RNA–Protein interactions for RNA: ENST00000478603.5

C9orf3-216, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 802 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-216ENST00000478603 KRTAP13-3Q3SY46 172 aa12.87□□□□□ -0.35
C9orf3-216ENST00000478603 E9PLD3 99 aa12.86□□□□□ -0.35
C9orf3-216ENST00000478603 SSBP3-AS1Q7Z2R9 100 aa12.84□□□□□ -0.35
C9orf3-216ENST00000478603 ZNF73O43830 326 aaPredicted RBP12.83□□□□□ -0.36
C9orf3-216ENST00000478603 SYS1-DBNDD2H3BUS1 97 aa12.81□□□□□ -0.36
C9orf3-216ENST00000478603 JOSD1Q15040 202 aaPredicted RBP12.81□□□□□ -0.36
C9orf3-216ENST00000478603 Q8N377 158 aa12.81□□□□□ -0.36
C9orf3-216ENST00000478603 ST20-AS1Q8NBB2 130 aa12.81□□□□□ -0.36
C9orf3-216ENST00000478603 C9orf153Q5TBE3 101 aa12.79□□□□□ -0.36
C9orf3-216ENST00000478603 LITAFQ99732 161 aa12.79□□□□□ -0.36
C9orf3-216ENST00000478603 HIST1H2BKO60814 126 aa12.78□□□□□ -0.36
C9orf3-216ENST00000478603 HIST1H2BJP06899 126 aa12.78□□□□□ -0.36
C9orf3-216ENST00000478603 HIST1H2BOP23527 126 aa12.78□□□□□ -0.36
C9orf3-216ENST00000478603 HIST1H2BBP33778 126 aa12.78□□□□□ -0.36
C9orf3-216ENST00000478603 HIST1H2BDP58876 126 aa12.78□□□□□ -0.36
C9orf3-216ENST00000478603 RPS29P62273 56 aaKnown RBP12.78□□□□□ -0.36
C9orf3-216ENST00000478603 HIST1H2BCP62807 126 aa12.78□□□□□ -0.36
C9orf3-216ENST00000478603 HIST2H2BEQ16778 126 aa12.78□□□□□ -0.36
C9orf3-216ENST00000478603 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.78□□□□□ -0.36
C9orf3-216ENST00000478603 HIST1H2BHQ93079 126 aa12.78□□□□□ -0.36
C9orf3-216ENST00000478603 HIST1H2BNQ99877 126 aa12.78□□□□□ -0.36
C9orf3-216ENST00000478603 HIST1H2BMQ99879 126 aa12.78□□□□□ -0.36
C9orf3-216ENST00000478603 LINC00308Q8TCZ7 52 aa12.77□□□□□ -0.37
C9orf3-216ENST00000478603 KRTAP9-2Q9BYQ4 174 aa12.76□□□□□ -0.37
C9orf3-216ENST00000478603 ASB16-AS1Q495Z4 193 aa12.75□□□□□ -0.37
C9orf3-216ENST00000478603 LINC01545Q5VT33 79 aa12.75□□□□□ -0.37
C9orf3-216ENST00000478603 OR13C6PQ8NH95 151 aa12.75□□□□□ -0.37
C9orf3-216ENST00000478603 SPANXCQ9NY87 97 aa12.75□□□□□ -0.37
C9orf3-216ENST00000478603 SLC25A20O43772 301 aa12.74□□□□□ -0.37
C9orf3-216ENST00000478603 HINT1P49773 126 aaPredicted RBP12.73□□□□□ -0.37
C9orf3-216ENST00000478603 TTTY13Q9BZ97 58 aa12.73□□□□□ -0.37
C9orf3-216ENST00000478603 TIMM17BO60830 172 aa12.72□□□□□ -0.37
C9orf3-216ENST00000478603 ZNF815PA8K554 130 aa12.71□□□□□ -0.37
C9orf3-216ENST00000478603 PET117Q6UWS5 81 aa12.71□□□□□ -0.37
C9orf3-216ENST00000478603 CBY1Q9Y3M2 126 aa12.71□□□□□ -0.37
C9orf3-216ENST00000478603 KRTAP4-1Q9BYQ7 146 aa12.7□□□□□ -0.38
C9orf3-216ENST00000478603 KRTAP3-3Q9BYR6 98 aa12.69□□□□□ -0.38
C9orf3-216ENST00000478603 KRTAP3-2Q9BYR7 98 aa12.69□□□□□ -0.38
C9orf3-216ENST00000478603 C5orf52A6NGY3 159 aa12.68□□□□□ -0.38
C9orf3-216ENST00000478603 C3orf79P0CE67 100 aa12.67□□□□□ -0.38
C9orf3-216ENST00000478603 SEC61BP60468 96 aaKnown RBP12.67□□□□□ -0.38
C9orf3-216ENST00000478603 SPANXDQ9BXN6 97 aa12.66□□□□□ -0.38
C9orf3-216ENST00000478603 SPRR1BP22528 89 aa12.65□□□□□ -0.38
C9orf3-216ENST00000478603 DHRS4-AS1Q9P1J3 65 aa12.65□□□□□ -0.38
C9orf3-216ENST00000478603 HRCT1Q6UXD1 115 aa12.63□□□□□ -0.39
C9orf3-216ENST00000478603 KRTDAPP60985 99 aa12.62□□□□□ -0.39
C9orf3-216ENST00000478603 C6orf99Q4VX62 202 aa12.62□□□□□ -0.39
C9orf3-216ENST00000478603 COX7BP24311 80 aa12.61□□□□□ -0.39
C9orf3-216ENST00000478603 ELOF1P60002 83 aaKnown RBP12.61□□□□□ -0.39
C9orf3-216ENST00000478603 XP32Q5T750 250 aa12.61□□□□□ -0.39
C9orf3-216ENST00000478603 SLC25A34Q6PIV7 304 aa12.6□□□□□ -0.39
C9orf3-216ENST00000478603 LINC00518Q8N0U6 118 aa12.6□□□□□ -0.39
C9orf3-216ENST00000478603 LAMTOR3Q9UHA4 124 aa12.59□□□□□ -0.39
C9orf3-216ENST00000478603 SCGB1D4Q6XE38 83 aa12.57□□□□□ -0.4
C9orf3-216ENST00000478603 DEFB105AQ8NG35 78 aa12.57□□□□□ -0.4
C9orf3-216ENST00000478603 Q1RN00 199 aa12.56□□□□□ -0.4
C9orf3-216ENST00000478603 ANKRD39Q53RE8 183 aa12.56□□□□□ -0.4
C9orf3-216ENST00000478603 COA6Q5JTJ3 125 aaKnown RBP12.56□□□□□ -0.4
C9orf3-216ENST00000478603 TAL2Q16559 108 aa12.55□□□□□ -0.4
C9orf3-216ENST00000478603 LIMD2Q9BT23 127 aa12.55□□□□□ -0.4
C9orf3-216ENST00000478603 LINC01547P58512 204 aaPredicted RBP12.54□□□□□ -0.4
C9orf3-216ENST00000478603 ATOH7Q8N100 152 aa12.54□□□□□ -0.4
C9orf3-216ENST00000478603 C20orf202A1L168 122 aa12.51□□□□□ -0.41
C9orf3-216ENST00000478603 TRBV7-6A0A0J9YX20 115 aa12.49□□□□□ -0.41
C9orf3-216ENST00000478603 TEX49A0A1B0GTD5 131 aa12.49□□□□□ -0.41
C9orf3-216ENST00000478603 A6NDN8 102 aa12.49□□□□□ -0.41
C9orf3-216ENST00000478603 PCP2Q8IVA1 136 aa12.49□□□□□ -0.41
C9orf3-216ENST00000478603 C9orf92A6NGG3 77 aa12.48□□□□□ -0.41
C9orf3-216ENST00000478603 IFITM1P13164 125 aa12.48□□□□□ -0.41
C9orf3-216ENST00000478603 MUSTN1Q8IVN3 82 aa12.48□□□□□ -0.41
C9orf3-216ENST00000478603 A0A1B0GWB2 263 aa12.47□□□□□ -0.41
C9orf3-216ENST00000478603 SMIM29Q86T20 159 aa12.47□□□□□ -0.41
C9orf3-216ENST00000478603 COPS9Q8WXC6 57 aa12.47□□□□□ -0.41
C9orf3-216ENST00000478603 PRO1933Q9H354 126 aa12.47□□□□□ -0.41
C9orf3-216ENST00000478603 H7C2G1 150 aa12.46□□□□□ -0.41
C9orf3-216ENST00000478603 CD164Q04900 197 aa12.45□□□□□ -0.42
C9orf3-216ENST00000478603 A0A0G2JQZ4 141 aa12.44□□□□□ -0.42
C9orf3-216ENST00000478603 Q6ZVH6 145 aa12.44□□□□□ -0.42
C9orf3-216ENST00000478603 IGLV5-48A0A075B6I7 105 aa12.42□□□□□ -0.42
C9orf3-216ENST00000478603 PCOTHQ58A44 107 aa12.42□□□□□ -0.42
C9orf3-216ENST00000478603 AKR1D1P51857 326 aa12.41□□□□□ -0.42
C9orf3-216ENST00000478603 SMIM11BQ8TCY0 68 aa12.39□□□□□ -0.43
C9orf3-216ENST00000478603 KRTAP9-6A0A140TA67 174 aa12.38□□□□□ -0.43
C9orf3-216ENST00000478603 LCE2CQ5TA81 110 aa12.38□□□□□ -0.43
C9orf3-216ENST00000478603 TRAV13-2A0A0B4J235 113 aa12.37□□□□□ -0.43
C9orf3-216ENST00000478603 IGLV8-61A0A075B6I0 122 aa12.36□□□□□ -0.43
C9orf3-216ENST00000478603 A4D1N5 150 aa12.36□□□□□ -0.43
C9orf3-216ENST00000478603 C1orf195Q5TG92 126 aa12.36□□□□□ -0.43
C9orf3-216ENST00000478603 Q5XG85 94 aa12.36□□□□□ -0.43
C9orf3-216ENST00000478603 KRTAP19-2Q3LHN2 52 aa12.34□□□□□ -0.43
C9orf3-216ENST00000478603 NHP2Q9NX24 153 aaKnown RBP12.33□□□□□ -0.44
C9orf3-216ENST00000478603 SNRPEP62304 92 aaKnown RBP12.32□□□□□ -0.44
C9orf3-216ENST00000478603 HIST3H2BBQ8N257 126 aa12.28□□□□□ -0.44
C9orf3-216ENST00000478603 HIST1H2BLQ99880 126 aa12.28□□□□□ -0.44
C9orf3-216ENST00000478603 VAMP3Q15836 100 aa12.25□□□□□ -0.45
C9orf3-216ENST00000478603 LINC00575Q6W349 94 aa12.25□□□□□ -0.45
C9orf3-216ENST00000478603 S100A2P29034 98 aa12.24□□□□□ -0.45
C9orf3-216ENST00000478603 HSBP1L1C9JCN9 74 aa12.23□□□□□ -0.45
C9orf3-216ENST00000478603 F8WEM9 126 aa12.23□□□□□ -0.45
C9orf3-216ENST00000478603 MT1HP80294 61 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms