RNA–Protein interactions for RNA: ENST00000478021.1

TRAF4-211, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-211ENST00000478021 ZNF706Q9Y5V0 76 aaPredicted RBP13.29□□□□□ -0.28
TRAF4-211ENST00000478021 TRAV23DV6A0A075B6W5 121 aa13.28□□□□□ -0.28
TRAF4-211ENST00000478021 SPANXCQ9NY87 97 aa13.28□□□□□ -0.28
TRAF4-211ENST00000478021 PRR4Q16378 134 aa13.27□□□□□ -0.29
TRAF4-211ENST00000478021 SCGB1D4Q6XE38 83 aa13.27□□□□□ -0.29
TRAF4-211ENST00000478021 PPDPFQ9H3Y8 114 aa13.27□□□□□ -0.29
TRAF4-211ENST00000478021 RNF213Q63HN8 5207 aa13.26□□□□□ -0.29
TRAF4-211ENST00000478021 LINC00304Q8N9R0 145 aa13.26□□□□□ -0.29
TRAF4-211ENST00000478021 ERC2-IT1O76042 136 aa13.25□□□□□ -0.29
TRAF4-211ENST00000478021 S100A6P06703 90 aa13.25□□□□□ -0.29
TRAF4-211ENST00000478021 AKR1D1P51857 326 aa13.24□□□□□ -0.29
TRAF4-211ENST00000478021 Q6ZRX8 168 aa13.24□□□□□ -0.29
TRAF4-211ENST00000478021 PCP2Q8IVA1 136 aa13.24□□□□□ -0.29
TRAF4-211ENST00000478021 OR13C6PQ8NH95 151 aa13.24□□□□□ -0.29
TRAF4-211ENST00000478021 Q9BRP9 147 aa13.24□□□□□ -0.29
TRAF4-211ENST00000478021 ZNF73O43830 326 aaPredicted RBP13.23□□□□□ -0.29
TRAF4-211ENST00000478021 SPANXDQ9BXN6 97 aa13.22□□□□□ -0.29
TRAF4-211ENST00000478021 GAGE2AQ6NT46 116 aa13.2□□□□□ -0.3
TRAF4-211ENST00000478021 LPAP08519 4548 aa13.18□□□□□ -0.3
TRAF4-211ENST00000478021 SNRPEP62304 92 aaKnown RBP13.18□□□□□ -0.3
TRAF4-211ENST00000478021 JOSD1Q15040 202 aaPredicted RBP13.17□□□□□ -0.3
TRAF4-211ENST00000478021 CBY1Q9Y3M2 126 aa13.17□□□□□ -0.3
TRAF4-211ENST00000478021 LINC00483Q53H64 154 aa13.16□□□□□ -0.3
TRAF4-211ENST00000478021 LINC00518Q8N0U6 118 aa13.15□□□□□ -0.3
TRAF4-211ENST00000478021 RETNLBQ9BQ08 111 aa13.15□□□□□ -0.3
TRAF4-211ENST00000478021 HINT1P49773 126 aaPredicted RBP13.14□□□□□ -0.31
TRAF4-211ENST00000478021 IFITM1P13164 125 aa13.13□□□□□ -0.31
TRAF4-211ENST00000478021 MUSTN1Q8IVN3 82 aa13.13□□□□□ -0.31
TRAF4-211ENST00000478021 HSBP1L1C9JCN9 74 aa13.12□□□□□ -0.31
TRAF4-211ENST00000478021 Q8NBF4 154 aa13.12□□□□□ -0.31
TRAF4-211ENST00000478021 COPS9Q8WXC6 57 aa13.12□□□□□ -0.31
TRAF4-211ENST00000478021 IGLV9-49A0A0B4J1Y8 123 aa13.11□□□□□ -0.31
TRAF4-211ENST00000478021 Q6ZVH6 145 aa13.11□□□□□ -0.31
TRAF4-211ENST00000478021 ST20-AS1Q8NBB2 130 aa13.1□□□□□ -0.31
TRAF4-211ENST00000478021 C5orf52A6NGY3 159 aa13.09□□□□□ -0.31
TRAF4-211ENST00000478021 SCGB1D1O95968 90 aa13.09□□□□□ -0.31
TRAF4-211ENST00000478021 MOBPQ13875 183 aa13.09□□□□□ -0.31
TRAF4-211ENST00000478021 C6orf99Q4VX62 202 aa13.09□□□□□ -0.31
TRAF4-211ENST00000478021 C4orf48Q5BLP8 95 aa13.07□□□□□ -0.32
TRAF4-211ENST00000478021 A6NDN8 102 aa13.06□□□□□ -0.32
TRAF4-211ENST00000478021 COX7BP24311 80 aa13.06□□□□□ -0.32
TRAF4-211ENST00000478021 SPAG11AQ6PDA7 123 aa13.06□□□□□ -0.32
TRAF4-211ENST00000478021 ELOF1P60002 83 aaKnown RBP13.04□□□□□ -0.32
TRAF4-211ENST00000478021 CTAG1AP78358 180 aa13.04□□□□□ -0.32
TRAF4-211ENST00000478021 DHRS4-AS1Q9P1J3 65 aa13.04□□□□□ -0.32
TRAF4-211ENST00000478021 C9orf153Q5TBE3 101 aa13.01□□□□□ -0.33
TRAF4-211ENST00000478021 SSBP3-AS1Q7Z2R9 100 aa12.99□□□□□ -0.33
TRAF4-211ENST00000478021 IGLV7-46A0A075B6I9 117 aa12.97□□□□□ -0.33
TRAF4-211ENST00000478021 TRAV13-2A0A0B4J235 113 aa12.97□□□□□ -0.33
TRAF4-211ENST00000478021 SPINK1P00995 79 aa12.96□□□□□ -0.33
TRAF4-211ENST00000478021 TRBV7-6A0A0J9YX20 115 aa12.95□□□□□ -0.34
TRAF4-211ENST00000478021 A0A1B0GWB2 263 aa12.95□□□□□ -0.34
TRAF4-211ENST00000478021 A4D1N5 150 aa12.94□□□□□ -0.34
TRAF4-211ENST00000478021 COX8AP10176 69 aa12.94□□□□□ -0.34
TRAF4-211ENST00000478021 SPRR1BP22528 89 aa12.94□□□□□ -0.34
TRAF4-211ENST00000478021 SMIM11BQ8TCY0 68 aa12.94□□□□□ -0.34
TRAF4-211ENST00000478021 DEFB105AQ8NG35 78 aa12.93□□□□□ -0.34
TRAF4-211ENST00000478021 TAL2Q16559 108 aa12.91□□□□□ -0.34
TRAF4-211ENST00000478021 SLC25A34Q6PIV7 304 aa12.9□□□□□ -0.34
TRAF4-211ENST00000478021 HIST1H4GQ99525 98 aa12.9□□□□□ -0.34
TRAF4-211ENST00000478021 PAM16Q9Y3D7 125 aa12.9□□□□□ -0.34
TRAF4-211ENST00000478021 TPRXLQ17RH7 258 aa12.89□□□□□ -0.35
TRAF4-211ENST00000478021 C12orf57Q99622 126 aa12.89□□□□□ -0.35
TRAF4-211ENST00000478021 LAMTOR3Q9UHA4 124 aa12.89□□□□□ -0.35
TRAF4-211ENST00000478021 Q1RN00 199 aa12.88□□□□□ -0.35
TRAF4-211ENST00000478021 SPATA45Q537H7 98 aa12.88□□□□□ -0.35
TRAF4-211ENST00000478021 C14orf144Q96I85 54 aa12.88□□□□□ -0.35
TRAF4-211ENST00000478021 RPS29P62273 56 aaKnown RBP12.86□□□□□ -0.35
TRAF4-211ENST00000478021 FP248Q71RG6 208 aaPredicted RBP12.86□□□□□ -0.35
TRAF4-211ENST00000478021 Q8N377 158 aa12.86□□□□□ -0.35
TRAF4-211ENST00000478021 CDIP1Q9H305 208 aa12.86□□□□□ -0.35
TRAF4-211ENST00000478021 TEX49A0A1B0GTD5 131 aa12.85□□□□□ -0.35
TRAF4-211ENST00000478021 DLEU1O43261 78 aa12.85□□□□□ -0.35
TRAF4-211ENST00000478021 VAMP8Q9BV40 100 aa12.85□□□□□ -0.35
TRAF4-211ENST00000478021 LINC01547P58512 204 aaPredicted RBP12.83□□□□□ -0.36
TRAF4-211ENST00000478021 HRCT1Q6UXD1 115 aa12.83□□□□□ -0.36
TRAF4-211ENST00000478021 SMIM29Q86T20 159 aa12.81□□□□□ -0.36
TRAF4-211ENST00000478021 NHP2Q9NX24 153 aaKnown RBP12.81□□□□□ -0.36
TRAF4-211ENST00000478021 IGLV5-48A0A075B6I7 105 aa12.8□□□□□ -0.36
TRAF4-211ENST00000478021 SLC25A20O43772 301 aa12.8□□□□□ -0.36
TRAF4-211ENST00000478021 VAMP3Q15836 100 aa12.8□□□□□ -0.36
TRAF4-211ENST00000478021 LINC00575Q6W349 94 aa12.77□□□□□ -0.37
TRAF4-211ENST00000478021 C2orf91Q6ZV80 131 aa12.76□□□□□ -0.37
TRAF4-211ENST00000478021 HIGD1BQ9P298 99 aa12.76□□□□□ -0.37
TRAF4-211ENST00000478021 TMA7Q9Y2S6 64 aaKnown RBP12.76□□□□□ -0.37
TRAF4-211ENST00000478021 KRTAP13-3Q3SY46 172 aa12.75□□□□□ -0.37
TRAF4-211ENST00000478021 PRO1933Q9H354 126 aa12.75□□□□□ -0.37
TRAF4-211ENST00000478021 H7C2G1 150 aa12.74□□□□□ -0.37
TRAF4-211ENST00000478021 CFC1BP0CG36 223 aa12.73□□□□□ -0.37
TRAF4-211ENST00000478021 CFC1P0CG37 223 aa12.73□□□□□ -0.37
TRAF4-211ENST00000478021 A0A0G2JQZ4 141 aa12.72□□□□□ -0.37
TRAF4-211ENST00000478021 hADV29S1A0JD25 119 aa12.72□□□□□ -0.37
TRAF4-211ENST00000478021 PYY3Q5JQD4 70 aa12.71□□□□□ -0.37
TRAF4-211ENST00000478021 Q6ZQY7 126 aa12.71□□□□□ -0.37
TRAF4-211ENST00000478021 RAB37Q96AX2 223 aa12.71□□□□□ -0.37
TRAF4-211ENST00000478021 LIMD2Q9BT23 127 aa12.71□□□□□ -0.37
TRAF4-211ENST00000478021 MUC2Q02817 5179 aa12.69□□□□□ -0.38
TRAF4-211ENST00000478021 BVES-AS1Q5T3Y7 98 aa12.68□□□□□ -0.38
TRAF4-211ENST00000478021 CD164Q04900 197 aa12.67□□□□□ -0.38
TRAF4-211ENST00000478021 A0A0B4J2C4 111 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms