RNA–Protein interactions for RNA: ENST00000476135.5

HDAC9-223, Transcript of histone deacetylase 9, human

TSL 5

Gene HDAC9, Length 1,115 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-223	ENST00000476135	IGKC	P01834	107 aa		4.08	□□□□□ -1.76
HDAC9-223	ENST00000476135	TLX1NB	P0CAT3	122 aa		4.08	□□□□□ -1.76
HDAC9-223	ENST00000476135	AKR1D1	P51857	326 aa		4.08	□□□□□ -1.76
HDAC9-223	ENST00000476135	KRTAP13-3	Q3SY46	172 aa		4.08	□□□□□ -1.76
HDAC9-223	ENST00000476135	C2orf82	Q6UX34	121 aa		4.08	□□□□□ -1.76
HDAC9-223	ENST00000476135	UNQ6190/PRO20217	Q6UXQ8	127 aa		4.08	□□□□□ -1.76
HDAC9-223	ENST00000476135	LINC00304	Q8N9R0	145 aa		4.08	□□□□□ -1.76
HDAC9-223	ENST00000476135	C6orf48	Q9UBA6	75 aa		4.08	□□□□□ -1.76
HDAC9-223	ENST00000476135	CBY1	Q9Y3M2	126 aa		4.08	□□□□□ -1.76
HDAC9-223	ENST00000476135	TMEM223	A0PJW6	202 aa		4.07	□□□□□ -1.76
HDAC9-223	ENST00000476135	NDUFC2-KCTD14	E9PQ53	114 aa		4.07	□□□□□ -1.76
HDAC9-223	ENST00000476135	SYS1-DBNDD2	H3BUS1	97 aa		4.07	□□□□□ -1.76
HDAC9-223	ENST00000476135	S100A2	P29034	98 aa		4.07	□□□□□ -1.76
HDAC9-223	ENST00000476135	FP248	Q71RG6	208 aa	Predicted RBP	4.07	□□□□□ -1.76
HDAC9-223	ENST00000476135	KRTDAP	P60985	99 aa		4.06	□□□□□ -1.76
HDAC9-223	ENST00000476135	UBE2B	P63146	152 aa		4.06	□□□□□ -1.76
HDAC9-223	ENST00000476135	SSPO	A2VEC9	5147 aa		4.06	□□□□□ -1.76
HDAC9-223	ENST00000476135	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.05	□□□□□ -1.76
HDAC9-223	ENST00000476135	FAM168B	A1KXE4	195 aa		4.05	□□□□□ -1.76
HDAC9-223	ENST00000476135	C3orf79	P0CE67	100 aa		4.05	□□□□□ -1.76
HDAC9-223	ENST00000476135	KRTAP13-2	Q52LG2	175 aa		4.05	□□□□□ -1.76
HDAC9-223	ENST00000476135	LINC01545	Q5VT33	79 aa		4.05	□□□□□ -1.76
HDAC9-223	ENST00000476135	HIST3H2BB	Q8N257	126 aa		4.05	□□□□□ -1.76
HDAC9-223	ENST00000476135	PLEKHB2	Q96CS7	222 aa		4.05	□□□□□ -1.76
HDAC9-223	ENST00000476135	PMCHL2	Q9BQD1	86 aa		4.05	□□□□□ -1.76
HDAC9-223	ENST00000476135	MYMX	A0A1B0GTQ4	84 aa		4.04	□□□□□ -1.76
HDAC9-223	ENST00000476135	LINC00587	B1AMM8	73 aa		4.04	□□□□□ -1.76
HDAC9-223	ENST00000476135		M0R2T5	61 aa		4.04	□□□□□ -1.76
HDAC9-223	ENST00000476135	LEPROT	O15243	131 aa		4.04	□□□□□ -1.76
HDAC9-223	ENST00000476135	LGALS3	P17931	250 aa	Known RBP	4.04	□□□□□ -1.76
HDAC9-223	ENST00000476135	NMU	P48645	174 aa		4.04	□□□□□ -1.76
HDAC9-223	ENST00000476135	COX17	Q14061	63 aa		4.04	□□□□□ -1.76
HDAC9-223	ENST00000476135	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	4.04	□□□□□ -1.76
HDAC9-223	ENST00000476135	ZNF625	Q96I27	306 aa	Predicted RBP	4.04	□□□□□ -1.76
HDAC9-223	ENST00000476135	NDUFA12	Q9UI09	145 aa		4.04	□□□□□ -1.76
HDAC9-223	ENST00000476135	ERG28	Q9UKR5	140 aa		4.04	□□□□□ -1.76
HDAC9-223	ENST00000476135	IGKV2D-30	A0A075B6S6	120 aa		4.03	□□□□□ -1.76
HDAC9-223	ENST00000476135		E9PLD3	99 aa		4.03	□□□□□ -1.76
HDAC9-223	ENST00000476135		J3QQQ9	107 aa		4.03	□□□□□ -1.76
HDAC9-223	ENST00000476135		M0QXV9	152 aa		4.03	□□□□□ -1.76
HDAC9-223	ENST00000476135	PFN2	P35080	140 aa		4.03	□□□□□ -1.76
HDAC9-223	ENST00000476135	MEIG1	Q5JSS6	88 aa		4.03	□□□□□ -1.76
HDAC9-223	ENST00000476135	KRTAP7-1	Q8IUC3	87 aa		4.03	□□□□□ -1.76
HDAC9-223	ENST00000476135	HIST1H2BL	Q99880	126 aa		4.03	□□□□□ -1.76
HDAC9-223	ENST00000476135	MACF1	Q9UPN3	7388 aa	Known RBP	4.03	□□□□□ -1.76
HDAC9-223	ENST00000476135	FAM229B	Q4G0N7	80 aa		4.02	□□□□□ -1.77
HDAC9-223	ENST00000476135	XAGE1A	Q9HD64	81 aa		4.02	□□□□□ -1.77
HDAC9-223	ENST00000476135	RPL28	P46779	137 aa	Known RBP	4.01	□□□□□ -1.77
HDAC9-223	ENST00000476135	LINC00158	P58513	81 aa		4.01	□□□□□ -1.77
HDAC9-223	ENST00000476135	TSPEAR-AS2	P59090	65 aa		4.01	□□□□□ -1.77
HDAC9-223	ENST00000476135	C9orf129	Q5T035	196 aa	Known RBP	4.01	□□□□□ -1.77
HDAC9-223	ENST00000476135	NKAPP1	Q8N9T2	125 aa		4.01	□□□□□ -1.77
HDAC9-223	ENST00000476135	FAM218A	Q96MZ4	157 aa		4.01	□□□□□ -1.77
HDAC9-223	ENST00000476135	ANAPC11	Q9NYG5	84 aa		4.01	□□□□□ -1.77
HDAC9-223	ENST00000476135	SYNE2	Q8WXH0	6885 aa	Known RBP	4.01	□□□□□ -1.77
HDAC9-223	ENST00000476135	SND1-IT1	Q9HBX3	110 aa		4	□□□□□ -1.77
HDAC9-223	ENST00000476135	TP73-AS1	Q9UF72	201 aa		4	□□□□□ -1.77
HDAC9-223	ENST00000476135	USH2A	O75445	5202 aa		3.99	□□□□□ -1.77
HDAC9-223	ENST00000476135	IGKV2D-26	A0A0A0MRZ7	120 aa		3.99	□□□□□ -1.77
HDAC9-223	ENST00000476135	ZNF815P	A8K554	130 aa		3.99	□□□□□ -1.77
HDAC9-223	ENST00000476135	SMIM13	P0DJ93	91 aa		3.99	□□□□□ -1.77
HDAC9-223	ENST00000476135	ATOH7	Q8N100	152 aa		3.99	□□□□□ -1.77
HDAC9-223	ENST00000476135	MIEN1	Q9BRT3	115 aa		3.99	□□□□□ -1.77
HDAC9-223	ENST00000476135	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	3.98	□□□□□ -1.77
HDAC9-223	ENST00000476135	SPAG11A	Q6PDA7	123 aa		3.98	□□□□□ -1.77
HDAC9-223	ENST00000476135	MRPL55	Q7Z7F7	128 aa	Known RBP	3.98	□□□□□ -1.77
HDAC9-223	ENST00000476135	MIR7-3HG	Q8N6C7	128 aa		3.98	□□□□□ -1.77
HDAC9-223	ENST00000476135	C22orf24	Q9Y442	160 aa		3.98	□□□□□ -1.77
HDAC9-223	ENST00000476135	FLG	P20930	4061 aa	Predicted RBP	3.98	□□□□□ -1.77
HDAC9-223	ENST00000476135		A0A0J9YXY3	114 aa		3.97	□□□□□ -1.77
HDAC9-223	ENST00000476135	TMEM238	C9JI98	176 aa		3.97	□□□□□ -1.77
HDAC9-223	ENST00000476135	BCE1	O60756	84 aa		3.97	□□□□□ -1.77
HDAC9-223	ENST00000476135	TIMM17B	O60830	172 aa		3.97	□□□□□ -1.77
HDAC9-223	ENST00000476135	C5orf47	Q569G3	176 aa		3.97	□□□□□ -1.77
HDAC9-223	ENST00000476135	SCGB1D4	Q6XE38	83 aa		3.97	□□□□□ -1.77
HDAC9-223	ENST00000476135	MTURN	Q8N3F0	131 aa		3.97	□□□□□ -1.77
HDAC9-223	ENST00000476135	CFC1	P0CG37	223 aa		3.96	□□□□□ -1.78
HDAC9-223	ENST00000476135	S100A12	P80511	92 aa		3.96	□□□□□ -1.78
HDAC9-223	ENST00000476135	BOD1L2	Q8IYS8	172 aa		3.96	□□□□□ -1.78
HDAC9-223	ENST00000476135	COPS9	Q8WXC6	57 aa		3.96	□□□□□ -1.78
HDAC9-223	ENST00000476135		M0R378	163 aa		3.95	□□□□□ -1.78
HDAC9-223	ENST00000476135	KRTAP6-3	Q3LI67	103 aa		3.95	□□□□□ -1.78
HDAC9-223	ENST00000476135	DAND5	Q8N907	189 aa		3.95	□□□□□ -1.78
HDAC9-223	ENST00000476135	LINC00167	Q96N53	147 aa		3.95	□□□□□ -1.78
HDAC9-223	ENST00000476135	SPANXB1	Q9NS25	103 aa	Predicted RBP	3.95	□□□□□ -1.78
HDAC9-223	ENST00000476135	IGKV2-28	A0A075B6P5	120 aa		3.94	□□□□□ -1.78
HDAC9-223	ENST00000476135	LOC107984156	A0A0G2JMH3	177 aa		3.94	□□□□□ -1.78
HDAC9-223	ENST00000476135	NCR3	O14931	201 aa		3.94	□□□□□ -1.78
HDAC9-223	ENST00000476135	NDUFC2	O95298	119 aa		3.94	□□□□□ -1.78
HDAC9-223	ENST00000476135	IGKV2D-28	P01615	120 aa		3.94	□□□□□ -1.78
HDAC9-223	ENST00000476135		Q6ZVH6	145 aa		3.94	□□□□□ -1.78
HDAC9-223	ENST00000476135	ARL17A	Q8IVW1	177 aa		3.94	□□□□□ -1.78
HDAC9-223	ENST00000476135	VAMP8	Q9BV40	100 aa		3.94	□□□□□ -1.78
HDAC9-223	ENST00000476135	TTTY13	Q9BZ97	58 aa		3.94	□□□□□ -1.78
HDAC9-223	ENST00000476135		V9GYY9	64 aa		3.94	□□□□□ -1.78
HDAC9-223	ENST00000476135	IGLV8-61	A0A075B6I0	122 aa		3.93	□□□□□ -1.78
HDAC9-223	ENST00000476135	TRBV10-2	A0A0K0K1G8	114 aa		3.93	□□□□□ -1.78
HDAC9-223	ENST00000476135	RPL37AP8	A6NKH3	93 aa		3.93	□□□□□ -1.78
HDAC9-223	ENST00000476135	NPC2	P61916	151 aa		3.93	□□□□□ -1.78
HDAC9-223	ENST00000476135	JOSD1	Q15040	202 aa	Predicted RBP	3.93	□□□□□ -1.78

Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms