RNA–Protein interactions for RNA: ENST00000482158.1

SF3B1-210, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 772 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-210ENST00000482158 ASXL3Q9C0F0 2248 aa1.28□□□□□ -2.2
SF3B1-210ENST00000482158 TNRC6CQ9HCJ0 1690 aaKnown RBP1.27□□□□□ -2.21
SF3B1-210ENST00000482158 RPL37P61927 97 aaKnown RBP1.27□□□□□ -2.21
SF3B1-210ENST00000482158 LINC00575Q6W349 94 aa1.27□□□□□ -2.21
SF3B1-210ENST00000482158 SSBP3-AS1Q7Z2R9 100 aa1.27□□□□□ -2.21
SF3B1-210ENST00000482158 C4BP0C0L5 1744 aa1.26□□□□□ -2.21
SF3B1-210ENST00000482158 KNTC1P50748 2209 aa1.26□□□□□ -2.21
SF3B1-210ENST00000482158 PIN1P1O15428 100 aa1.26□□□□□ -2.21
SF3B1-210ENST00000482158 SPINK13Q1W4C9 94 aa1.26□□□□□ -2.21
SF3B1-210ENST00000482158 DEFB114Q30KQ6 69 aa1.26□□□□□ -2.21
SF3B1-210ENST00000482158 LMO7Q8WWI1 1683 aa1.26□□□□□ -2.21
SF3B1-210ENST00000482158 M0R1W7 72 aa1.25□□□□□ -2.21
SF3B1-210ENST00000482158 KCNQ1DNQ9H478 68 aa1.25□□□□□ -2.21
SF3B1-210ENST00000482158 AHCTF1Q8WYP5 2266 aa1.25□□□□□ -2.21
SF3B1-210ENST00000482158 SRCAPQ6ZRS2 3230 aa1.25□□□□□ -2.21
SF3B1-210ENST00000482158 IGIPA6NJ69 53 aa1.24□□□□□ -2.21
SF3B1-210ENST00000482158 CPSF4LA6NMK7 179 aaKnown RBP1.24□□□□□ -2.21
SF3B1-210ENST00000482158 ABRACLQ9P1F3 81 aa1.24□□□□□ -2.21
SF3B1-210ENST00000482158 SMIM27A0A1W2PRY6 76 aa1.23□□□□□ -2.21
SF3B1-210ENST00000482158 ZDBF2Q9HCK1 2354 aa1.23□□□□□ -2.21
SF3B1-210ENST00000482158 NCOR1O75376 2440 aa1.23□□□□□ -2.21
SF3B1-210ENST00000482158 ETDCA0A1B0GVM5 59 aa1.22□□□□□ -2.21
SF3B1-210ENST00000482158 I3L3M4 83 aa1.22□□□□□ -2.21
SF3B1-210ENST00000482158 COX6B1P14854 86 aa1.22□□□□□ -2.21
SF3B1-210ENST00000482158 PLNP26678 52 aa1.22□□□□□ -2.21
SF3B1-210ENST00000482158 SERF2P84101 59 aa1.22□□□□□ -2.21
SF3B1-210ENST00000482158 BPTFQ12830 3046 aa1.21□□□□□ -2.22
SF3B1-210ENST00000482158 RPL38P63173 70 aaKnown RBP1.21□□□□□ -2.22
SF3B1-210ENST00000482158 ANKRD17O75179 2603 aaKnown RBP1.21□□□□□ -2.22
SF3B1-210ENST00000482158 CEP290O15078 2479 aa1.21□□□□□ -2.22
SF3B1-210ENST00000482158 SPTY2D1-AS1A0A0U1RR47 76 aa1.2□□□□□ -2.22
SF3B1-210ENST00000482158 UBE2DNLQ8IWF7 75 aa1.2□□□□□ -2.22
SF3B1-210ENST00000482158 CEP350Q5VT06 3117 aa1.2□□□□□ -2.22
SF3B1-210ENST00000482158 NAV3Q8IVL0 2385 aa1.2□□□□□ -2.22
SF3B1-210ENST00000482158 PTPRZ1P23471 2315 aaPredicted RBP1.2□□□□□ -2.22
SF3B1-210ENST00000482158 LINC01546A6NGU7 62 aa1.19□□□□□ -2.22
SF3B1-210ENST00000482158 K7EIL1 84 aa1.19□□□□□ -2.22
SF3B1-210ENST00000482158 FBN2P35556 2912 aa1.19□□□□□ -2.22
SF3B1-210ENST00000482158 CNTRLQ7Z7A1 2325 aa1.18□□□□□ -2.22
SF3B1-210ENST00000482158 CNOT1A5YKK6 2376 aaKnown RBP1.18□□□□□ -2.22
SF3B1-210ENST00000482158 GOLGA4Q13439 2230 aaKnown RBP1.18□□□□□ -2.22
SF3B1-210ENST00000482158 DEFB131BA0A096LNP1 70 aa1.18□□□□□ -2.22
SF3B1-210ENST00000482158 GOLGB1Q14789 3259 aaKnown RBP1.18□□□□□ -2.22
SF3B1-210ENST00000482158 DOPEY2Q9Y3R5 2298 aa1.18□□□□□ -2.22
SF3B1-210ENST00000482158 DUOX1Q9NRD9 1551 aa1.17□□□□□ -2.22
SF3B1-210ENST00000482158 I3L2K1 104 aa1.17□□□□□ -2.22
SF3B1-210ENST00000482158 CRIPTQ9P021 101 aa1.17□□□□□ -2.22
SF3B1-210ENST00000482158 PCNTO95613 3336 aa1.17□□□□□ -2.22
SF3B1-210ENST00000482158 UTRNP46939 3433 aa1.17□□□□□ -2.22
SF3B1-210ENST00000482158 MRPL33O75394 65 aaKnown RBP1.16□□□□□ -2.22
SF3B1-210ENST00000482158 CRIP1P50238 77 aa1.16□□□□□ -2.22
SF3B1-210ENST00000482158 CACNA1EQ15878 2313 aa1.15□□□□□ -2.23
SF3B1-210ENST00000482158 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.15□□□□□ -2.23
SF3B1-210ENST00000482158 SPINK4O60575 86 aa1.15□□□□□ -2.23
SF3B1-210ENST00000482158 DEFB123Q8N688 67 aa1.15□□□□□ -2.23
SF3B1-210ENST00000482158 TP53AIP1Q9HCN2 124 aa1.15□□□□□ -2.23
SF3B1-210ENST00000482158 TIMM8BQ9Y5J9 83 aaPredicted RBP1.15□□□□□ -2.23
SF3B1-210ENST00000482158 FAM186AA6NE01 2351 aa1.15□□□□□ -2.23
SF3B1-210ENST00000482158 FAM208BQ5VWN6 2430 aa1.14□□□□□ -2.23
SF3B1-210ENST00000482158 H0YGX0 51 aa1.14□□□□□ -2.23
SF3B1-210ENST00000482158 K7EQZ3 153 aa1.14□□□□□ -2.23
SF3B1-210ENST00000482158 PLCE1Q9P212 2302 aa1.14□□□□□ -2.23
SF3B1-210ENST00000482158 MRPL34Q9BQ48 92 aaKnown RBP1.13□□□□□ -2.23
SF3B1-210ENST00000482158 PRO3102Q9H379 93 aa1.13□□□□□ -2.23
SF3B1-210ENST00000482158 CDKN2A-AS1Q9UH64 79 aa1.13□□□□□ -2.23
SF3B1-210ENST00000482158 RIF1Q5UIP0 2472 aaKnown RBP1.13□□□□□ -2.23
SF3B1-210ENST00000482158 TPRP12270 2363 aaKnown RBP1.12□□□□□ -2.23
SF3B1-210ENST00000482158 LOC730098B7Z3J9 87 aa1.12□□□□□ -2.23
SF3B1-210ENST00000482158 NDUFA3O95167 84 aa1.12□□□□□ -2.23
SF3B1-210ENST00000482158 PIGYQ3MUY2 71 aa1.12□□□□□ -2.23
SF3B1-210ENST00000482158 USMG5Q96IX5 58 aa1.12□□□□□ -2.23
SF3B1-210ENST00000482158 TNRC18O15417 2968 aaPredicted RBP1.12□□□□□ -2.23
SF3B1-210ENST00000482158 MKI67P46013 3256 aaKnown RBP1.12□□□□□ -2.23
SF3B1-210ENST00000482158 NOTCH1P46531 2555 aa1.11□□□□□ -2.23
SF3B1-210ENST00000482158 KNL1Q8NG31 2342 aa1.11□□□□□ -2.23
SF3B1-210ENST00000482158 LINC00158P58513 81 aa1.11□□□□□ -2.23
SF3B1-210ENST00000482158 FXYD6P3P58550 94 aa1.11□□□□□ -2.23
SF3B1-210ENST00000482158 KRTAP5-10Q6L8G5 202 aa1.11□□□□□ -2.23
SF3B1-210ENST00000482158 Q9Y3F1 56 aa1.11□□□□□ -2.23
SF3B1-210ENST00000482158 CENPFP49454 3210 aa1.11□□□□□ -2.23
SF3B1-210ENST00000482158 TTC28Q96AY4 2481 aa1.1□□□□□ -2.23
SF3B1-210ENST00000482158 MUC16Q8WXI7 14507 aa1.1□□□□□ -2.23
SF3B1-210ENST00000482158 JMJD1CQ15652 2540 aa1.1□□□□□ -2.23
SF3B1-210ENST00000482158 PIEZO1Q92508 2521 aa1.1□□□□□ -2.23
SF3B1-210ENST00000482158 CACNA1HO95180 2353 aa1.1□□□□□ -2.23
SF3B1-210ENST00000482158 SNRPGP62308 76 aaKnown RBP1.1□□□□□ -2.23
SF3B1-210ENST00000482158 Q8IZM0 81 aa1.1□□□□□ -2.23
SF3B1-210ENST00000482158 CNFNQ9BYD5 112 aa1.1□□□□□ -2.23
SF3B1-210ENST00000482158 C10orf95Q9H7T3 257 aa1.1□□□□□ -2.23
SF3B1-210ENST00000482158 ZNF469Q96JG9 3925 aaPredicted RBP1.09□□□□□ -2.23
SF3B1-210ENST00000482158 COL6A3P12111 3177 aa1.09□□□□□ -2.23
SF3B1-210ENST00000482158 ACACAQ13085 2346 aa1.09□□□□□ -2.23
SF3B1-210ENST00000482158 A0A0C4DFX4 3053 aa1.09□□□□□ -2.23
SF3B1-210ENST00000482158 COX6A2Q02221 97 aa1.09□□□□□ -2.23
SF3B1-210ENST00000482158 COX6B2Q6YFQ2 88 aa1.09□□□□□ -2.23
SF3B1-210ENST00000482158 EP300Q09472 2414 aaPredicted RBP1.09□□□□□ -2.24
SF3B1-210ENST00000482158 DNAH12Q6ZR08 3092 aa1.08□□□□□ -2.24
SF3B1-210ENST00000482158 PRUNE2Q8WUY3 3088 aa1.08□□□□□ -2.24
SF3B1-210ENST00000482158 LYNX1G3V0Z9 82 aa1.08□□□□□ -2.24
SF3B1-210ENST00000482158 H0YAA0 97 aa1.08□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms