RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 APLNQ9ULZ1 77 aa9.05□□□□□ -0.96
COL6A3-209ENST00000472056 AVPP01185 164 aa9.04□□□□□ -0.96
COL6A3-209ENST00000472056 DNAH10OSP0CZ25 163 aa9.04□□□□□ -0.96
COL6A3-209ENST00000472056 K7EQZ3 153 aa9.04□□□□□ -0.96
COL6A3-209ENST00000472056 PLA2G2DQ9UNK4 145 aa9.02□□□□□ -0.97
COL6A3-209ENST00000472056 LINC00528Q8N1L1 170 aa9.01□□□□□ -0.97
COL6A3-209ENST00000472056 TYMSOSQ8TAI1 123 aa9□□□□□ -0.97
COL6A3-209ENST00000472056 C9orf129Q5T035 196 aaKnown RBP8.99□□□□□ -0.97
COL6A3-209ENST00000472056 ST20-AS1Q8NBB2 130 aa8.99□□□□□ -0.97
COL6A3-209ENST00000472056 PRO3102Q9H379 93 aa8.98□□□□□ -0.97
COL6A3-209ENST00000472056 Q96NJ1 140 aa8.98□□□□□ -0.97
COL6A3-209ENST00000472056 A0A1B0GVX0 72 aa8.98□□□□□ -0.97
COL6A3-209ENST00000472056 STAB1Q9NY15 2570 aa8.97□□□□□ -0.97
COL6A3-209ENST00000472056 ITPR3Q14573 2671 aa8.97□□□□□ -0.97
COL6A3-209ENST00000472056 CHD6Q8TD26 2715 aa8.96□□□□□ -0.98
COL6A3-209ENST00000472056 NOTCH1P46531 2555 aa8.94□□□□□ -0.98
COL6A3-209ENST00000472056 TLX1NBP0CAT3 122 aa8.94□□□□□ -0.98
COL6A3-209ENST00000472056 CSNK1G2-AS1Q8NCQ2 148 aa8.93□□□□□ -0.98
COL6A3-209ENST00000472056 LINC00483Q53H64 154 aa8.93□□□□□ -0.98
COL6A3-209ENST00000472056 EP400Q96L91 3159 aa8.93□□□□□ -0.98
COL6A3-209ENST00000472056 OBSCN-AS1Q96MR7 158 aa8.92□□□□□ -0.98
COL6A3-209ENST00000472056 C8orf17Q9NRJ1 99 aa8.92□□□□□ -0.98
COL6A3-209ENST00000472056 A0A0A0MQY5 61 aa8.92□□□□□ -0.98
COL6A3-209ENST00000472056 IGLV1-50A0A075B6I6 118 aa8.91□□□□□ -0.98
COL6A3-209ENST00000472056 PRR34Q9NV39 138 aa8.9□□□□□ -0.99
COL6A3-209ENST00000472056 Q75L30 129 aa8.89□□□□□ -0.99
COL6A3-209ENST00000472056 Q8NAQ8 132 aa8.89□□□□□ -0.99
COL6A3-209ENST00000472056 FLNBO75369 2602 aaKnown RBP8.89□□□□□ -0.99
COL6A3-209ENST00000472056 IGFL1Q6UW32 110 aa8.89□□□□□ -0.99
COL6A3-209ENST00000472056 DMBT1Q9UGM3 2413 aaPredicted RBP8.88□□□□□ -0.99
COL6A3-209ENST00000472056 GCN1Q92616 2671 aaKnown RBP8.88□□□□□ -0.99
COL6A3-209ENST00000472056 C15orf56Q8N910 161 aa8.87□□□□□ -0.99
COL6A3-209ENST00000472056 NBDYA0A0U1RRE5 68 aa8.86□□□□□ -0.99
COL6A3-209ENST00000472056 CDSNQ15517 529 aa8.85□□□□□ -0.99
COL6A3-209ENST00000472056 RTL8CO15255 209 aa8.85□□□□□ -0.99
COL6A3-209ENST00000472056 PHF5AQ7RTV0 110 aaKnown RBP8.84□□□□□ -0.99
COL6A3-209ENST00000472056 FAM104AQ969W3 186 aa8.84□□□□□ -0.99
COL6A3-209ENST00000472056 UNC79Q9P2D8 2635 aa8.84□□□□□ -0.99
COL6A3-209ENST00000472056 Q8N377 158 aa8.84□□□□□ -0.99
COL6A3-209ENST00000472056 HELZ2Q9BYK8 2649 aaKnown RBP8.84□□□□□ -0.99
COL6A3-209ENST00000472056 OCR1Q9BZK8 76 aa8.83□□□□□ -1
COL6A3-209ENST00000472056 IGLV5-48A0A075B6I7 105 aa8.82□□□□□ -1
COL6A3-209ENST00000472056 ZNF861PO60384 105 aa8.82□□□□□ -1
COL6A3-209ENST00000472056 RBM12B-AS1Q9P1G2 102 aa8.81□□□□□ -1
COL6A3-209ENST00000472056 H3BS24 57 aa8.8□□□□□ -1
COL6A3-209ENST00000472056 LINC00588Q9Y4M8 146 aa8.79□□□□□ -1
COL6A3-209ENST00000472056 CHTF8P0CG12 524 aa8.79□□□□□ -1
COL6A3-209ENST00000472056 COX6B2Q6YFQ2 88 aa8.79□□□□□ -1
COL6A3-209ENST00000472056 A0A1W2PPR1 153 aa8.78□□□□□ -1
COL6A3-209ENST00000472056 DMAC1Q96GE9 116 aa8.78□□□□□ -1
COL6A3-209ENST00000472056 ASB16-AS1Q495Z4 193 aa8.78□□□□□ -1
COL6A3-209ENST00000472056 IGLV7-46A0A075B6I9 117 aa8.77□□□□□ -1.01
COL6A3-209ENST00000472056 SPRR4Q96PI1 79 aa8.77□□□□□ -1.01
COL6A3-209ENST00000472056 TEX15Q9BXT5 2789 aa8.77□□□□□ -1.01
COL6A3-209ENST00000472056 COL6A5A8TX70 2615 aa8.76□□□□□ -1.01
COL6A3-209ENST00000472056 IGLV5-37A0A075B6J1 123 aa8.75□□□□□ -1.01
COL6A3-209ENST00000472056 LINC00304Q8N9R0 145 aa8.75□□□□□ -1.01
COL6A3-209ENST00000472056 STAB2Q8WWQ8 2551 aa8.74□□□□□ -1.01
COL6A3-209ENST00000472056 LINC00612Q8N6U2 182 aa8.72□□□□□ -1.01
COL6A3-209ENST00000472056 GOLGB1Q14789 3259 aaKnown RBP8.72□□□□□ -1.01
COL6A3-209ENST00000472056 CNBPP62633 177 aaKnown RBP8.71□□□□□ -1.01
COL6A3-209ENST00000472056 FAM168BA1KXE4 195 aa8.7□□□□□ -1.02
COL6A3-209ENST00000472056 A0A0D9SG42 100 aa8.7□□□□□ -1.02
COL6A3-209ENST00000472056 CEP350Q5VT06 3117 aa8.67□□□□□ -1.02
COL6A3-209ENST00000472056 DNAH12Q6ZR08 3092 aa8.66□□□□□ -1.02
COL6A3-209ENST00000472056 DSCR10P59022 87 aa8.66□□□□□ -1.02
COL6A3-209ENST00000472056 SMR3AQ99954 134 aa8.66□□□□□ -1.02
COL6A3-209ENST00000472056 CAMK2N1Q7Z7J9 78 aa8.66□□□□□ -1.02
COL6A3-209ENST00000472056 KRTAP10-9P60411 292 aa8.65□□□□□ -1.03
COL6A3-209ENST00000472056 C9orf163Q8N9P6 203 aa8.64□□□□□ -1.03
COL6A3-209ENST00000472056 TNP2Q05952 138 aa8.64□□□□□ -1.03
COL6A3-209ENST00000472056 LINC01558Q9Y6Z2 57 aa8.63□□□□□ -1.03
COL6A3-209ENST00000472056 A0A1B0GU33 70 aa8.62□□□□□ -1.03
COL6A3-209ENST00000472056 EIF4EBP3O60516 100 aaPredicted RBP8.61□□□□□ -1.03
COL6A3-209ENST00000472056 A0A1W2PNM2 257 aa8.6□□□□□ -1.03
COL6A3-209ENST00000472056 BAHCC1Q9P281 2608 aa8.59□□□□□ -1.03
COL6A3-209ENST00000472056 J3QL48 77 aa8.59□□□□□ -1.03
COL6A3-209ENST00000472056 Q8N9P0 234 aaPredicted RBP8.59□□□□□ -1.04
COL6A3-209ENST00000472056 Q5XG85 94 aa8.58□□□□□ -1.04
COL6A3-209ENST00000472056 ITPR2Q14571 2701 aa8.57□□□□□ -1.04
COL6A3-209ENST00000472056 IGLV7-43P04211 117 aa8.57□□□□□ -1.04
COL6A3-209ENST00000472056 MAP1AP78559 2803 aaPredicted RBP8.57□□□□□ -1.04
COL6A3-209ENST00000472056 APCP25054 2843 aa8.55□□□□□ -1.04
COL6A3-209ENST00000472056 TEP1Q99973 2627 aaKnown RBP8.55□□□□□ -1.04
COL6A3-209ENST00000472056 HRES1P13985 223 aa8.54□□□□□ -1.04
COL6A3-209ENST00000472056 ZNF292O60281 2723 aa8.54□□□□□ -1.04
COL6A3-209ENST00000472056 FAM229BQ4G0N7 80 aa8.54□□□□□ -1.04
COL6A3-209ENST00000472056 WWC2-AS2Q96NR7 200 aa8.53□□□□□ -1.04
COL6A3-209ENST00000472056 C9orf92A6NGG3 77 aa8.52□□□□□ -1.05
COL6A3-209ENST00000472056 C19orf73Q9NVV2 129 aa8.51□□□□□ -1.05
COL6A3-209ENST00000472056 ZNF575Q86XF7 245 aa8.5□□□□□ -1.05
COL6A3-209ENST00000472056 Q8N1X5 172 aa8.49□□□□□ -1.05
COL6A3-209ENST00000472056 A0A087WTM6 91 aa8.49□□□□□ -1.05
COL6A3-209ENST00000472056 FP248Q71RG6 208 aaPredicted RBP8.49□□□□□ -1.05
COL6A3-209ENST00000472056 GIG44P09565 113 aaPredicted RBP8.48□□□□□ -1.05
COL6A3-209ENST00000472056 PSORS1C2Q9UIG4 136 aa8.48□□□□□ -1.05
COL6A3-209ENST00000472056 Q5VV11 94 aa8.48□□□□□ -1.05
COL6A3-209ENST00000472056 CSAG1Q6PB30 78 aa8.46□□□□□ -1.06
COL6A3-209ENST00000472056 SPINK7P58062 85 aa8.44□□□□□ -1.06
COL6A3-209ENST00000472056 PRR26Q8N8Z3 221 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms