U5 140 aa-0.71□□□□□ -2.52
VPS50-216ENST00000484954 SVBPQ8N300 66 aa-0.71□□□□□ -2.52
VPS50-216ENST00000484954 ANKRD36A6QL64 1941 aa-0.72□□□□□ -2.52
VPS50-216ENST00000484954 EDC4Q6P2E9 1401 aaKnown RBP-0.72□□□□□ -2.52
VPS50-216ENST00000484954 MRC2Q9UBG0 1479 aa-0.72□□□□□ -2.52
VPS50-216ENST00000484954 A0A087WVE0 104 aa-0.72□□□□□ -2.52
VPS50-216ENST00000484954 C7orf77A4D0Y5 90 aa-0.72□□□□□ -2.52
VPS50-216ENST00000484954 PRLHP81277 87 aa-0.72□□□□□ -2.52
VPS50-216ENST00000484954 MT1MQ8N339 61 aa-0.72□□□□□ -2.52
VPS50-216ENST00000484954 C12orf57Q99622 126 aa-0.72□□□□□ -2.52
VPS50-216ENST00000484954 C2orf88Q9BSF0 95 aa-0.72□□□□□ -2.52
VPS50-216ENST00000484954 PDCD11Q14690 1871 aaKnown RBP-0.72□□□□□ -2.52
VPS50-216ENST00000484954 SPTY2D1-AS1A0A0U1RR47 76 aa-0.73□□□□□ -2.53
VPS50-216ENST00000484954 LINC00587B1AMM8 73 aa-0.73□□□□□ -2.53
VPS50-216ENST00000484954 H7BZZ5 65 aa-0.73□□□□□ -2.53
VPS50-216ENST00000484954 MT2AP02795 61 aa-0.73□□□□□ -2.53
VPS50-216ENST00000484954 ARMS2P0C7Q2 107 aa-0.73□□□□□ -2.53
VPS50-216ENST00000484954 S100A1P23297 94 aa-0.73□□□□□ -2.53
VPS50-216ENST00000484954 KRTAP8-1Q8IUC2 63 aa-0.73□□□□□ -2.53
VPS50-216ENST00000484954 SCN7AQ01118 1682 aa-0.73□□□□□ -2.53
VPS50-216ENST00000484954 KIAA1551Q9HCM1 1747 aa-0.73□□□□□ -2.53
VPS50-216ENST00000484954 LRRC37AA6NMS7 1700 aa-0.74□□□□□ -2.53
VPS50-216ENST00000484954 KNDC1Q76NI1 1749 aa-0.74□□□□□ -2.53
VPS50-216ENST00000484954 BCORQ6W2J9 1755 aa-0.74□□□□□ -2.53
VPS50-216ENST00000484954 A0A0G2JND7 137 aa-0.74□□□□□ -2.53
VPS50-216ENST00000484954 TRBV7-7A0A0K0K1E9 115 aa-0.74□□□□□ -2.53
VPS50-216ENST00000484954 CRYM-AS1A6NIL9 109 aa-0.74□□□□□ -2.53
VPS50-216ENST00000484954 H0Y9P7 68 aa-0.74□□□□□ -2.53
VPS50-216ENST00000484954 COX6B2Q6YFQ2 88 aa-0.74□□□□□ -2.53
VPS50-216ENST00000484954 DEFB107AQ8IZN7 70 aa-0.74□□□□□ -2.53
VPS50-216ENST00000484954 CGREF1Q99674 301 aa-0.74□□□□□ -2.53
VPS50-216ENST00000484954 TCHHQ07283 1943 aa-0.75□□□□□ -2.53
VPS50-216ENST00000484954 TMEM262E9PQX1 116 aa-0.75□□□□□ -2.53
VPS50-216ENST00000484954 ASIPP42127 132 aa-0.75□□□□□ -2.53
VPS50-216ENST00000484954 NMSQ5H8A3 153 aa-0.75□□□□□ -2.53
VPS50-216ENST00000484954 GNG8Q9UK08 70 aa-0.75□□□□□ -2.53
VPS50-216ENST00000484954 ABCC5O15440 1437 aa-0.75□□□□□ -2.53
VPS50-216ENST00000484954 MAPKBP1O60336 1514 aa-0.75□□□□□ -2.53
VPS50-216ENST00000484954 DIP2CQ9Y2E4 1556 aa-0.75□□□□□ -2.53
VPS50-216ENST00000484954 TARBP1Q13395 1621 aaKnown RBP-0.75□□□□□ -2.53
VPS50-216ENST00000484954 TOPAZ1Q8N9V7 1692 aa-0.75□□□□□ -2.53
VPS50-216ENST00000484954 NUP188Q5SRE5 1749 aa-0.75□□□□□ -2.53
VPS50-216ENST00000484954 SCN11AQ9UI33 1791 aa-0.75□□□□□ -2.53
VPS50-216ENST00000484954 H3BQF6 201 aa-0.76□□□□□ -2.53
VPS50-216ENST00000484954 IGLC2P0DOY2 106 aa-0.76□□□□□ -2.53
VPS50-216ENST00000484954 IGLC3P0DOY3 106 aa-0.76□□□□□ -2.53
VPS50-216ENST00000484954 GNGT1P63211 74 aa-0.76□□□□□ -2.53
VPS50-216ENST00000484954 CLPSL2Q6UWE3 100 aa-0.76□□□□□ -2.53
VPS50-216ENST00000484954 CACFD1Q9UGQ2 172 aa-0.76□□□□□ -2.53
VPS50-216ENST00000484954 PZPP20742 1482 aa-0.76□□□□□ -2.53
VPS50-216ENST00000484954 MAGI2Q86UL8 1455 aa-0.76□□□□□ -2.53
VPS50-216ENST00000484954 CUX1P39880 1505 aa-0.76□□□□□ -2.53
VPS50-216ENST00000484954 SAMD9Q5K651 1589 aa-0.76□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 109.8 ms