RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 PRR4Q16378 134 aa9.15□□□□□ -0.94
CCDC28B-205ENST00000483009 ATOH7Q8N100 152 aa9.15□□□□□ -0.94
CCDC28B-205ENST00000483009 HIST3H2BBQ8N257 126 aa9.15□□□□□ -0.94
CCDC28B-205ENST00000483009 C3orf22Q8N5N4 141 aa9.15□□□□□ -0.94
CCDC28B-205ENST00000483009 Q6ZRX8 168 aa9.14□□□□□ -0.95
CCDC28B-205ENST00000483009 S100A2P29034 98 aa9.13□□□□□ -0.95
CCDC28B-205ENST00000483009 SCGB1D4Q6XE38 83 aa9.13□□□□□ -0.95
CCDC28B-205ENST00000483009 CBY1Q9Y3M2 126 aa9.13□□□□□ -0.95
CCDC28B-205ENST00000483009 ZNF73O43830 326 aaPredicted RBP9.12□□□□□ -0.95
CCDC28B-205ENST00000483009 HIST1H2BLQ99880 126 aa9.12□□□□□ -0.95
CCDC28B-205ENST00000483009 Q9BRP9 147 aa9.12□□□□□ -0.95
CCDC28B-205ENST00000483009 ERC2-IT1O76042 136 aa9.11□□□□□ -0.95
CCDC28B-205ENST00000483009 SPANXDQ9BXN6 97 aa9.11□□□□□ -0.95
CCDC28B-205ENST00000483009 PPDPFQ9H3Y8 114 aa9.11□□□□□ -0.95
CCDC28B-205ENST00000483009 S100A6P06703 90 aa9.1□□□□□ -0.95
CCDC28B-205ENST00000483009 SNRPEP62304 92 aaKnown RBP9.1□□□□□ -0.95
CCDC28B-205ENST00000483009 JOSD1Q15040 202 aaPredicted RBP9.1□□□□□ -0.95
CCDC28B-205ENST00000483009 LINC00483Q53H64 154 aa9.1□□□□□ -0.95
CCDC28B-205ENST00000483009 OR13C6PQ8NH95 151 aa9.1□□□□□ -0.95
CCDC28B-205ENST00000483009 CTAG1AP78358 180 aa9.09□□□□□ -0.95
CCDC28B-205ENST00000483009 GAGE2AQ6NT46 116 aa9.09□□□□□ -0.95
CCDC28B-205ENST00000483009 PCP2Q8IVA1 136 aa9.09□□□□□ -0.95
CCDC28B-205ENST00000483009 LINC00518Q8N0U6 118 aa9.09□□□□□ -0.95
CCDC28B-205ENST00000483009 HINT1P49773 126 aaPredicted RBP9.08□□□□□ -0.96
CCDC28B-205ENST00000483009 COPS9Q8WXC6 57 aa9.08□□□□□ -0.96
CCDC28B-205ENST00000483009 LPAP08519 4548 aa9.08□□□□□ -0.96
CCDC28B-205ENST00000483009 IFITM1P13164 125 aa9.07□□□□□ -0.96
CCDC28B-205ENST00000483009 Q6ZVH6 145 aa9.07□□□□□ -0.96
CCDC28B-205ENST00000483009 SPAG11AQ6PDA7 123 aa9.06□□□□□ -0.96
CCDC28B-205ENST00000483009 HSBP1L1C9JCN9 74 aa9.04□□□□□ -0.96
CCDC28B-205ENST00000483009 Q8NBF4 154 aa9.04□□□□□ -0.96
CCDC28B-205ENST00000483009 RETNLBQ9BQ08 111 aa9.04□□□□□ -0.96
CCDC28B-205ENST00000483009 C4orf48Q5BLP8 95 aa9.03□□□□□ -0.96
CCDC28B-205ENST00000483009 C5orf52A6NGY3 159 aa9.02□□□□□ -0.97
CCDC28B-205ENST00000483009 MUSTN1Q8IVN3 82 aa9.02□□□□□ -0.97
CCDC28B-205ENST00000483009 RNF213Q63HN8 5207 aa9.01□□□□□ -0.97
CCDC28B-205ENST00000483009 IGLV9-49A0A0B4J1Y8 123 aa9.01□□□□□ -0.97
CCDC28B-205ENST00000483009 MOBPQ13875 183 aa9.01□□□□□ -0.97
CCDC28B-205ENST00000483009 C6orf99Q4VX62 202 aa9.01□□□□□ -0.97
CCDC28B-205ENST00000483009 DHRS4-AS1Q9P1J3 65 aa9.01□□□□□ -0.97
CCDC28B-205ENST00000483009 COX7BP24311 80 aa9□□□□□ -0.97
CCDC28B-205ENST00000483009 ELOF1P60002 83 aaKnown RBP9□□□□□ -0.97
CCDC28B-205ENST00000483009 ST20-AS1Q8NBB2 130 aa9□□□□□ -0.97
CCDC28B-205ENST00000483009 SSBP3-AS1Q7Z2R9 100 aa8.99□□□□□ -0.97
CCDC28B-205ENST00000483009 A6NDN8 102 aa8.98□□□□□ -0.97
CCDC28B-205ENST00000483009 SCGB1D1O95968 90 aa8.97□□□□□ -0.97
CCDC28B-205ENST00000483009 SPINK1P00995 79 aa8.97□□□□□ -0.97
CCDC28B-205ENST00000483009 IGLV7-46A0A075B6I9 117 aa8.96□□□□□ -0.98
CCDC28B-205ENST00000483009 TRAV13-2A0A0B4J235 113 aa8.96□□□□□ -0.98
CCDC28B-205ENST00000483009 TRBV7-6A0A0J9YX20 115 aa8.96□□□□□ -0.98
CCDC28B-205ENST00000483009 SPRR1BP22528 89 aa8.95□□□□□ -0.98
CCDC28B-205ENST00000483009 C9orf153Q5TBE3 101 aa8.95□□□□□ -0.98
CCDC28B-205ENST00000483009 A0A1B0GWB2 263 aa8.94□□□□□ -0.98
CCDC28B-205ENST00000483009 RPS29P62273 56 aaKnown RBP8.93□□□□□ -0.98
CCDC28B-205ENST00000483009 TPRXLQ17RH7 258 aa8.93□□□□□ -0.98
CCDC28B-205ENST00000483009 SLC25A34Q6PIV7 304 aa8.93□□□□□ -0.98
CCDC28B-205ENST00000483009 FP248Q71RG6 208 aaPredicted RBP8.93□□□□□ -0.98
CCDC28B-205ENST00000483009 A4D1N5 150 aa8.9□□□□□ -0.98
CCDC28B-205ENST00000483009 COX8AP10176 69 aa8.9□□□□□ -0.98
CCDC28B-205ENST00000483009 SMIM11BQ8TCY0 68 aa8.9□□□□□ -0.98
CCDC28B-205ENST00000483009 LAMTOR3Q9UHA4 124 aa8.9□□□□□ -0.98
CCDC28B-205ENST00000483009 TAL2Q16559 108 aa8.89□□□□□ -0.99
CCDC28B-205ENST00000483009 CDIP1Q9H305 208 aa8.88□□□□□ -0.99
CCDC28B-205ENST00000483009 TEX49A0A1B0GTD5 131 aa8.87□□□□□ -0.99
CCDC28B-205ENST00000483009 DLEU1O43261 78 aa8.87□□□□□ -0.99
CCDC28B-205ENST00000483009 Q8N377 158 aa8.87□□□□□ -0.99
CCDC28B-205ENST00000483009 DEFB105AQ8NG35 78 aa8.87□□□□□ -0.99
CCDC28B-205ENST00000483009 HIST1H4GQ99525 98 aa8.86□□□□□ -0.99
CCDC28B-205ENST00000483009 NHP2Q9NX24 153 aaKnown RBP8.86□□□□□ -0.99
CCDC28B-205ENST00000483009 IGLV5-48A0A075B6I7 105 aa8.85□□□□□ -0.99
CCDC28B-205ENST00000483009 SLC25A20O43772 301 aa8.85□□□□□ -0.99
CCDC28B-205ENST00000483009 Q1RN00 199 aa8.85□□□□□ -0.99
CCDC28B-205ENST00000483009 LINC01547P58512 204 aaPredicted RBP8.84□□□□□ -0.99
CCDC28B-205ENST00000483009 VAMP3Q15836 100 aa8.84□□□□□ -0.99
CCDC28B-205ENST00000483009 PAM16Q9Y3D7 125 aa8.84□□□□□ -0.99
CCDC28B-205ENST00000483009 SPATA45Q537H7 98 aa8.83□□□□□ -1
CCDC28B-205ENST00000483009 C14orf144Q96I85 54 aa8.83□□□□□ -1
CCDC28B-205ENST00000483009 SMIM29Q86T20 159 aa8.82□□□□□ -1
CCDC28B-205ENST00000483009 C12orf57Q99622 126 aa8.82□□□□□ -1
CCDC28B-205ENST00000483009 VAMP8Q9BV40 100 aa8.82□□□□□ -1
CCDC28B-205ENST00000483009 KRTAP13-3Q3SY46 172 aa8.81□□□□□ -1
CCDC28B-205ENST00000483009 LINC00575Q6W349 94 aa8.8□□□□□ -1
CCDC28B-205ENST00000483009 PRO1933Q9H354 126 aa8.8□□□□□ -1
CCDC28B-205ENST00000483009 HIGD1BQ9P298 99 aa8.8□□□□□ -1
CCDC28B-205ENST00000483009 HRCT1Q6UXD1 115 aa8.79□□□□□ -1
CCDC28B-205ENST00000483009 LIMD2Q9BT23 127 aa8.79□□□□□ -1
CCDC28B-205ENST00000483009 MUC17Q685J3 4493 aa8.78□□□□□ -1
CCDC28B-205ENST00000483009 CD164Q04900 197 aa8.78□□□□□ -1
CCDC28B-205ENST00000483009 hADV29S1A0JD25 119 aa8.76□□□□□ -1.01
CCDC28B-205ENST00000483009 C2orf91Q6ZV80 131 aa8.76□□□□□ -1.01
CCDC28B-205ENST00000483009 H7C2G1 150 aa8.75□□□□□ -1.01
CCDC28B-205ENST00000483009 BVES-AS1Q5T3Y7 98 aa8.75□□□□□ -1.01
CCDC28B-205ENST00000483009 Q6ZQY7 126 aa8.75□□□□□ -1.01
CCDC28B-205ENST00000483009 CFC1BP0CG36 223 aa8.74□□□□□ -1.01
CCDC28B-205ENST00000483009 CFC1P0CG37 223 aa8.74□□□□□ -1.01
CCDC28B-205ENST00000483009 RAB37Q96AX2 223 aa8.74□□□□□ -1.01
CCDC28B-205ENST00000483009 A0A0B4J2C4 111 aa8.73□□□□□ -1.01
CCDC28B-205ENST00000483009 MUC2Q02817 5179 aa8.73□□□□□ -1.01
CCDC28B-205ENST00000483009 F8WEM9 126 aa8.72□□□□□ -1.01
CCDC28B-205ENST00000483009 PYY3Q5JQD4 70 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms