RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 CD164Q04900 197 aa9.56□□□□□ -0.88
SHH-205ENST00000472308 Q6Q795 121 aa9.56□□□□□ -0.88
SHH-205ENST00000472308 MYMXA0A1B0GTQ4 84 aa9.55□□□□□ -0.88
SHH-205ENST00000472308 Q5XG85 94 aa9.55□□□□□ -0.88
SHH-205ENST00000472308 TRAV12-1A0A0B4J245 112 aa9.54□□□□□ -0.88
SHH-205ENST00000472308 COX19Q49B96 90 aa9.54□□□□□ -0.88
SHH-205ENST00000472308 SLC25A34Q6PIV7 304 aa9.54□□□□□ -0.88
SHH-205ENST00000472308 SEC11CQ9BY50 192 aa9.54□□□□□ -0.88
SHH-205ENST00000472308 RPS10P5Q9NQ39 176 aa9.54□□□□□ -0.88
SHH-205ENST00000472308 NDUFC2O95298 119 aa9.53□□□□□ -0.88
SHH-205ENST00000472308 S100PP25815 95 aa9.53□□□□□ -0.88
SHH-205ENST00000472308 LAMTOR3Q9UHA4 124 aa9.52□□□□□ -0.89
SHH-205ENST00000472308 EIF4EBP3O60516 100 aaPredicted RBP9.51□□□□□ -0.89
SHH-205ENST00000472308 LCE2BO14633 110 aa9.5□□□□□ -0.89
SHH-205ENST00000472308 SOSTDC1Q6X4U4 206 aa9.49□□□□□ -0.89
SHH-205ENST00000472308 SMIM29Q86T20 159 aa9.49□□□□□ -0.89
SHH-205ENST00000472308 MIEN1Q9BRT3 115 aa9.49□□□□□ -0.89
SHH-205ENST00000472308 Q1RN00 199 aa9.48□□□□□ -0.89
SHH-205ENST00000472308 IFI27L1Q96BM0 104 aa9.48□□□□□ -0.89
SHH-205ENST00000472308 PRO1933Q9H354 126 aa9.48□□□□□ -0.89
SHH-205ENST00000472308 MT2AP02795 61 aa9.46□□□□□ -0.9
SHH-205ENST00000472308 A0A0G2JQZ4 141 aa9.45□□□□□ -0.9
SHH-205ENST00000472308 DHRS4-AS1Q9P1J3 65 aa9.45□□□□□ -0.9
SHH-205ENST00000472308 HINT1P49773 126 aaPredicted RBP9.44□□□□□ -0.9
SHH-205ENST00000472308 COMMD7Q86VX2 200 aa9.44□□□□□ -0.9
SHH-205ENST00000472308 TMEM218A2RU14 115 aa9.43□□□□□ -0.9
SHH-205ENST00000472308 LEPROTO15243 131 aa9.43□□□□□ -0.9
SHH-205ENST00000472308 NPC2P61916 151 aa9.43□□□□□ -0.9
SHH-205ENST00000472308 TRAPPC1Q9Y5R8 145 aa9.43□□□□□ -0.9
SHH-205ENST00000472308 IFITM2Q01629 132 aa9.41□□□□□ -0.9
SHH-205ENST00000472308 J3QQQ9 107 aa9.4□□□□□ -0.9
SHH-205ENST00000472308 AKR1D1P51857 326 aa9.4□□□□□ -0.9
SHH-205ENST00000472308 ADAMTSL4-AS1Q5T5F5 129 aa9.4□□□□□ -0.9
SHH-205ENST00000472308 DEFB105AQ8NG35 78 aa9.4□□□□□ -0.9
SHH-205ENST00000472308 MT1FP04733 61 aa9.39□□□□□ -0.91
SHH-205ENST00000472308 TAL2Q16559 108 aa9.38□□□□□ -0.91
SHH-205ENST00000472308 KRTAP9-3Q9BYQ3 159 aa9.38□□□□□ -0.91
SHH-205ENST00000472308 CBY1Q9Y3M2 126 aa9.38□□□□□ -0.91
SHH-205ENST00000472308 TEX49A0A1B0GTD5 131 aa9.37□□□□□ -0.91
SHH-205ENST00000472308 ELOF1P60002 83 aaKnown RBP9.37□□□□□ -0.91
SHH-205ENST00000472308 NMUP48645 174 aa9.36□□□□□ -0.91
SHH-205ENST00000472308 UQCC3Q6UW78 93 aa9.36□□□□□ -0.91
SHH-205ENST00000472308 ATP11AUNQ6ZP68 121 aa9.36□□□□□ -0.91
SHH-205ENST00000472308 Q75L30 129 aa9.36□□□□□ -0.91
SHH-205ENST00000472308 C20orf202A1L168 122 aa9.35□□□□□ -0.91
SHH-205ENST00000472308 H0Y8G0 127 aa9.35□□□□□ -0.91
SHH-205ENST00000472308 RHEBQ15382 184 aa9.35□□□□□ -0.91
SHH-205ENST00000472308 CHCHD1Q96BP2 118 aaKnown RBP9.35□□□□□ -0.91
SHH-205ENST00000472308 COX7BP24311 80 aa9.34□□□□□ -0.91
SHH-205ENST00000472308 CLLU1Q5K131 121 aa9.34□□□□□ -0.91
SHH-205ENST00000472308 OR13C6PQ8NH95 151 aa9.33□□□□□ -0.92
SHH-205ENST00000472308 A0A0J9YXY3 114 aa9.32□□□□□ -0.92
SHH-205ENST00000472308 LGALS3P17931 250 aaKnown RBP9.32□□□□□ -0.92
SHH-205ENST00000472308 OBSCN-AS1Q96MR7 158 aa9.32□□□□□ -0.92
SHH-205ENST00000472308 TCL1BO95988 128 aa9.31□□□□□ -0.92
SHH-205ENST00000472308 C6orf99Q4VX62 202 aa9.31□□□□□ -0.92
SHH-205ENST00000472308 SPANXCQ9NY87 97 aa9.31□□□□□ -0.92
SHH-205ENST00000472308 IGLV5-48A0A075B6I7 105 aa9.3□□□□□ -0.92
SHH-205ENST00000472308 PLNP26678 52 aa9.29□□□□□ -0.92
SHH-205ENST00000472308 PCP2Q8IVA1 136 aa9.28□□□□□ -0.92
SHH-205ENST00000472308 LINC00308Q8TCZ7 52 aa9.28□□□□□ -0.92
SHH-205ENST00000472308 LITAFQ99732 161 aa9.28□□□□□ -0.92
SHH-205ENST00000472308 SPANXDQ9BXN6 97 aa9.28□□□□□ -0.92
SHH-205ENST00000472308 HERVK_113P61574 105 aa9.27□□□□□ -0.93
SHH-205ENST00000472308 C10orf91Q5T1B1 145 aa9.27□□□□□ -0.93
SHH-205ENST00000472308 PMCHL2Q9BQD1 86 aa9.26□□□□□ -0.93
SHH-205ENST00000472308 KRTAP10-10P60014 251 aa9.25□□□□□ -0.93
SHH-205ENST00000472308 KRTAP19-6Q3LI70 58 aa9.25□□□□□ -0.93
SHH-205ENST00000472308 HSBP1O75506 76 aa9.24□□□□□ -0.93
SHH-205ENST00000472308 DPM2O94777 84 aa9.24□□□□□ -0.93
SHH-205ENST00000472308 TRBV7-6A0A0J9YX20 115 aa9.21□□□□□ -0.94
SHH-205ENST00000472308 KRTAP6-3Q3LI67 103 aa9.21□□□□□ -0.94
SHH-205ENST00000472308 IGKCP01834 107 aa9.2□□□□□ -0.94
SHH-205ENST00000472308 TRBV20-1A0A075B6N2 111 aa9.19□□□□□ -0.94
SHH-205ENST00000472308 LEPROTL1O95214 131 aa9.19□□□□□ -0.94
SHH-205ENST00000472308 E9PLD3 99 aa9.18□□□□□ -0.94
SHH-205ENST00000472308 LINC00310P59036 64 aa9.18□□□□□ -0.94
SHH-205ENST00000472308 A0A1B0GWB2 263 aa9.17□□□□□ -0.94
SHH-205ENST00000472308 LINC00846Q9NV44 126 aa9.17□□□□□ -0.94
SHH-205ENST00000472308 NEBP20929 6669 aa9.16□□□□□ -0.94
SHH-205ENST00000472308 Q96NJ1 140 aa9.16□□□□□ -0.94
SHH-205ENST00000472308 C20orf166-AS1Q96NR2 134 aa9.16□□□□□ -0.94
SHH-205ENST00000472308 TRBV7-7A0A0K0K1E9 115 aa9.15□□□□□ -0.94
SHH-205ENST00000472308 TIMM17BO60830 172 aa9.15□□□□□ -0.94
SHH-205ENST00000472308 LINC00518Q8N0U6 118 aa9.15□□□□□ -0.94
SHH-205ENST00000472308 YPEL4Q96NS1 127 aa9.14□□□□□ -0.95
SHH-205ENST00000472308 A8MUU9 505 aa9.13□□□□□ -0.95
SHH-205ENST00000472308 IGFL1Q6UW32 110 aa9.12□□□□□ -0.95
SHH-205ENST00000472308 SERF1AO75920 110 aa9.11□□□□□ -0.95
SHH-205ENST00000472308 FABP4P15090 132 aa9.1□□□□□ -0.95
SHH-205ENST00000472308 HSPB8Q9UJY1 196 aa9.1□□□□□ -0.95
SHH-205ENST00000472308 CLEC2BQ92478 149 aa9.09□□□□□ -0.95
SHH-205ENST00000472308 FAM236DA0A1B0GTK5 79 aa9.08□□□□□ -0.96
SHH-205ENST00000472308 F8WEM9 126 aa9.08□□□□□ -0.96
SHH-205ENST00000472308 FAM236CP0DP71 79 aa9.08□□□□□ -0.96
SHH-205ENST00000472308 MPLKIPQ8TAP9 179 aa9.07□□□□□ -0.96
SHH-205ENST00000472308 KRTAP16-1A8MUX0 517 aa9.06□□□□□ -0.96
SHH-205ENST00000472308 TTTY13Q9BZ97 58 aa9.06□□□□□ -0.96
SHH-205ENST00000472308 A4D1N5 150 aa9.05□□□□□ -0.96
SHH-205ENST00000472308 Q6JHZ5 121 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms